جست‌وجوی استاد و پژوهشگر

• Bioinformatics
• Machine Learning
• Deep Learning
• +۵ مورد دیگر

Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

• RNA Biology
• Bioinformatics
• Plant Molecular Biology
• +۴ مورد دیگر

Peter Brodersen is a Professor at the Department of Biology, University of Copenhagen , specializing in Bioinformatics and RNA Biology . His research focuses on RNA modification (m6A), YTHDF proteins, and small RNA pathways in plants. Recent research trends from his group include: (1) molecular mechanisms of ARGONAUTE-small RNA interactions, (2) m6A-YTHDF regulatory systems in plant development, and (3) RNAi-independent roles of DICER-LIKE proteins in antiviral defense. Collaborations span Denmark and international institutions. Publications highlight cross-disciplinary work bridging computational biology and experimental plant genetics. Key subfields include RNA structure, epigenetic regulation, and antiviral immunity.

Aberham Hailu Feyissaمشاهده پروفایل

دانشیار

• Food Process Engineering
• Heat and Mass Transfer
• Transport Phenomena in Porous Media
• +۷ مورد دیگر

Aberham Hailu Feyissa is an Associate Professor at the National Food Institute of the Technical University of Denmark , specializing in process modeling and sustainable food engineering. His research bridges complex transport phenomena with practical food manufacturing challenges. Ph.D. in Food Process Engineering, Technical University of Denmark MSc in Food Science, K.U.Leuven and Universiteit Gent BSc in Chemical Engineering, Bahir Dar University His work focuses on coupled mass and heat transfer during solid food processing, aiming to develop robust first-principles models for predictive process optimization. Key applications include Ohmic heating , digital twin technology , and bioactive ingredient extraction . Recent publications highlight his contributions to sustainable food processes , including insect-based feed modeling , seaweed bread kinetics , and clean-label cheese formulation . His methodological innovations span FTIR spectroscopy , computational fluid dynamics , and kinetic modeling . Supervisor for PhD students S. S. Turgut , M. E. Jabali , and Dahal S. Principal Investigator for projects like Modelling and Digitalisation of Food Processes and Sustainable Extraction of Bioactive Insect Fractions Active in conference presentations and peer review , he drives advancements in food process understanding through mechanistic modeling and mathematical simulation .

John M. Woodleyمشاهده پروفایل

استاد

• Biocatalysis
• Bioprocess Engineering
• Enzyme Technology
• +۶ مورد دیگر

John M. Woodley is a distinguished Professor in the Department of Chemical and Biochemical Engineering at the Technical University of Denmark (DTU), where he leads research at the PROSYS - Process and Systems Engineering Centre and contributes to the DTU Microbes Initiative. With over 30 years of experience, he has established himself as a leading expert in biocatalysis and bioprocess engineering, with research spanning both theoretical and experimental work across multiple scales. His primary research interests focus on the interface of bioprocess engineering, process chemistry, and reaction engineering. Dr. Woodley's work encompasses multi-step biocatalysis (including systems biocatalysis and flow chemistry), downstream processing from biocatalytic reactors and fermentations (including ISPR), modeling tools for bioprocess assessment (thermodynamics, kinetics, process simulation, economic evaluation), and bio-oxidations (including oxygen supply methods). His enzymatic investigations particularly target alcohol oxidases, carbohydrate oxidases, cytochrome P450s, Baeyer-Villiger monooxygenases, and transaminases. His research portfolio demonstrates consistent innovation in sustainable chemical production, with particular emphasis on enzymatic synthesis of pharmaceuticals and chemicals from renewable resources. Analysis of his recent publications reveals a strong focus on overcoming industrial implementation challenges, particularly regarding enzyme stability in various reactor environments, optimization of multi-enzyme systems, and scale-up methodologies for biocatalytic processes. Dr. Woodley actively supervises multiple PhD students and leads several significant research projects, including 'P450-based biocatalytic processes for the pharmaceutical industry' (2025-2028), 'Integrated model for up- and downstream bioprocess intensification' (2024-2027), and 'ENFACE: A tool for prediction of enzyme stability at gas-liquid interfaces' (2024-2027). His work has resulted in an impressive publication record of 781 research outputs across various formats, including journal articles, book chapters, and conference proceedings. His research group operates within the Department of Chemical and Biochemical Engineering at DTU, utilizing advanced facilities for biocatalysis research, including specialized reactor systems for studying gas-liquid interfaces, computational modeling resources, and laboratories for enzyme characterization and bioprocess development. Through his leadership in the PROSYS center, he contributes to DTU's strategic focus on sustainable process technologies and systems engineering.

