جست‌وجوی استاد و پژوهشگر

Joanne Morriseyمشاهده پروفایل

پژوهشگر

• Malaria Research
• Parasitology
• Microbiology
• +۳ مورد دیگر

Joanne Morrisey is a Researcher in the Department of Microbiology & Immunology at Drexel University College of Medicine. She has held this position since 1984, following prior roles as a research technician at Rockefeller University and supervisor of clinical rheumatology at Upjohn Corporation. Her research focuses on malaria parasite biology, particularly Plasmodium falciparum , with emphasis on mitochondrial functions, antimalarial drug development, and metabolic pathways. Education: BA in Chemistry from Douglas College and Rutgers University Research Interests: Dr. Morrisey investigates the metabolic and molecular mechanisms underlying Plasmodium falciparum survival and drug resistance. Key areas include mitochondrial RNA processing, ion channel regulation, and the identification of novel antimalarial drug targets. Her work bridges biochemical, genetic, and pharmacological approaches to understand parasite biology and inform therapeutic strategies. Publications Overview: Her articles highlight advancements in antimalarial drug discovery, including studies on chemical scaffolds (e.g., Garcinia xanthones), combination therapies targeting cytochrome bc1 complexes, and metabolic pathway modulation. These studies underscore the interplay between parasite metabolism and drug efficacy. Lab & Affiliations: Morrisey collaborates with the Institute for Molecular Medicine & Infectious Disease at Drexel, contributing to interdisciplinary efforts in infectious disease research. Her work aligns with global malaria eradication initiatives through drug development and mechanistic insights.

• Genome Evolution
• Endosymbiosis
• Molecular Phylogeny
• +۳ مورد دیگر

Dr. John Archibald is a Professor in the Department of Biochemistry and Molecular Biology at Dalhousie University, Halifax, Canada. He holds the Arthur B. McDonald Research Chair of Excellence and serves as Director of the Institute for Comparative Genomics (ICG). His research focuses on genome evolution, endosymbiosis, and molecular phylogeny, particularly in microbial systems. Dr. Archibald has been a faculty member since 2003 and is affiliated with the Faculty of Medicine and the School of Graduate Studies. He has held roles such as University Research Professor (2016–2021) and has authored over 170 scientific publications and two books, including One Plus One Equals One: Symbiosis and the Evolution of Complex Life . PhD in 2001 from Dalhousie University Postdoctoral research with Patrick Keeling at UBC Leading the Archibald Lab, which studies microbial genomics and symbiotic evolution His research interests include the evolution of plastids, lateral gene transfer, and the genomic footprints of endosymbiosis. Notable achievements include pioneering work on nucleomorph genomes and the role of symbiosis in eukaryotic origins. Dr. Archibald has received prestigious awards such as the CSMB Senior Investigator Award (2024) and Fellowship in the Royal Society of Canada (2017). Recent work includes studies on protist pangenomics, symbiotic genome sequencing, and the evolutionary dynamics of microbial pathogens like monkeypox virus. His lab collaborates on projects like the Aquatic Symbiosis Genomics initiative, aiming to decode symbiotic relationships across life's tree.

• Marine Microbial Ecology
• Biogeochemistry
• Climate Change Impacts
• +۳ مورد دیگر

Dr. Felix Weber is a researcher at the Alfred Wegener Institute (AWI) in the department of Shelf Sea System Ecology , part of the Biosciences school. His work focuses on microbial ecology, biogeochemistry, and plankton dynamics in marine and freshwater systems. He is based at the AWI's marine station on Helgoland, Germany, and leads studies on carbon cycling, microbial interactions, and the impacts of climate change on coastal ecosystems. His research employs cutting-edge techniques like stable isotope probing and Raman microspectroscopy to trace carbon flow and microbial activity in complex environmental systems. Affiliations: AWI Helgoland, Marine Biogeosciences division Key Projects: Baltic Sea protist diversity, Fayetteville Green Lake studies, marine heatwave impacts Research interests span plankton communities , oxygen-deficient systems , and microbial trophic interactions . He has published extensively on topics like protist culturing, carbon dynamics in anoxic lakes, and the effects of global change drivers on marine ecosystems. His team develops novel methods for tracking microbial processes in situ, including advanced microscopy and isotope tracing. Collaborations include international studies on coastal dynamics and redox stratification in freshwater and marine environments.

