جستجوی استاد راهنمای دانشگاهی

Yann Ponty is a tenured CNRS Researcher at the Computer Science Department (LIX) of École Polytechnique (Institut Polytechnique de Paris, France). He leads the AMIBio team and serves as Deputy Director of LIX. His work focuses on developing bioinformatics methods at the intersection of computer science, mathematics, and molecular biology, particularly for RNA structure prediction, design, and evolution. He holds leadership roles in the ISCB Board of Directors (2025-2027) and the HDR referent for the IDIA department (CS&Interactions) at IP Paris. Research Interests: RNA folding/design/evolution, RNA-RNA/RNA-protein interactions, random generation, enumerative combinatorics, discrete algorithms, parameterized complexity, RNA visualization Key Contributions: Developed algorithms for RNA inverse folding, pseudoknot modeling, and dynamic programming optimization Collaborations: Partnerships with institutions like Simon Fraser University, Boston College, and Université Paris-Saclay His recent publications (15 most recent) span RNA structure prediction, pseudoknot partition functions, linear-time inverse folding algorithms, and parameterized sampling techniques. The work emphasizes dynamic programming, combinatorial approaches, and integration of experimental data for improving RNA modeling. Scientific awards include election to the ISCB Board of Directors (2025-2027) and leadership roles in academic networks like GdR BIM. He actively contributes to software development (VARNA, RNANR, SPARCS, IncaRNAtion, RNARedPrint) and serves as Associate Editor for Bioinformatics (OUP). Teaching engagements include graduate-level courses in combinatorial optimization, RNA bioinformatics, and algorithms at Université Paris-Saclay and École Polytechnique.

• RNA Folding
• RNA Design
• RNA Evolution
• +۹ مورد دیگر

Maria Angeles Ayllón is an Associate Professor at the Technical University of Madrid (UPM) and leads the Virus-Fungus-Plant Interaction research group at the Center for Plant Biotechnology and Genomics (CBGP-UPM/INIA/CSIC) . Her research focuses on understanding the molecular mechanisms of mycovirus interactions with plant pathogenic fungi, particularly Botrytis cinerea , to develop sustainable biocontrol strategies for plant diseases. Research Focus: Mycovirus diversity and evolution in fungal pathogens Molecular mechanisms of fungal responses to viral infections Development of mycovirus-based biocontrol agents RNA silencing in fungi as antiviral defense Synthetic mycovirus construction for functional studies Her group has made significant contributions to mycovirus discovery, including novel Botrytis cinerea viruses, and has developed infectious clones for reverse genetics studies. The research has direct applications in sustainable agriculture, particularly in reducing chemical fungicide use as mandated by the EU Green Deal. Current Research Projects: PID2020-120106RB-I00 (2021-2024): "Molecular mechanism involved in the interaction of Botrytis cinerea-host plant mediated by a mycoviral infection" - Co-PI with Julio L. Rodríguez-Romero VIROPLANT H2020-SFS-17 (2018-2021): "Virome NGS analysis of pests and pathogens for plant protection" - PI Research Team: The group currently includes 3 PhD students (Cecilia Martín Parera, Julian Méndez Garcia), 1 postdoc (Javier Pardo Medina), and collaborates with Assistant Professor Julio Luis Rodriguez Romero. Laboratory Facilities: The group operates from offices (Room 223) and laboratories (Room 229) at the CBGP facilities in Montegancedo Campus, Madrid, with full molecular biology, genomics, and plant pathology capabilities.

• Mycovirology
• Plant Pathology
• Fungal Virology
• +۴ مورد دیگر

María Ángeles Ayllón is an Associate Professor at the Polytechnic University of Madrid (UPM), leading the Virus-Fungus-Plant Interaction group. Her research focuses on understanding mycovirus-fungal host interactions and their application in biocontrol. She collaborates with the International Committee on Taxonomy of Viruses (ICTV) on viral family classifications, such as Botourmiaviridae and Hypoviridae . Her work addresses fungal pathogen control via viral agents to reduce pesticide use, aligning with EU’s Green Deal goals. Ayllón oversees a multidisciplinary team including PhD students and postdocs, such as Javier Pardo Medina and Julio L. Rodríguez-Romero. Her research spans three main areas: mycovirus diversity and evolution, molecular mechanisms of viral-fungal interactions, and development of synthetic mycoviruses as biocontrol tools. Key projects include analyzing the mycovirome of Botrytis cinerea isolates and constructing infectious viral clones for reverse genetics. She has secured grants like Molecular Mechanisms in Botrytis-Plant Interaction (PID2020-120106RB-I00) and the H2020-funded ViroPlant initiative, fostering international collaboration. Ayllón’s team explores novel mycoviruses and their impact on fungal virulence, aiming to develop eco-friendly alternatives to chemical fungicides. Her contributions include discovering new viral families and elucidating RNA silencing pathways in fungi. Ongoing efforts focus on synthetic biology approaches to enhance mycovirus efficacy in agricultural settings.

