Anne J. Shiu is a Professor in the Department of Mathematics at Texas A&M University. She holds a Ph.D. in Mathematics (2010) from the University of California Berkeley with advisors Bernd Sturmfels and Lior Pachter. Her career includes postdoctoral positions at Duke University (2010-2011) and the University of Chicago (2011-2014), followed by a faculty role at Texas A&M since 2014. Research Focus: Algebraic, geometric, and combinatorial approaches to mathematical biology, specializing in biochemical dynamical systems, neural coding, parameter identifiability, algebraic statistics, and genomics. Academic Contributions: Over 15 recent publications spanning identifiability in compartmental models, multistationarity in reaction networks, convexity analysis of neural codes, and algebraic robustness in biochemical systems. Scientific Recognition: Association of Former Students Distinguished Achievement College-Level Award in Teaching (2019) Invited speaker for Ethel Ashworth-Tsutsui Memorial Lecture (2018-2019) Current Research: Investigates structural identifiability in biological models, focusing on compartmental systems, reaction networks, and neural codes through algebraic methods and computational tools. Her work bridges abstract algebra with practical biological applications, including parameter estimation and robustness analysis. Grant Support: Recipient of NSF CAREER award (2018-2023), prior NSF grants (2010-2017), and Simons Foundation Collaboration Grant (#521874, 2017-2018). Academic Leadership: Organized multiple international workshops/conferences including SIAM conferences and Banff workshop. Currently an Associate Editor for SIAM Journal on Applied Mathematics and serves on the AIM Scientific Research Board.
Yoshua Bengio is a Full Professor at the Université de Montréal, affiliated with the Department of Computer Science and Operations Research at the Faculty of Arts and Sciences. He is a pioneer of deep learning and a leading figure in AI safety. He co-founded Mila – Quebec Institute of Artificial Intelligence and serves as its scientific director. His work focuses on advancing AI technology while addressing ethical and safety challenges, including AI governance and catastrophic risk mitigation. Education: Ph.D. in Computer Science from McGill University (1991), postdoctoral studies at MIT. Research interests include deep learning, causal inference, AI ethics, and responsible AI development. He contributed to the Montreal Declaration for Responsible AI and leads the International Scientific Report on AI Safety. Recent articles emphasize AI safety frameworks, governance, and technical advancements in machine learning. Awards include the Turing Award (2018), Killam Prize (2019), and recognition as TIME's Most Influential Person (2024). He holds prestigious fellowships and is a member of the UN Scientific Advisory Board for Breakthrough Science and Technology. Affiliations include Mila, IVADO (as founding scientific director), and CIFAR programs. His work bridges academia, industry, and policy to ensure AI benefits humanity while minimizing existential risks.
Professor Rosalyn Moran is a Professor of Computational Neuroscience and Deputy Director of King's Institute for Artificial Intelligence at King's College London. She holds roles in the Department of Neuroimaging and School of Neuroscience within the Institute of Psychiatry, Psychology & Neuroscience. Her research focuses on computational neuroscience, computational psychiatry, and neurology, particularly integrating brain connectivity with algorithmic principles like the free energy principle. She explores neurotransmitter roles in decision-making and disease modeling, with applications in artificial intelligence and neurodegenerative disorders. Moran serves as an editor for Neuroimage and collaborates with leading institutions. Key projects include global neuroimaging initiatives (UNITY) and low-field MRI advancements in low-resource settings. Her work bridges Bayesian inference, AI, and neurobiology, with recent emphasis on pediatric neuroimaging and treatment-resistant psychosis. Education & Research Interests Rosalyn Moran's research spans computational psychiatry, neuroimaging techniques, and AI applications in healthcare. Her lab investigates serotonin and dopamine signaling, brain connectivity patterns, and predictive coding frameworks. Notable contributions include modeling NMDA receptor dysfunction in encephalitis and developing super-resolution MRI methods for global health contexts. Grants & Collaborations Funded projects include MRC Human Functional Genomics (2024-2028), NIHR Maudsley BRC (2022-2027), and Gates Foundation initiatives for low-field MRI enhancement. Collaborators include Karl Friston (UCL), Read Montague (Virginia Tech), and Klaas Enno Stephan (University of Zurich). Recent events include presenting the Free Energy Principle's role in generative AI (May 2023). Labs & Teams Her lab focuses on computational psychiatry and AI-driven neuroimaging solutions, collaborating with the King’s Global Health Institute to advance medical imaging accessibility in low-income regions.