• Biogeography
• Evolutionary Biology
• Ecology
• +۳ مورد دیگر

Isabel Sanmartín Bastida is a Researcher and Deputy Director of Research and Documentation at the Real Jardín Botánico of the Spanish National Research Council (CSIC). She specializes in biogeography, focusing on evolutionary and ecological processes shaping biodiversity patterns, particularly using Bayesian inference methods and genomic data. Her work addresses macroevolutionary dynamics, island biogeography, and the impact of historical climate change on species distributions. Her research integrates phylogenetic, genomic, and paleoclimatic data to study topics such as plant distribution modeling, extinction patterns in African lineages, and the role of aridification in shaping biomes. Key projects include the ODDMANOUT initiative exploring low plant diversity in tropical Africa and the EUGENIA project on conservation genomics of Euphorbia species. Publications span biogeography, phylogenetics, and evolutionary ecology, with contributions to Journal of Biogeography , Molecular Ecology , and Systematic Biology . She has led multiple research grants and co-authored over 80 peer-reviewed articles. Her work emphasizes bridging micro- and macroevolutionary scales, leveraging Bayesian methods and interdisciplinary approaches. Notable collaborations include studies on insular floras, steppe biota resilience, and the biogeographic history of diverse taxa. She has also contributed to policy frameworks for molecular collections and biodiversity preservation strategies. Her lab at Real Jardín Botánico focuses on advancing methodological tools for biogeographic inference and addressing global biodiversity challenges.

• Microbiology
• Genomics
• Pulmonary Fibrosis
• +۳ مورد دیگر

Xue Yan Peng is a Researcher in the Department of Internal Medicine at Yale School of Medicine. His work focuses on microbial ecology in protists, genomic analysis of myxomycetes, and mechanistic studies of pulmonary fibrosis. Collaborates with teams investigating mitochondrial-TLR9 interactions and adrenergic signaling in fibrotic diseases. Research areas: Microbiome analysis, pulmonary fibrosis pathogenesis, myxomycete genomics Notable collaborations include work with Erica Herzog, Wonnie Ryu, and Huanxing Sun Recent studies explore microbiome composition in plasmodia, TLR9 inhibition strategies for fibrosis treatment, and genome architecture of slime molds. Active in both basic research and translational medicine initiatives.

Julia Engelmannمشاهده پروفایل

پژوهشگر

• Causal network modeling
• Metagenomics
• Marine microbial ecology
• +۵ مورد دیگر

Dr. Julia Engelmann is a Tenure-track Scientist in the Marine Microbiology and Biogeochemistry (MMB) department at the Royal Netherlands Institute for Sea Research (NIOZ) , specializing in causal network modeling, metagenomics, and bioinformatics. Her research focuses on understanding marine microbial interactions through high-throughput data analysis and computational models, particularly in the North Sea, Wadden Sea, and Antarctic waters, with implications for climate change studies. Education: PhD in Bioinformatics (2008) and Diploma in Biology (2004) from German universities. Academic Positions: Senior Scientist at NIOZ (2017-present), Assistant Professor (2013-2017), and Postdoctoral roles in computational diagnostics and oncology. Engelmann applies statistical methods to infer causal relationships between marine microorganisms from observational data, using Bayesian networks and conditional independence analysis. Her work bridges computational biology with experimental validation, aiming to design synthetic microbial consortia for applications like plastic degradation. She contributes to meta-barcoding and metagenomic analyses , developing pipelines like Cascabel for reproducible sequence data processing. Her recent publications examine methane dynamics, microbial lipid biosynthesis, and plastisphere diversity in coastal and polar systems. Scientific Awards NWO Women in Science Excel (WISE) tenure track award Engelmann's research integrates environmental factors (temperature, CO2) into microbial interaction models to predict climate change impacts, collaborating with international teams on Antarctic expeditions.