• Mycovirology
• Fungal Pathogen Biology
• Biocontrol Strategies
• +۳ مورد دیگر

Dr. Amparo Monfort is a researcher at the Institut de Recerca i Tecnologia Agroalimentàries (IRTA) and affiliated with the Centre de Recerca en Agrigenòmica (CRAG) . She specializes in Rosaceae genomics with a focus on strawberry and melon species. Genomics and Biotechnology Program member Expert in resistance gene mapping and functional genomics Research Interests : Genetic analysis of disease resistance (powdery mildew, anthracnose) Development of genomic tools for polyploid crops Functional characterization of fruit quality traits Comparative genomics across Rosaceae species Transposable element analysis in plant genomes Key Publications Trends : Focus on GWAS for strawberry resistance, SSR marker development, resistance gene homologs in melon, and polyploid genomic resources. Works bridge Arabidopsis model systems with applied crop improvement. Scientific Contributions : Development of NIL collections for trait analysis Creation of high-density SNP arrays for strawberry Elucidation of melon resistance gene clusters Advancing polyploid genomic prediction models Collaborative Networks : Works with international teams across Spain, Italy, USA, and Sweden. Collaborates on projects involving strawberry, melon, peach, and Rubus species.

• Rosaceae Genomics
• Plant Genetics
• Fruit Crop Improvement
• +۳ مورد دیگر

Antonio Aguilera Guirao is an Associate Professor at the Department of Microbiology and Parasitology, Faculty of Medicine and Dentistry, University of Santiago de Compostela. He is affiliated with the Instituto de Investigación del Medio Acuático para una Salud Global (iARCUS) and the Agrupación Estratégica BioReDes . His research focuses on viral diagnostics, hepatitis viruses (HBV, HCV, HDV), HIV/AIDS, and HTLV-1. He earned his PhD in 1990 with a thesis on HIV-1 prognosis markers. His work emphasizes molecular epidemiology, public health interventions, and optimizing diagnostic strategies for viral infections. Key projects include SARS-CoV-2 wastewater surveillance, hepatitis delta detection, and expanding HTLV screening in Europe. Education: PhD in Microbiology (1990, USC) with a thesis on HIV-1 immunoblot assays. Extensive postdoctoral expertise in virology and clinical microbiology. Research interests span viral hepatitis management, antiretroviral resistance, and molecular diagnostics. His recent studies address hepatitis C one-step diagnosis, SARS-CoV-2 variant tracking, and optimizing HTLV-1 screening in high-risk populations. He collaborates on national and international guidelines for viral hepatitis elimination. Advising: No advisees listed. Grants: Active in hepatitis and HIV research funding initiatives. Labs: iARCUS and BioReDes focus on aquatic health and sustainable bioresource management, respectively.

• Virology
• Infectious Diseases
• Molecular Diagnostics
• +۳ مورد دیگر

Jesús Israel Pagán Muñoz is an Associate Professor at the Universidad Politécnica de Madrid (UPM) , leading the research group 'Determinants of Plant Virus Seed Transmission and Speciation' at the Centro de Biotecnología y Genómica de Plantas (UPM-INIA/CSIC) . His work focuses on understanding plant virus emergence, speciation, and seed transmission dynamics, with applications in sustainable agriculture and biotechnology. His research addresses ecological and genetic factors influencing virus speciation in Iberian ecosystems, seed transmission mechanisms in Arabidopsis thaliana , and collaborations on animal/human RNA virus evolution. Key projects include studying biodiversity impacts on virus prevalence and biotech strategies to combat seed-transmitted pathogens. Funding includes grants from the Spanish Ministry of Economy and Competitiveness (BIO2016-79165-R) and Marie Curie Actions (PCIG11-GA-2012-322100). Recent articles highlight plant-virus interactions under stress, phage therapy for antibiotic-resistant bacteria, and seed transmission quantification. Advising : Supervising PhD student Lucía García Ordoñez and collaborating with postdocs and technicians. Labs/Teams : CBGP's Plant-Virus Interaction Lab and interdisciplinary groups studying viral evolution and ecology. Future Work : Biotech partnerships to develop seed-transmission-resistant crops and ecological modeling of pathogen emergence.