• Robotics
• Mechatronics
• Ferrofluids
• +۳ مورد دیگر

Zoran Cenev holds a Tenure Track Assistant Professor position within the Mechatronics and Dynamics section of the Department of Mechanical and Production Engineering at the School of Engineering, Aarhus University. His primary institutional affiliation is with AU Engineering, and contact details include email zoran.cenev@mpe.au.dk and telephone +45 20 64 75 44, with office location Aarhus N, 5128-140. Research interests focus on interdisciplinary applications of magnetic and robotic systems: Robotic micromanipulation via electromagnetic needles Ferrofluid-based biofabrication for skeletal muscle engineering Laser-induced photothermal droplet control Theoretical modeling of particle dynamics at fluid interfaces Surface engineering for underwater metallic stability Nanostructure formation through ion bombardment His recent publications (2023-2025) reveal a dominant trend in adapting ferrofluids for biomedical automation, particularly 3D bioprinting of magnetically responsive tissues and droplet manipulation on engineered surfaces. This work bridges mechanical engineering with regenerative medicine, emphasizing practical implementations of theoretical models for microscale precision. Scientific awards are not documented in the provided information. As a faculty member, Dr. Cenev likely mentors graduate students and pursues research grants, though specific advisees or funding details are absent. Departmental laboratories and workshops support his experimental work in mechatronics, with emphasis on magnetic manipulation systems and surface characterization.

Jens S. Andersenمشاهده پروفایل

استاد

• Proteomics
• Quantitative Mass Spectrometry
• Cell Biology
• +۱۱ مورد دیگر

Jens S. Andersen is a Professor in the Department of Biochemistry and Molecular Biology at the University of Southern Denmark, where he leads research in Biomedical Mass Spectrometry and Systems Biology. His work is centered on the development and application of quantitative mass spectrometry and microscopy-based proteomics to study human cell biology, particularly the structure and function of organelles such as centrosomes, cilia, autophagosomes, and mitochondria. His research focuses on determining the protein composition and dynamic properties of cellular organelles, the roles of specific protein groups, and their contributions to biological processes and diseases. He investigates cell signaling mediated by post-translational modifications, especially within the DNA damage response, autophagy, and immune systems. His lab, the Jens S. Andersen Lab, is part of the Research Section of Biomedical Mass Spectrometry. The analysis of his recent publications reveals a strong interdisciplinary trend combining proteomics, structural biology, and cell signaling. His work spans cilia biology, RNA metabolism, DNA repair, and cancer mechanisms, with frequent use of advanced techniques like mass spectrometry, CRISPR, and live-cell imaging. The integration of systems biology approaches is evident across his research outputs. Professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark Head of Research, Biomedical Mass Spectrometry and Systems Biology Principal Investigator, Jens S. Andersen Lab ORCID: 0000-0002-6091-140X While no specific scientific awards are mentioned in the provided texts, his extensive publication record in high-impact journals such as Science , Nature Communications , Molecular Cell , and EMBO Journal reflects significant scholarly contributions. He has supervised research projects and collaborated widely across Europe, though specific names of students are not listed. His research is supported by multiple ongoing projects, reflecting sustained funding and academic leadership. The Jens S. Andersen Lab operates at the intersection of proteomics and cell biology, contributing to fundamental understanding of organelle dynamics and disease mechanisms. The lab's work is highly collaborative, involving partnerships with groups in structural biology, RNA research, and cancer biology.

Konstantinos Kalogeropoulosمشاهده پروفایل

استادیار

• Proteomics
• Snake Venom Research
• Protein Structure Prediction
• +۳ مورد دیگر

Konstantinos Kalogeropoulos is an Assistant Professor at the Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU), leading research at the Cell Diversity Lab. His work bridges proteomics, computational biology, and snake venom research. Current projects: "The Proteomic Landscape during Influenza Infection" (2022-2025) Supervisor for PhD projects on protease network rewiring in psoriasis and wound exudate degradomics Research interests include: Proteomic analysis of inflammatory diseases Snake venom toxin structure prediction Extracellular matrix biomechanics De novo peptide sequencing algorithms Computational modeling of protease networks Recent article trends demonstrate his work in • Database-free proteomics (InstaNovo/InstaNexus) • Snake venom pathophysiology (V-ToCs clustering) • Inflammatory disease biomarkers (psoriasis, impaired healing) • Extracellular matrix mechanics (fibronectin tension, gut inflammation) Advising: Supervises PhD students Polhaus, C. J. M. and Haack, A. M., focusing on protease networks and wound healing.