Jacob Gardner is an Assistant Professor in the Department of Computer & Information Science at the School of Engineering and Applied Science, University of Pennsylvania. His research bridges machine learning and scientific discovery with emphasis on computational biology and molecular design. His primary research interests include: Machine Learning Bayesian Optimization Computational Biology Molecular Design Artificial Intelligence Gaussian Processes Analysis of his 2024-2025 publications reveals a dominant focus on Bayesian optimization techniques integrated with large language models for biological applications. Key trends include therapeutic design using knowledge distillation from scientific literature, RNA splicing prediction, antibiotic development, and scalable Gaussian process methods. His work consistently addresses dimensionality challenges in molecular modeling while improving computational efficiency for high-dimensional biological data. No scientific awards were mentioned in the provided text. No information regarding student advising or research grants was provided in the source material. His research appears supported by institutional initiatives including Penn AI, Innovation in Data Engineering and Science (IDEAS), and the Data Driven Discovery Initiative (DDDI).
Lisa Wills serves as Assistant Professor of Computer Science at Duke University's Trinity College of Arts & Sciences and holds a joint appointment in Electrical and Computer Engineering at the Pratt School of Engineering since 2019. Her research bridges computer architecture and domain-specific applications, with a focus on hardware acceleration for computationally intensive fields. Dr. Wills earned her Ph.D. from Columbia University in 2014. Her academic journey reflects a deep commitment to advancing hardware-software co-design methodologies for real-world computational challenges. Her research centers on developing efficient hardware accelerators for big data analytics, particularly in genomics, graph processing, and database systems. She pioneers frameworks that simplify accelerator deployment while tackling critical bottlenecks in genomic data analysis, protein structure prediction, and privacy-preserving computing. Current work focuses on hardware-aware machine learning systems and energy-efficient architectures for emerging AI applications. Analysis of her publication record reveals a clear trajectory: from foundational work in database processing units (2014-2016) to specialized genomic accelerators (2019-2021), then evolving toward ML-enhanced design automation (2022-2023) and cutting-edge architectural abstractions (2024-2025). Her research consistently targets the intersection of hardware efficiency and domain-specific computational demands, with increasing emphasis on AI/ML workloads. Google ML and Systems Junior Faculty Award (2025) Dr. Wills actively mentors doctoral students including Chris Kjellqvist (lead architect of Beethoven accelerator framework), Mason Ma (PyTFHE FHE framework), and Mansi Choudhary (COCOSSim accelerator simulator). Her research is supported by significant grants including the NSF AI Institute: Athena ($20M, 2021-2027), Meta-funded ProSE accelerator project (2023-2026), and NSF CAREER award (2021-2026), totaling over $25M in active funding. She directs the APEX Lab (Application-driven Programmable Efficient Accelerated Systems), which develops open-source frameworks like Beethoven for FPGA/ASIC accelerator deployment and focuses on lowering barriers for non-hardware researchers to leverage custom acceleration in genomics, AI, and big data applications.