• Plant Virology
• Epidemiology of Infectious Diseases
• Evolutionary Biology
• +۳ مورد دیگر

Javier Espinosa Manzano is an Associate Professor in the Department of Physiology, Genetics and Microbiology at the University of Alicante, where he has been a faculty member since 2010. He currently serves as Secretary of the Department (since December 2022) and teaches multiple courses across undergraduate and graduate programs in Biology. He earned his BSc in Biology (2002) and PhD in Genetics (2007, with European Mention) from the University of Alicante. His postdoctoral research included a fellowship at the University of Tübingen (Germany) and a short-term stay at UCSD (California) supported by EMBO. His research focuses on understanding how unicellular cyanobacteria sense their environment and respond to changes, with particular emphasis on nitrogen metabolism regulation and signal transduction pathways in Synechococcus elongatus . His work has led to the characterization of the multifunctional protein PipX and genetic dissection of cyanobacterial two-component signaling systems. Recent research has expanded into CRISPR-Cas systems and their interactions with anti-CRISPR mechanisms. His publication record shows consistent productivity with significant contributions in high-impact journals like PNAS and Frontiers in Microbiology, demonstrating expertise in both fundamental cyanobacterial physiology and emerging gene editing technologies. The research spans molecular mechanisms of nitrogen regulation, circadian clock interactions, and more recently, bacterial immunity systems. He has supervised 3 PhD theses (all at University of Alicante) with distinction marks including SUMMA CUM LAUDE, and has guided numerous undergraduate and Master's research projects. His teaching portfolio is extensive, covering Genetics, Molecular Techniques, and Gene Expression Regulation across multiple Biology programs. He has taught courses like Genetics (15 times), Signaling and Gene Expression Regulation (15 times), and Biotechnology Laboratory (15 times), with teaching activities scheduled through 2025. He has participated in 12 research projects as a researcher and led 2 as principal investigator, including projects funded by the Ministry of Economy and Enterprise, Valencian Government, and University of Alicante, focusing on cyanobacterial signaling networks and molecular interactions.

• Cyanobacteria Research
• Nitrogen Metabolism
• Signal Transduction
• +۵ مورد دیگر

Sarah J. Berkemer is an Assistant Professor at École Polytechnique and a researcher in the AMIBio Group at LIX (Laboratoire d'Informatique de l'École Polytechnique). She is also an affiliated scientist at ELSI (Earth-Life Science Institute) in Tokyo, Japan. Her work bridges RNA bioinformatics , computational biology , and urban development through algorithmic and data-driven approaches. Education : PhD in Computer Science from Leipzig University, Germany. Research Interests RNA structure prediction and sequencing analysis Dynamic programming and formal language methods in bioinformatics Phylogenetics and evolution of Archaea/Bacteria Urban data science and OSM (OpenStreetMap) integration Projects & Funding SYNORG (2024–2028): Synthetic organelles via RNA engineering BATO-MOUCHE (2022–2025): Urban development modeling RNA-RAPSODY (2021–2024): Robust parameter space analysis in RNA bioinformatics Scientific Awards Marie-Curie Fellow (2021–2024) Sarah actively supervises internships and thesis projects and has contributed to interdisciplinary research spanning biology and computer science.

• RNA Bioinformatics
• Computational Biology
• Computer Science
• +۵ مورد دیگر

Miguel González Blanco is a Professor at the University of Santiago de Compostela (USC), affiliated with the Faculty of Chemistry and the Department of Biochemistry and Molecular Biology . He is part of the MeMoEn research group ( Molecular mechanisms of disease ) and the Center for Research in Molecular Medicine and Chronic Diseases (CIMUS) . His doctoral thesis, New contributions to the study of the human minisatellite MsH42, phylogeny, digestion and paradoxes (2005), was supervised by Dr. Jaime Gómez Márquez and Dr. Francisco Boan Fernández. His research focuses on DNA repair mechanisms , recombination processes , and molecular pathways underlying diseases such as cancer. Key areas include Holliday junction resolution, structure-selective endonucleases (e.g., Yen1/GEN1, Mus81), SUMOylation regulation, and RNA editing's role in cellular reprogramming. His recent work addresses the interplay between DNA repair enzymes and genomic stability in tumors, particularly pancreatic ductal adenocarcinoma. Publications highlight advancements in understanding DNA repair dynamics, retrotransposon-driven genomic rearrangements in cancer, and the functional roles of enzymes like Pif1 helicase and eIF5A. His research bridges basic molecular mechanisms with translational insights into disease pathogenesis.