• Machine Learning
• Bioinformatics
• Deep Generative Models
• +۳ مورد دیگر

Anders Krogh is a Professor at the Department of Computer Science, University of Copenhagen, and also holds a position at the Department of Public Health in the Section for Health Data Science and AI. He serves as the head of the Center for Health Data Science (HeaDS) in the Faculty of Health and Medical Sciences. Previously, he was affiliated with the Department of Biology at the University of Copenhagen until 2020. Dr. Krogh earned his PhD in theoretical physics but transitioned into machine learning and bioinformatics during his doctoral studies. His research spans both theoretical foundations and practical applications in these fields. He is particularly renowned for his pioneering work on hidden Markov models for biological sequences, which has had significant impact in computational biology. In recent years, Krogh's research has focused on deep generative models applied to gene expression data and other biomedical applications. His work bridges computer science with healthcare, developing AI-driven approaches for precision medicine, cancer diagnostics, and analysis of complex biological systems. His current research integrates machine learning with quantum computing applications in biomolecular modeling. Analysis of his recent publications reveals a strong trend toward applying artificial intelligence to healthcare challenges, particularly in rare diseases, cancer diagnostics, and personalized medicine. His work increasingly incorporates federated learning approaches to address privacy concerns while enabling collaborative research across institutions. There's also a growing emphasis on quantum computing applications in biomolecular modeling and drug discovery. As head of the Center for Health Data Science, Krogh leads interdisciplinary research efforts that bring together computer scientists, medical researchers, and clinicians. His team develops novel computational frameworks like MOSAIC for multimodal analysis of rare cancers and multiDGD for multi-omics data integration. These tools are designed to translate AI innovations into clinical practice while addressing the unique challenges of medical data.

• Lipid-protein interactions
• Biomimetic membranes
• Membrane transport
• +۳ مورد دیگر

Claus Hélix-Nielsen is a Professor and Head of Department at the Department of Environmental and Resource Engineering, DTU Sustain, Technical University of Denmark. His research focuses on lipid-protein interactions, biomimetic membranes, membrane transport, and membrane channel proteins, utilizing electrophysiology, fluorescence spectroscopy, and computational modeling. Current Position: Professor and Head of Department Institution: Technical University of Denmark Research Unit: DTU Sustain Department: Environmental and Resource Engineering Research Interests: Dr. Hélix-Nielsen investigates how the hydrophobic coupling between transmembrane proteins and lipid bilayers regulates protein function through bilayer mechanical properties. His work also explores how these properties influence membrane dynamics, including vesiculation. He develops biomimetic membranes for biosensor and separation technologies, employing advanced techniques like Raman spectroscopy and molecular dynamics simulations. Recent Publications Trends: His 15 most recent articles emphasize biomimetic membrane engineering, membrane biophysics, and applications in environmental and biomedical fields. Topics range from artificial ion channels and drug delivery systems to computational modeling of lipid-protein interactions and environmental monitoring sensors. Techniques: Key methodologies include electrophysiology, fluorescence spectroscopy, electron paramagnetic resonance, Raman spectroscopy, and molecular dynamics simulations.