Miler T. Lee is an Associate Professor at the University of Pittsburgh , focusing on gene regulation during early embryonic development through high-throughput experimental and computational genomics. He earned his Ph.D. in Genomics and Computational Biology in 2009 from the University of Pennsylvania under Dr. Junhyong Kim, followed by postdoctoral work with Dr. Antonio Giraldez at Yale University. Joining the university in 2016, his research spans maternal-to-zygotic transition (MZT), RNA stability, pluripotency networks, and evolutionary developmental biology, utilizing model organisms like zebrafish, Xenopus, and Hydractinia symbiolongicarpus. Key Research Themes: Maternally inherited RNA dynamics during embryogenesis Mechanisms of RNA degradation and transcriptome remodeling Evolution of pluripotency networks in hybrid species Role of zinc signaling in fertilization barriers Computational tools for RNA regulation and sensing Scientific Awards: Pan-American Society for Evolutionary Developmental Biology Junior Faculty Award (2024) Outstanding New Investigator – International Xenopus Board (2023) Basil O'Connor Scholar – March of Dimes (2017-2019) Recent publications highlight his work on enhancer classification, RNA degradation mechanisms, and cross-species MZT comparisons. His lab develops innovative methods like RESA for regulatory sequence analysis and studies evolutionary divergence in RNA localization patterns. While the articles span computational and experimental approaches, they consistently address RNA's role in cellular identity, developmental timing, and evolutionary adaptation. Applications include understanding pluripotency, designing RNA biosensors, and elucidating fertilization barriers. Prospective Ph.D. students are encouraged to contact him for opportunities in gene regulation, development, evo-devo, and computational genomics.
David Hong is an Assistant Professor in the Department of Electrical and Computer Engineering at the University of Delaware. He holds a PhD from the University of Michigan, where he was an NSF Graduate Research Fellow, and previously served as an NSF Postdoctoral Research Fellow at the University of Pennsylvania. His research focuses on developing robust methods for analyzing heterogeneous and high-dimensional data, particularly through low-rank matrix and tensor techniques. Applications span medical imaging, radar systems, genomics, and astronomy. He emphasizes theoretical guarantees and practical algorithms for signal extraction and inverse problems. Education: PhD in Electrical Engineering and Computer Science (University of Michigan), NSF Postdoctoral Research Fellowship (University of Pennsylvania). Research Interests: Low-rank matrix/tensor methods, heterogeneous data analysis, unsupervised learning, and applications in healthcare, imaging, and sensor systems. His work addresses noise robustness, scalable algorithms, and real-world deployment challenges. Scientific Awards: Recipient of the NSF Postdoctoral Research Fellowship (2020) and NSF Graduate Research Fellowship (2015). Advising & Grants: Advisor to graduate students in machine learning and signal processing (no named advisees listed). Active NSF grant recipient for foundational and applied research in data science. Labs/Teams: Engaged in interdisciplinary collaborations through the University of Delaware's Center for Computational Research and Data Science initiatives.
Luke O'Connor is an Assistant Professor of Biomedical Informatics at Harvard Medical School, affiliated with the Department of Biomedical Informatics. He leads the O'Connor Lab, which focuses on the genetic architecture of common diseases, statistical methods development, and translating genetic associations into biological insight. His work bridges computational and experimental approaches to understand the functional and phenotypic effects of genetic variation. Education: O'Connor earned his Ph.D. in Bioinformatics and Integrative Genomics (BIG) from Harvard Medical School in 2019. He was a Schmidt Fellow/Principal Investigator at the Broad Institute of MIT and Harvard before joining Harvard Medical School. Research Interests: His research emphasizes statistical genetics, functional genomics, and the integration of genetic data with phenotypic outcomes. Key areas include analyzing rare and common genetic variants, developing methods for polygenic risk prediction, and studying the impact of genetic perturbations on cellular and disease mechanisms. Grants: He currently leads an NIH-funded project (R35GM155278) investigating the functional and phenotypic effects of protein-coding genetic variation. This work aims to bridge gaps between genomic data and biological understanding. Labs/Teams: The O’Connor Lab collaborates with institutions like the Broad Institute and engages in interdisciplinary projects to advance precision medicine and genetic discovery.