• Molecular Biology
• Genetics
• Biochemistry
• +۵ مورد دیگر

Dr. Josep Quer Sivila is a Senior Researcher at Vall d'Hebron Research Institute (affiliated with Universitat Autònoma de Barcelona) since May 2021, specializing in virology and molecular biology. He obtained his PhD in 1994 from UAB, focusing on hepatitis C virus dynamics. Currently accepting PhD students, his research examines viral evolution through high-throughput sequencing techniques. Research Interests: Viral pathogenesis (HCV, SARS-CoV-2, RSV), quasispecies dynamics, genomic evolution of RNA viruses, and development of molecular diagnostics. Core methodologies include next-generation sequencing and bioinformatic analysis of viral populations. Publication Trends: Recent works (2023-2025) focus on SARS-CoV-2 variant evolution, HCV quasispecies pathology, and respiratory virus surveillance, demonstrating consistent emphasis on genomic characterization of viral pathogens and clinical applications. Projects: Principal investigator on hepatitis C research grants including: Molecular characterization of HCV quasispecies in clinical contexts (CICYT, 1992-1994) Development of PCR and hybridization techniques for HCV diagnosis (UAB, 1990-1991)

• Virology
• Molecular Biology
• Infectious Diseases
• +۲ مورد دیگر

Werner Howad is a Researcher in Rosaceae Genomics and Head of the Genetic Analysis Service at CRAG (Centre de Recerca en Agrigenòmica), which operates under the Institut de Recerca i Tecnologia Agroalimentàries (IRTA). His work is conducted within the Genomics and Biotechnology Program, focusing on the genetic analysis of economically important Rosaceae fruit crops including peach, almond, and plum. Howad's research interests center on plant genomics with particular emphasis on Rosaceae species. His work spans molecular marker development, genome mapping, quantitative trait loci analysis, and the application of genomic tools to fruit tree breeding. He has made significant contributions to understanding genetic diversity, population structure, and the genomic basis of important agronomic traits in stone fruits. His research bridges fundamental genomic discoveries with practical applications for crop improvement. Analysis of his publication record reveals a clear trajectory from early work on RNA editing in plant mitochondria to contemporary genomic approaches for fruit tree improvement. His research shows consistent focus on developing molecular tools for marker-assisted selection, trait mapping, and understanding genome evolution in Rosaceae. Recent publications demonstrate increasing sophistication in genomic technologies, including whole genome sequencing, high-density mapping, and the study of transposable elements in genome evolution. Throughout his career, Howad has maintained strong collaborative relationships with international research groups, as evidenced by his extensive co-authorship network across numerous publications. His work has significantly contributed to the development of genomic resources for Rosaceae crops, facilitating more efficient breeding approaches for these long-generation species.

• Rosaceae Genomics
• Plant Genetics
• Molecular Markers
• +۵ مورد دیگر

Inés Corral Pérez is a full professor and leader of the Excited State Reactivity research group at the Autonomous University of Madrid (UAM). Her work focuses on prebiotic chemical evolution and the photophysical mechanisms underlying nucleic acid composition. She holds a PhD in Chemistry from UAM (2005) and completed postdoctoral research at the Free University of Berlin and Friedrich Schiller University of Jena. She has been a Juan de la Cierva and Ramón y Cajal Research Fellow. Education: PhD in Chemistry (UAM, 2005) Her research investigates why DNA/RNA bases persist under UV radiation, studying ancestral molecular precursors through photophysical analysis. Current projects explore chemical evolution pathways in early Earth conditions. Awards include the Madrid Community's top doctoral thesis prize. She leads 3 national and 4 international research projects, supervising 9 doctoral theses. Her group examines light-driven reactions in prebiotic molecules to uncover evolutionary selection mechanisms. Active in interdisciplinary science, her work bridges chemistry and astrobiology, contributing to understanding life's molecular origins.