• Biochemistry
• Molecular Biology
• Evolutionary Genetics
• +۵ مورد دیگر

Carlos Garcia Ferris is an Associate Professor in the Department of Biochemistry at the Faculty of Biological Sciences, Universitat de València, Spain. He is affiliated with the Institute for Biological Systems Integration (I2SYSBIO) and leads research within the GENEVOL Evolutionary Genetics group. His research focuses on molecular and biochemical mechanisms in evolutionary contexts, particularly in photosynthetic organisms. Key areas include the regulation and degradation of key metabolic enzymes such as ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO), with implications for understanding stress responses and molecular adaptation in protists like Euglena gracilis. His work bridges biochemistry, molecular biology, and evolutionary genetics, contributing to fundamental knowledge of metabolic pathway regulation under nutrient stress. Though no recent publications are listed in the provided text, his long-standing affiliation with active research groups indicates sustained scholarly activity. PhD, Universitat de València (1993) He has contributed to training and research supervision, having completed his doctoral studies under Dr. Joaquín Moreno Mariño. While specific advisees and grants are not mentioned, his position suggests involvement in mentoring students and participating in funded research projects through I2SYSBIO. The GENEVOL research group focuses on evolutionary and population genetics, suggesting that Dr. Garcia Ferris contributes to understanding genetic variation, molecular evolution, and adaptive processes in biological systems.

• Bioinformatics
• Evolutionary Genomics
• Microbiology
• +۶ مورد دیگر

Dr. Jamie McGowan is a Lecturer in Genetics at the School of Biomolecular and Biomedical Science, University College Dublin. With an interdisciplinary background in Biology and Computer Science, their research focuses on bioinformatics, evolutionary genomics, and microbial eukaryotes, particularly protists and fungi. They previously held a postdoctoral position at the Earlham Institute, contributing to the Darwin Tree of Life Project. Education: Double Honours BSc in Biology and Computer Science, Maynooth University PhD in Genomics, Maynooth University Research Interests: Bioinformatics Evolutionary Genomics Microbial Eukaryotes Pathogen Genomics Single-Cell Genomics Genetic Code Variants Publications: 15 most recent articles span genomics of yeast strains for biofuel production, genetic code reassignments in ciliates, fungal pathogen effector analysis, and comparative studies of oomycetes threatening global ecosystems.

Aurélie Labarreمشاهده پروفایل

پژوهشگر ارشد

• Oceanography
• Microbial Ecology
• Biogeochemistry
• +۴ مورد دیگر

Aurélie Labarre is a Postdoctoral Fellow at the Department of Biology , Université Laval, focusing on microbial ecology and oceanography within the CFREF Sentinel North project "Last Ice Microbiomes and Arctic Ecosystem Health" . Her work integrates metagenomics and ecological network analysis to study Arctic microbial communities under climate change. Education : Ph.D. in Marine Sciences/Bioinformatics (2020, UPC), M.Sc. in Microbiology/Genomics (2015, Université Laval), B.Sc. in Microbiology (2013, Université Laval) Her research explores biogeochemical cycles (Nitrogen, Carbon, Sulfur), microbial connectivity in ice-covered seas, and the impact of light-driven photosynthesis shifts on nutrient utilization. Recent publications highlight evolutionary diversification of marine predators, phagocytosis mechanisms, and comparative genomics of uncultured microorganisms. Key awards include the H2020 Marie Sklodowska-Curie Actions SINGEK fellowship (2016). Collaborative efforts span institutions like Arizona State University, University of Oslo, and University of Exeter.

• Microbiology
• Genomics
• Protistology
• +۲ مورد دیگر

Sebastian Treitli is a Postdoctoral Researcher at the Max Planck Institute for Terrestrial Microbiology in Marburg, Germany, focusing on the genomics and evolutionary biology of anaerobic protists and their bacterial symbionts. His work investigates mitochondrial loss, reductive evolution, and syntrophic microbial interactions in organisms like Monocercomonoides and Pelomyxa. His research interests span: Microbiology Genomics Protistology Evolutionary Biology Molecular Biology He employs comparative genomics, single-cell metagenomics, and molecular phylogenetics to study metabolic adaptations in amitochondriate eukaryotes and their symbiotic consortia, with emphasis on FeS cluster assembly, hydrogen metabolism, and organelle evolution. Analysis of his 15 publications (2016-2025) reveals a cohesive trajectory: early work characterized mitochondrial loss in oxymonads (2016-2019), progressing to genomic analyses of bacterial symbionts (2019-2022), and culminating in cutting-edge metabarcoding tools and multi-omics consortium studies (2023-2025). His research consistently bridges evolutionary theory with metabolic experimentation, highlighting syntrophy as a key driver in anaerobic eukaryote evolution. No scientific awards are documented in the provided materials. Dr. Treitli shows no evidence of formal student advising or grant leadership in the current dataset, though he collaborates extensively within microbial genomics consortia. He operates within the FG Brune research group at the Max Planck Institute, contributing to projects on microbial evolution in anaerobic environments using advanced genomic techniques and single-cell methodologies.