Jens Øllgaard Duusمشاهده پروفایل

استاد

• NMR Spectroscopy
• Analytical Chemistry
• Structural Chemistry
• +۱۲ مورد دیگر

Jens Øllgaard Duus is a Professor and Vice Dean at the Technical University of Denmark (DTU), with dual roles in the Office for Study Programmes and Student Affairs and the Center for Teaching and Learning in Engineering Education. His primary academic affiliation is with the Department of Chemistry at DTU, where he conducts advanced research in NMR spectroscopy and structural analysis of complex organic molecules. His research focuses on the development and application of analytical methods for carbohydrates, natural products, and peptides, with applications in food and pharmaceutical sciences. Key areas include glycosylation, enzyme mechanisms, and structural elucidation of bioactive compounds. His work contributes to UN Sustainable Development Goals in life sciences and analytical chemistry. The recent publications highlight a strong trend in glycoscience, particularly in enzyme-catalyzed glycosylation, structural analysis of polysaccharides, and engineering of glycosyltransferases and glycosidases for synthetic applications. His work bridges chemistry, biotechnology, and medicine. Jens Øllgaard Duus actively supervises multiple PhD students across interdisciplinary projects, including work on drug delivery to the CNS, nucleic acid analogues, and AI in education. He is involved in both fundamental and applied research, contributing to sustainable chemistry and biotechnology. Structural elucidation of novel pro-inflammatory polysaccharides from Daphne mezereum L. (2024) Denmark as the Energy Island Pioneer (2023) Promiscuous Yet Specific: A Methionine-Aromatic Interaction in Glycosyltransferase (2023) Engineered Hexosaminidase as a Glycoligase (2023) Family 1 Glycosyltransferase from Zea mays (2022) He has supervised PhD projects on generative AI in education, nucleic acid analogues, CNS drug delivery, and asymmetric catalysis. His leadership in educational innovation and research supervision underscores his dual impact on science and pedagogy. He is affiliated with research groups in chemistry and biotechnology at DTU, contributing to a collaborative network focused on sustainable science and engineering education. His work integrates analytical chemistry with biological applications, forming a unique interdisciplinary fingerprint.

Erwin Schoofمشاهده پروفایل

دانشیار

• Proteomics
• Mass Spectrometry
• Single-Cell Analysis
• +۷ مورد دیگر

Erwin Schoof is an Associate Professor at the Department of Biotechnology and Biomedicine , Technical University of Denmark. He leads the Cell Diversity Lab and focuses on advancing proteomics and mass spectrometry technologies. Expertise in single-cell proteomics , stem cell niches , and bioinformatics . Active in myelofibrosis and leukemia research , with applications in UN Sustainable Development Goals . Research Trends from 2025–2024 include: Machine learning-driven peptide sequencing (InstaNovo, InstaNexus). Single-cell resolution tools for mapping hematopoietic stem cells and tumor microenvironments . Biomarker discovery in chronic diseases and respiratory conditions . Supervision : Mentors multiple PhD students on single-cell proteomics , omics data analysis , and biotherapeutic production . Labs & Collaborations : Collaborates with international teams on plasma proteomics , 3D bioengineering , and advanced mass spectrometry workflows .

Thomas J. D. Jørgensenمشاهده پروفایل

دانشیار

• Mass Spectrometry
• Hydrogen/Deuterium Exchange
• Protein Structural Dynamics
• +۷ مورد دیگر

Thomas J. D. Jørgensen is an Associate Professor and Head of the Research Section of Biomedical Mass Spectrometry at the Department of Biochemistry and Molecular Biology, University of Southern Denmark. He leads an active research group focusing on protein structural dynamics using mass spectrometry and hydrogen/deuterium exchange methodologies. His research interests lie at the intersection of biochemistry, structural biology, and systems biology, particularly in understanding how protein dynamics govern function and dysfunction in diseases such as Parkinson’s and metabolic disorders. He employs advanced mass spectrometry techniques to study conformational changes, protein-protein interactions, and enzyme regulation, with a strong emphasis on lipoprotein metabolism and neurodegenerative disease mechanisms. The most recent articles highlight a consistent focus on protein dynamics in lipid metabolism, conformational diseases, and glycoprotein analysis, utilizing hydrogen/deuterium exchange mass spectrometry (HDX-MS) and related techniques. Themes include allosteric regulation of enzymes, protein unfolding, and structural phenotyping of disease-related aggregates. Member of the evaluation committee at the Swedish Research Council (2015) Chairman of multiple PhD evaluation committees (2014) Editorial and peer-review contributions to the scientific community He currently supervises PhD students and is involved in several major research projects funded by organizations such as the Michael J. Fox Foundation and Novo Nordisk Fonden. His lab, the Thomas J. D. Jørgensen Lab, includes postdoctoral researchers, academic staff, and industrial PhD students, fostering a collaborative and interdisciplinary research environment focused on biomedical mass spectrometry and systems biology.