• Chemical Evolution
• Prebiotic Chemistry
• Photophysical Processes
• +۳ مورد دیگر

Mohammed Moussaoui Keribii is a Researcher in the Department of Biochemistry and Molecular Biology at Universitat Autònoma de Barcelona, specializing in ribonuclease research with a focus on eosinophil-derived proteins and their antimicrobial properties. He is part of the Biomolecular Microbiology Group and has maintained an active research profile since at least 1991, with his PhD awarded in 1998 from the same institution. His educational background includes: PhD in Doctorat from Universitat Autònoma de Barcelona (UAB), awarded January 1, 1998 Moussaoui Keribii's research spans several interconnected domains: Structural and functional characterization of human ribonucleases, particularly RNase2, RNase3 (eosinophil cationic protein), and RNase6 Mechanisms of ribonuclease action against bacterial pathogens and biofilms Evolutionary adaptations within the RNase A superfamily Development of RNase-based therapeutics against antimicrobial resistance Immune modulation by secreted ribonucleases in extracellular spaces His work bridges fundamental biochemistry with translational applications in combating antimicrobial resistance. His publication record shows consistent productivity with 37 research outputs, including high-impact articles such as his 2018 review in Frontiers in Immunology which has received 136 Scopus citations. His research has been supported by multiple competitive grants from organizations including the European Regional Development Fund and Fundació La Marató de TV3. Moussaoui Keribii has been instrumental in several major collaborative projects: HOST EXTRACELLULAR RNASES SHAPING THE REGULATORY RNA NETWORK DURING INFECTION (2023-2026, active) AMRnase: An RNase-based drug to target antimicrobial resistance (2022-2024) NON CODING RNA CLEAVAGE IN HOST DEFENCE AGAINST INFECTION (2020-2023) Pattern recognition of non-coding RNA's to search for novel therapeutic targets (2019-2022) These projects demonstrate his leadership in applying ribonuclease research to address critical challenges in infectious disease and antimicrobial resistance.

• Ribonuclease Research
• Eosinophil Biology
• Antimicrobial Activity
• +۴ مورد دیگر

Oriol Vidal Fàbrega is a Professor in the Department of Biology at the University of Girona, where he is affiliated with the Genetic Ichthyology Laboratory research group. His academic work spans genetics, evolutionary biology, and molecular biology, with a focus on both domestic and wild species. He holds a PhD in Animal Production and has established research lines in goat domestication, invasive species, and cavefish evolution. Research Interests: His primary research areas include Molecular Genetics , Evolutionary Biology , and Conservation Genetics . He investigates the genetic basis of adaptation in extreme environments, particularly in Astyanax mexicanus , a model organism for evolutionary and metabolic studies. His work integrates QTL analysis, population genomics, and transcriptomics to understand phenotypic changes in cave-dwelling fish and invasive freshwater species. He also explores the genetic diversity of domestic goats and meat quality traits in pigs. The recent publications highlight a strong trend in evolutionary genomics, with multiple studies on Astyanax mexicanus focusing on metabolic adaptation, eye degeneration, and gene regulation. Other works address invasive species monitoring and livestock genetics, reflecting a dual focus on basic and applied research. Scientific Recognition: Although no formal awards are listed, his research has been published in high-impact journals such as Proceedings of the National Academy of Sciences (PNAS) , and his work on growth hormone in cavefish was highlighted in Nature , indicating significant scientific influence. Advising and Grants: He has served as Principal Investigator on competitive grants, including an INIA project (RZ2007-00005-C02-02) on goat genetics. He has collaborated with institutions such as the Universitat Autònoma de Barcelona, the Centro Ricerche Studi Agroalimentari in Milan, and the Cave Biology Lab at New York University. These collaborations have led to international publications and postdoctoral exchanges. Laboratories and Teams: He is a key member of the Grup de Recerca Laboratori d'Ictiologia Genètica at the University of Girona. This team focuses on genetic studies of fish, including both native and invasive species, and uses molecular tools to address ecological and evolutionary questions. The lab also participates in national and regional environmental monitoring projects, particularly with the Agència Catalana de l’Aigua.

• Genetics
• Molecular Genetics
• Evolutionary Biology
• +۷ مورد دیگر

Olga Serra is an Associate Professor in the Department of Biology at the University of Girona (UdG) since 2019 and co-leads the Cork Laboratory research group. Her research focuses on plant biology, particularly the molecular mechanisms of suberin and ligno-suberified tissue formation in Arabidopsis and potato, using functional genetics, molecular techniques, and chemical analysis. Doctorate in Biology from University of Girona (2008) Degree in Biology from University of Girona (2005) Her research explores phellem formation in cork oak via massive sequencing, functional genomics of periderm in potato, and chemical/structural analysis of suberin. Collaborations include institutions in Madrid, Bonn, New York, and Lausanne. Recent publications address cork hybrid analysis, suberin chemical profiling, and gene silencing in potato periderm. She employs interdisciplinary methods like transcriptomics, metabolomics, and solid-state NMR to study plant defense tissues.

• Plant Biology
• Suberin Biosynthesis
• Periderm Development
• +۴ مورد دیگر