Brian D. Gregory is a Professor of Biology at the University of Pennsylvania's School of Arts & Sciences. His research focuses on RNA modifications, computational biology, and plant genetics, particularly studying how RNA modifications regulate gene expression in plants and animals. He holds a Ph.D. from Harvard University (2005) and a B.S.A. from the University of Arizona (2000). Research Interests: RNA epitranscriptomics (e.g., m6A, NAD+ caps) RNA secondary structure and protein interactions Genomic approaches to study plant stress responses Development of high-throughput sequencing tools like PIP-seq Recent Work Highlights: Recent studies include analyzing pathogen-induced RNA modifications' role in plant immunity (Plant Cell 2023), global RNA structure/protein interaction mapping, and epitranscriptomic dynamics in drought tolerance. His lab's work bridges computational methods with molecular genetics to uncover post-transcriptional regulatory mechanisms. Lab & Collaborations: The Gregory Lab uses Arabidopsis thaliana as a primary model organism but also explores animal systems. They collaborate with institutions like Cornell University and have developed protocols published in Current Protocols in Molecular Biology. Teaching: BIOL 4231: Genome Sciences and Genomic Medicine BIOL 6010: Communication for Biologists
Professor David Taubman is a distinguished academic serving as Professor and Deputy Head of School (Research) at the School of Electrical Engineering and Telecommunications (EE&T) at the University of New South Wales (UNSW) in Sydney, Australia. He is also co-director of Kakadu Software Pty. Ltd. and its affiliates Kakadu R&D and Kakadu GPU. With a career spanning over three decades, Professor Taubman has made significant contributions to the field of image and video compression, most notably as the author of the EBCOT coding algorithm adopted in the JPEG2000 international standard. Professor Taubman earned his B.Sc. in Mathematics and Computer Science (1986) and B.E. (Medal) in Electrical Engineering (1988) from the University of Sydney, followed by an M.Sc. (1992) and Ph.D. (1994) in Electrical Engineering from the University of California at Berkeley. His professional journey includes engineering work at the Electricity Commission of N.S.W. (1988-1990), research positions at Hewlett-Packard Laboratories in Palo Alto (1994-1998), and an academic career at UNSW where he progressed from Senior Lecturer (1998-2003) to Associate Professor (2004-2009) and finally to Professor (2009-present). He has held various leadership roles including Head of the EE&T Telecommunications Research Group (2003-2014), Head of the EE&T Signal Processing Research Group (2014-present), Director of Research for the School of EE&T (2011-2016), and Deputy Head of School (Research) since 2017. Professor Taubman's research interests center on image and video compression, with particular expertise in JPEG2000 standards and implementations. His work spans signal processing, wavelet transforms, scalable video coding, motion modeling, and multimedia systems. He has pioneered numerous compression algorithms and frameworks, including the EBCOT coding algorithm that became central to the JPEG2000 standard. His recent research focuses on efficient motion modeling with cuboidal partitioning, learned lifting-based transform structures, and high-throughput implementations of JPEG2000 for video applications. His work bridges theoretical foundations with practical implementations, as evidenced by the commercially successful Kakadu Software tools that have garnered around 500 commercial licensees. Analysis of Professor Taubman's recent publications reveals a consistent focus on advancing compression technologies with particular emphasis on scalability, efficiency, and adaptability. His work spans traditional image compression (JPEG2000 extensions), video coding (cuboid-based partitioning for UHD/360-degree video), and emerging applications (nanopore sequencing data compression). A notable trend is the integration of machine learning techniques with traditional compression frameworks, as seen in his work on learned lifting-based transform structures. His research maintains strong connections to real-world applications across diverse domains including medical imaging, astronomical data processing, and genomic sequencing. IEEE Fellow Engineers Australia Fellow (by invitation) Professor Taubman has served as Associate Editor for the IEEE Transactions on Image Processing for two four-year appointments (2003-2005 and 2010-2013). He has been actively involved in numerous research grants focused on image and video compression technologies, particularly those related to the JPEG2000 standard and its extensions. His work has received significant industry support, reflected in his consultancy with various U.S., Japanese, and Australian corporations. He has also contributed to international standards development as a member of Standards Australia Technical Committee MS-065 (mirroring ISO TC42 on Digital Photography) and as a constitutional member of Standards Australia Technical Committee IT-029 (Coded Representation of Picture, Audio and Multimedia/Hypermedia Information). Professor Taubman co-directs Kakadu Software Pty. Ltd. and its research affiliates Kakadu R&D and Kakadu GPU, which have developed the commercially successful Kakadu Software tools for JPEG2000. His research group at UNSW focuses on advanced image and video compression techniques, with particular expertise in wavelet-based methods, scalable coding, and motion modeling. The group maintains strong industry connections and has contributed significantly to the development and standardization of image compression technologies worldwide.