Michael Givskovمشاهده پروفایل

استاد

• Biofilm Research
• Antimicrobial Resistance
• Bacterial Cell-to-Cell Communication
• +۷ مورد دیگر

Michael Givskov is a Professor of Biomedical Microbiology at the Department of Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen (UCPH). He is also the Managing Director and Founder of the Costerton Biofilm Center at UCPH since 2013, and serves as a consultant for SCELSE in Singapore since 2020. His research focuses on biofilm-related chronic infections and the development of novel anti-biofilm strategies to combat antimicrobial resistance. Education: 1983: Master of Cell Biology (Cand. Scient), University of Southern Denmark 1988: PhD in Microbiology, University of Copenhagen (UCPH), Denmark 2006: Doctor of Technical Sciences (Dr. Techn), Technical University of Denmark (DTU) Professor Givskov's research centers on the biofilm lifestyle that dominates chronic bacterial infections, which tolerate high antibiotic doses and resist immune system action. His work investigates how bacteria control infectious processes through cell-to-cell communication and internal signal transmission. He has pioneered a paradigm shift in antimicrobial treatment, moving away from traditional bacteria-killing strategies toward approaches that disarm pathogens by targeting non-essential phenotypes like bacterial adhesion and signaling mechanisms ($$c\text{-}di\text{-}GMP$$ signaling and quorum sensing), which avoids creating strong selection pressure for resistance development. His research combines molecular infectious biology with chemistry to identify novel anti-biofilm compounds. His recent publications demonstrate a strong focus on Pseudomonas aeruginosa biofilms, $$c\text{-}di\text{-}GMP$$ signaling modulation, and the development of Disperazol, a promising anti-biofilm compound. His work spans fundamental biofilm biology, chemical genetics approaches for identifying bioactive molecules, and translational research moving toward clinical applications. The research has significant implications for treating catheter-associated infections, cystic fibrosis-related infections, and other biofilm-mediated diseases. Scientific Awards: Statoil Research Award (2004) Kirsten and Freddy Johansen's Medical Science & Preclinical Research Award (2014) Ranked among World's Top 2% Scientists 8th Best Scientist at University of Copenhagen Professor Givskov has supervised 29 PhD students and 38 Master's students. He has secured substantial research funding throughout his career, with approximately 69.4 million DKK while at DTU, 76.4 million DKK at UCPH, and approximately 100 million DKK for his Singapore collaboration. His research has resulted in over 306 peer-reviewed publications with more than 60,500 citations and an h-index of 126. He leads the Costerton Biofilm Center at UCPH and has established major collaborations both domestically and internationally. His domestic partners include researchers at DTU and Rigshospitalet, while his international network spans Switzerland, Singapore, Germany, China, and the United Kingdom. His work has translated into multiple patents and spin-out companies, including QSI-Pharma and the upcoming Disperazol company.

• Virology
• Parvoviridae taxonomy
• Wildlife virology
• +۴ مورد دیگر

Marta Canuti is an Assistant Professor in the Department of Veterinary and Animal Sciences, specializing in Veterinary Clinical Microbiology at the University of Copenhagen. She serves as Co-chair of the ICTV Parvoviridae study group, highlighting her expertise in viral taxonomy and classification. Her work bridges veterinary medicine, virology, and public health, with a particular focus on wildlife diseases and their implications for human and animal health. Dr. Canuti's research focuses on viral ecology, particularly in wildlife populations. Her work examines the molecular characteristics, evolution, and transmission dynamics of various viruses, with special attention to parvoviruses and other emerging pathogens. She investigates zoonotic potential of wildlife viruses and their spillover risks to domestic animals and humans. Her research employs molecular techniques, epidemiological approaches, and collaborative surveillance methods to understand viral diversity and disease dynamics in natural ecosystems. Her recent publications demonstrate a strong focus on viral taxonomy, wildlife virology, and emerging infectious diseases. She has made significant contributions to the International Committee on Taxonomy of Viruses, particularly regarding Parvoviridae. Her work spans from fundamental viral classification to applied studies on disease burden and clinical outcomes, showing an interdisciplinary approach that connects basic virology with public health concerns. As Co-chair of the ICTV Parvoviridae study group, Dr. Canuti plays a key role in shaping the official classification and nomenclature of parvoviruses worldwide. This position represents significant recognition of her expertise in this viral family. Dr. Canuti collaborates extensively with researchers across Europe and internationally, as evidenced by her multi-country research projects. Her work often involves interdisciplinary teams combining veterinary, medical, and ecological expertise to address complex questions about viral diseases.