• Genome Integrity
• Structural Molecular Biology
• CRISPR-Cas Systems
• +۳ مورد دیگر

Professor Guillermo Montoya is a Research Director and Group Leader at the Protein Structure & Function Program of the Novo Nordisk Foundation Center for Protein Research (CPR), University of Copenhagen, Denmark. His work focuses on unraveling cellular mechanisms at the atomic level through advanced methodologies including X-ray crystallography and cryo-electron microscopy. PhD in Chemistry, University of Zaragoza (1989–1993) MSc in Biochemistry, University of the Basque Country (1984–1989) Montoya's research spans Structural Molecular Biology and Genome Integrity , with specific emphasis on: Activation mechanisms of oligomeric kinases CRISPR-Cas12a conformational dynamics Macromolecular complexes in telomere maintenance His publications reveal significant contributions to CRISPR-Cas systems , kinase activation , and DNA/RNA degradation mechanisms . Scientific Awards: EMBO Member (2018) Spanish National Prize in Biomedicine (2009) Multiple Fellowships (EMBO, Marie Curie, FEBS, Marie Curie) Montoya's group integrates structural biology with cell biology to address fundamental questions in genome stability and biomedical applications. His work has been cited over 188 times for studies on CRISPR-Cas endonucleases and has attracted attention from 41 patents.

Ditte Hededam Welnerمشاهده پروفایل

پژوهشگر

• Enzyme Engineering
• Structural Biology
• Biocatalysis
• +۴ مورد دیگر

Ditte Hededam Welner is a Senior Researcher & Group Leader at the Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark. Her research focuses on Enzyme Engineering and Structural Biology, particularly the development of enzyme biocatalysts for sustainable industrial production of natural products like aromas, dyes, and pharmaceuticals. She leads efforts to replace petroleum-based chemical synthesis with eco-friendly bio-based processes, emphasizing glycosyltransferase (GT) engineering to enhance substrate specificity, efficiency, and stability. Education: Biochemistry, University of Copenhagen (2000–2011). Research Interests: Glycosylation mechanisms, high-throughput enzyme discovery/evolution, structural biology techniques (X-ray crystallography, NMR), and biocatalysis applications in sustainable chemistry. Her work contributes to UN SDG 9 (Industry, Innovation, and Infrastructure) and SDG 12 (Responsible Consumption and Production). Recent publications highlight advancements in alginate degradation mechanisms, sucrose synthase engineering, and glycosyltransferase applications in biocatalytic routes for indigo/indican production. She supervises multiple PhD projects on enzyme optimization, machine learning for enzyme engineering, and sustainable bioprocessing. Professional Activities: Peer review for journals like Nature Catalysis and Metabolic Engineering , conference organization, and editorial contributions. Active in promoting open-access science and sustainable biotechnology. Labs/Teams: Leads the Enzyme Engineering and Structural Biology group at DTU, collaborating with industry and academic partners globally to advance biocatalytic solutions for environmental challenges.

David E. Gloriamمشاهده پروفایل

استاد

• G Protein-Coupled Receptors (GPCRs)
• Computational Drug Discovery
• Biostructural Research
• +۶ مورد دیگر

Professor David E. Gloriam is a leading expert in G protein-coupled receptors (GPCRs) at the University of Copenhagen , Department of Drug Design and Pharmacology. Recognized as a top 1% Clarivate Highly Cited Researcher, he leads GPCRdb, a major database with >50,000 annual users, and develops computational tools like GPCRgraphs for drug discovery. His innovation roles include Senior Scientific Expert at Kvantify A/S and applications in pharmaceutical industry tools with patent citations. Education: Ph.D. in Medicine (Uppsala University, 2006), M.Sc. in Pharmaceutical Sciences (Uppsala University, 2003) Leadership: Head of GPCRdb (2014–), EU COST Actions member (2014–17), and institutional leadership roles in Pharmaceutical Data Science unit and Research Leadership Forum Research Interests: His work spans computational modeling of GPCR dynamics, virtual screening methods for inaccessible receptors, pharmacogenomics (PGxDB platform), and biased signaling for safer drugs. He integrates structural biology, data science, and bioinformatics to advance pharmaceutical discovery. Awards: Clarivate Highly Cited Researcher (2022) IUPHAR Analytical Pharmacology Award (2023) Lars Arge Prize for Big Data (2021) UCPH Forward Talent Program (2019) ERC Starting Grant (2014) Teaching & Supervision: Teaches Molecular Pharmacology and AI in Drug Discovery , and supervises 3 current PhD students. He has mentored 13 PhDs and 14 Postdocs, with former members attaining tenured academic or industry roles.