Ben Raphael is a Professor in the Department of Computer Science at Princeton University, with affiliations at the Lewis-Sigler Institute for Integrative Genomics, Omenn-Darling Bioengineering Institute, and Center for Statistics and Machine Learning. He is also an Affiliate Faculty member at the Rutgers Cancer Institute of New Jersey, Irving Institute for Cancer Dynamics at Columbia University, and New York Genome Center. His research focuses on computational methods for analyzing large-scale biological data, emphasizing cancer evolution, network/pathway analysis, and structural variation in genomes. Research Trends: His recent work spans cancer lineage trees, spatial transcriptomics, optimal transport for developmental models, and network analysis of mutations. Articles highlight applications in prostate cancer, pancreatic cancer, and single-cell genomics. Scientific Awards: 2024 ACM Fellow 2023 RECOMB Test of Time Award 2022 RECOMB Test of Time Runner-Up 2021 ISCB Innovator Award 2021 RECOMB Best Paper Runner-Up 2020 ISCB Fellow 2020 AACR Team Science Award 2011 NSF CAREER Award 2013 RECOMB Best Paper 2010-2012 Sloan Research Fellowship Advising: He has mentored numerous Ph.D. students and postdoctoral fellows, many of whom have transitioned to academic and industry roles. Current advisees include Uthsav Chitra, Gillian Chu, and Alexander Strzalkowski. Labs & Teams: Raphael leads the Raphael Lab at Princeton, developing tools like HotNet2, CHISEL, and HATCHet for cancer genomics and network analysis.
Nikolaus Rajewsky is a leading Professor at the Max Delbrück Center for Molecular Medicine (MDC) and Charité – Universitätsmedizin Berlin , where he founded and directs the Berlin Institute for Medical Systems Biology (BIMSB) . His lab integrates experimental (biochemistry, molecular biology) and computational (bioinformatics, physics) approaches to study RNA regulation in gene expression , with applications to developmental biology, regeneration, neurodegenerative diseases, and cancer . Using model systems like C. elegans , planaria, and human brain organoids, his team pioneers cutting-edge methods such as MirDeep , DistMap , and FLAM-seq for RNA analysis. His research focuses on single-cell transcriptomics , spatial RNA sequencing , and circular RNA (circRNA) regulation , revealing novel roles for circRNAs like CDR1as in neuropsychiatric disorders. Recent work includes 3D tumor microenvironment mapping and computational modeling of RNA metabolism in diseases. Scientific Awards : Gottfried Wilhelm Leibniz Prize (2012) EMBO Membership (2010) Honorary PhD, Sapienza University of Rome (2014) Berlin Science Award (2009) His team's recent articles highlight breakthroughs in 3D spatial transcriptomics , circRNA degradation mechanisms , and mitochondrial disease modeling using human brain organoids. The lab actively collaborates with clinical partners across Charité and European institutions, driving the LifeTime initiative for cell-based interceptive medicine.