Thomas Hacklمشاهده پروفایل

استادیار

• Evolutionary Bioinformatics
• Genomics
• Virology
• +۳ مورد دیگر

Dr. Thomas Hackl is an Assistant Professor in Eco-Evolutionary Bioinformatics at the University of Groningen's Faculty of Science and Engineering, affiliated with the Groningen Institute for Evolutionary Life Sciences. His research investigates how organisms adapt and diversify through genomic mechanisms, studying processes like horizontal gene transfer in viruses, fungi, and marine microbes. He develops computational tools for genomics data analysis and visualization. Research focuses on: Genomic plasticity in marine cyanobacteria and eukaryotic hosts Viral integration mechanisms and virophage evolution Endophytic fungal biosynthetic pathways Bioinformatics workflow development Publications demonstrate innovations in detecting endogenous viral elements, characterizing marine microbial communities, and fungal secondary metabolism. Recent work reveals virophage retrotransposon colonization, Prochlorococcus genomic diversity, and horizontal gene transfer dynamics. He teaches Ecological & Evolutionary Genomics, Microbiome, and Practical Computing for Biologists, while supervising BSc/MSc research projects and leading the 'Teaching coding effectively' educational initiative.

Timothy J. Niceمشاهده پروفایل

دانشیار

• Host-Microbe Interactions
• Virology
• Immunology
• +۳ مورد دیگر

Timothy J. Nice is an Associate Professor in the Department of Molecular Microbiology and Immunology at Oregon Health & Science University (OHSU). His research focuses on host-microbe interactions in the intestine, particularly how viruses and bacteria interact with host genes and immune responses to influence infection outcomes. The Nice Lab investigates viral and bacterial genes critical for pathogen survival, as well as how microbiota composition modulates anti-microbial immunity. Education: Ph.D. in Molecular and Cellular Biology, University of California, Berkeley (2009) B.S. in Genetics, Cell Biology, and Development, University of Minnesota-Twin Cities (2003) Research Interests: Host-microbe interactions in the gut Viral and bacterial gene determinants of infection outcomes Microbiota-epithelial cell cross-talk in immunity Interferon lambda signaling in intestinal defense Recent Research Trends: Recent work emphasizes norovirus pathogenesis, interferon lambda-mediated antiviral protection, and the role of protists in modulating immune responses. Studies frequently integrate organoid models and genetically engineered mice to explore mechanisms at the host-microbe interface. Laboratory: The Nice Lab operates within OHSU's Molecular Microbiology and Immunology department, focusing on translational studies linking basic immunology to infectious disease outcomes.

Jere H. Lippsمشاهده پروفایل

استاد

• Marine Biology
• Paleontology
• Evolutionary Biology
• +۱۰ مورد دیگر

Jere H. Lipps is a Professor of the Graduate School at the University of California, Berkeley, specializing in marine evolutionary biology and paleontology. His research spans marine protists , particularly foraminifera , with applications in coral reef ecology , environmental history , and astrobiology . He works on molecular phylogeny, taphonomy, and the fossil record to address climate change, mass extinctions, and reef conservation. His publications focus on foraminiferal evolution , reef dynamics , and extraterrestrial habitats . Articles highlight studies in the Pacific Rim, French Polynesia, and the Neoproterozoic, emphasizing photosymbiosis, earthquake history, and planetary science. Collaborative work includes topics like climate change mitigation and scientific education through museums. He contributes to geoheritage and science communication, including books on Lake Merritt and the UCMP. His affiliations include the University of California Museum of Paleontology (UCMP), where he explores fossil site preservation and geotourism applications.