Kushal Dey serves as an Assistant Professor in the Computational and Systems Biology Program at Memorial Sloan Kettering Cancer Center (MSKCC), part of the Graduate School of Medical Sciences in partnership with Weill Cornell Medicine. His research integrates statistical and machine learning approaches with genomic data to understand the regulatory architecture of complex diseases. Dr. Dey's research focuses on developing computational methods that integrate human disease genetics with functional genomics data. His work spans immune-related diseases including Alzheimer's and inflammatory bowel disease, as well as heritable cancers like breast and prostate cancer. His lab develops models to prioritize variants, genes, and cell states for disease using genetic, genomic, and perturbation data, with emphasis on causal directed graphs and benchmarking pipelines informed by disease genetics. His recent publications highlight expertise in GWAS, colocalization, spatial transcriptomics, Perturb-seq, and RNA+ATAC multiome analysis. His work frequently appears in top journals like Nature Genetics, with a focus on single-cell multi-omics approaches to understand disease mechanisms at cellular resolution. Scientific Awards: Josie Robertson Investigator (2023–2028) K99/R00 Pathway to Independence Award (NIH/NHGRI) (2022–2026) NIH/NHGRI Early Stage Investigator R01 (2025-2030) NCI P30 CCSG supplement – 'LLMs in cancer research' (2023-2024) Catalog Working Group Co-chair + Disease Focus Group Lead: IGVF consortium (2023-) Dr. Dey mentors several graduate students through the Weill Cornell Graduate School (WGS), including Thahmina Ali, Pretty Garcia, Karthik Guruvayurappan, Louis Liu, Sarthak Tiwari, Berk Turhan, and Harry Zhang. His lab has received multiple grants including the AWS IMAGINE Grant Children's Health Innovation Award 2024-2025 (as Project Co-lead) and PSRP Developmental Funds Awards (2025: Co-lead). The lab actively collaborates with consortia including ENCODE, ADSP, MorPhiC, and IGVF, maintaining strong ties with Columbia University, Stanford University, and Harvard T.H.Chan School of Public Health. The Kushal Dey Lab is part of the vibrant Tri-Institutional Research campus adjacent to Rockefeller University and Weill Cornell Medical College, offering a collaborative environment focused on computational genomics and disease mechanisms.
Prof. Dr. Jörg Hackermüller is a computational biologist with expertise in Omics data integration Toxicology Environmental risk assessment Non-coding RNA biology . He serves as Head of the Department of Computational Biology and Chemistry at the Helmholtz Centre for Environmental Research (UFZ) since 2024 and holds a Professorship at the Faculty of Mathematics and Computer Science at Leipzig University since 2021. His research focuses on Developing AI methods for chemical toxicity prediction Multi-omics integration for mechanistic toxicology Data standardization in environmental monitoring Non-coding RNAs as biomarkers in disease and toxicity and has produced 15+ recent publications spanning tools like multiGSEA and deepFPlearn+ . He collaborates with teams across UFZ Leipzig University Novartis Fraunhofer Institute and leads projects like InCeTo and SafePol , integrating exposome research with systems biology.
Zixiang Xiong is a Professor and Associate Department Head in the Department of Electrical and Computer Engineering at Texas A&M University, holding the Robert M. Kennedy '26 Endowed Professorship II. He earned his Ph.D. in Electrical Engineering from the University of Illinois at Urbana-Champaign in 1996. His career includes roles at Princeton University, University of Hawaii, and Texas A&M since 1999. Education: Ph.D., Electrical Engineering, University of Illinois at Urbana-Champaign, 1996 Visiting Research Associate, Princeton University, 1995–1997 University of Hawaii, 1997–1999 Research Interests: Focuses on machine learning, image/video processing, federated learning, network information theory, biomedical engineering, and communications. His work spans distributed source coding, genomic signal processing, and energy-efficient systems. Publications & Awards: Over 200 publications, including seminal works on distributed video coding and network information theory. Notable awards include the NSF Career Award (1999), ONR Young Investigator Award (2001), IEEE Fellow (2006), and the ECE Outstanding Faculty Award (2024). His research has led to patents in video compression and multimedia systems. Grants & Advising: Active in NSF-funded projects on coding theory and energy-delay tradeoffs. Advises numerous PhD and MS students, with over 50 alumni in academia and industry. Collaborates on biomedical imaging, remote sensing, and federated learning initiatives. Labs & Teams: Leads a dynamic research group at Texas A&M, focusing on cutting-edge projects in signal processing and machine learning applications. Collaborates with industry and governmental agencies on applied research.
