جست‌وجوی استاد و پژوهشگر

Mark Yandellمشاهده پروفایل

عضو هیئت علمی

• Bioinformatics
• Comparative Genomics
• Genome Annotation
• +۷ مورد دیگر

Mark Yandell is a Professor of Human Genetics and Adjunct Associate Professor of Biomedical Informatics at the University of Utah School of Medicine. His research integrates computational biology and experimental molecular genetics to address challenges in genome annotation, comparative genomics, and sequence variation analysis related to human disease. Education: B.S. from University of Texas, Austin; Ph.D. from University of Colorado, Boulder. Research Focus: Genome annotation, high-throughput biological image analysis, and genomic correlates of human diseases using Utah Population Database and Utah Genetic Reference Project. Collaborations: Co-developed the MAKER genome annotation pipeline with Prof. Alejandro Sánchez Alvarado; leads the Utah NeoSeq Project for neonatal genomic diagnostics. Technical Contributions: Organized acquisition of BD Pathway Bioimager for RNAi screening in S. mediterranea , a flatworm model for regenerative medicine. His lab bridges computational and experimental approaches, emphasizing training opportunities at the intersection of computer science and molecular genetics. Recent publications highlight applications of machine learning and AI in neonatal diagnostics, fetal growth restriction, and disease risk stratification. Key Affiliations : Human Genetics, Biomedical Informatics, University of Utah School of Medicine.

Lloyd M. Smithمشاهده پروفایل

استاد

• Mass Spectrometry
• Proteomics
• Bioinformatics
• +۳ مورد دیگر

Lloyd M. Smith is the W. L. Hubbell Professor and Hall-Fischer Professor of Chemistry at the University of Wisconsin–Madison. His research focuses on developing cutting-edge proteomics technologies that bridge biology, chemistry, and computational analysis. Key research areas include comprehensive proteoform identification Development of tools like ProteaseGuru, MetaMorpheus, and FlashLFQ Applications in neurodegenerative diseases (Alzheimer's), viral biology (HIV), and diabetes Research trends show strong emphasis on: Mass spectrometry innovations RNA-protein interaction networks Proteoform family concept development Machine learning integration in proteomics

• Colorectal Cancer
• Lynch Syndrome
• Hereditary Cancer Syndromes
• +۵ مورد دیگر

Inge Bernstein serves as Chief Medical Consultant at Aalborg University Hospital within the Faculty of Health Sciences. She maintains active roles in hospital administration and clinical leadership while contributing significantly to research in hereditary colorectal cancer. Affiliation: Aalborg University Hospital, Faculty of Health Sciences Position: Chief Medical Consultant Leadership: Forum for Leading Senior Physicians AaUH (2015-2019), Danish Surgical Society Board of Directors (2013-2019) Dr. Bernstein's research focuses on hereditary cancer syndromes, particularly Lynch syndrome and colorectal cancer genetics. Her work spans clinical management of hereditary cancer, colonoscopy quality metrics, cancer surveillance protocols, and translational research connecting DNA mismatch repair mechanisms to clinical outcomes. She has pioneered methods for diagnosing hereditary colon cancer and investigating stool-based cancer detection. Analysis of her recent publications reveals a strong emphasis on practical clinical applications of genetic research, with particular attention to optimizing colonoscopy protocols for Lynch syndrome patients, understanding cancer risk stratification, and improving long-term outcomes for hereditary cancer patients. Her work bridges molecular genetics with clinical practice through large international collaborations like the Prospective Lynch Syndrome Database. Professional Committee - Danish Comprehensive Cancer Center (2020-present) Working group Colonoscopy education - DKS & DSGH (2019-present) HU Recruitment Committee Surgery REGION NORTH & SOUTH (2014-present) Dr. Bernstein has been featured in multiple media outlets discussing her research on hereditary colon cancer diagnosis and stool-based cancer detection methods, demonstrating her commitment to translating complex medical research for public understanding.

• Community Ecology
• Invasive Species Biology
• Plant-Soil Interactions
• +۵ مورد دیگر

Jean Burns is a Professor in the Department of Biology at Case Western Reserve University (College of Arts and Sciences). Her research focuses on integrating phylogenetic history, dispersal ecology, and population demography to understand species distributions and community assembly mechanisms, particularly using invasive species as model systems. Studies plant-soil-microbe interactions across Rhododendron species Investigates climate change impacts on plant demography Develops ecological restoration protocols Employs field experiments, greenhouse studies, and computational modeling Her lab actively engages in collaborative research with public gardens and maintains a global focus on plant invasion dynamics. Contact: jbm122@case.edu | DeGrace Hall, Room 307 | Burns Ecology Lab

Lisha Shaoمشاهده پروفایل

استادیار

• Neurobiology of Reward
• Drosophila Genetics
• Neural Circuits and Behavior
• +۳ مورد دیگر

Lisha Shao is an Assistant Professor in the Department of Biological Sciences at the University of Delaware, affiliated with the College of Arts & Sciences. Her research focuses on the neurobiology of reward systems, specifically investigating how sensory signals are transformed into reward perception in Drosophila melanogaster . She leads the Shao Lab, which employs neurogenetic, behavioral, and circuit-mapping approaches to study reward valuation, stress-reward interactions, and decision-making processes. Education: B.S. in Biological Sciences from Nankai University, Ph.D. in Neuroscience from Tsinghua University, and a postdoctoral fellowship at Janelia Research Campus, HHMI. Current research projects include mapping neural circuits underlying female mating valence, dopamine neuron function, and stress effects on reward pathways. Her work integrates molecular, cellular, and systems-level analyses to address fundamental questions in reward neuroscience. The lab's research has implications for understanding behavioral adaptations, mental health disorders, and neural plasticity. The Shao Lab actively collaborates with institutions globally and maintains a dedicated research website.

• Ecology
• Biochemistry
• Mathematics
• +۴ مورد دیگر

Bob M. Oscar is a Professor affiliated with the VIVO Demo Instance. His academic work spans multiple disciplines including Ecology, Biochemistry, Mathematics, Medical Sciences, Library Science, Materials Science, and Statistics. Dr. Oscar's research interests focus on ecological systems, mathematical modeling, medical sciences, and information systems. His work demonstrates interdisciplinary approaches that bridge traditional academic boundaries, with particular emphasis on marine ecology, cellular biology, and data science applications across multiple domains. Analysis of his publication record shows consistent research output from 1979 through 2016 across prestigious journals including Science, Nature, Cell, Journal of Ecology, New England Journal of Medicine, and Acta Mathematica. His work demonstrates a pattern of interdisciplinary research with connections between biological systems, mathematical modeling, and information science. Dr. Oscar has collaborated with researchers across multiple institutions, with co-authors including Lauren K. Hermann, Izzy F. Laon, Xerxes Yiola, Sara R. Nunes, Kristi V. Ithimore, and Pedro N. Oscar. His 1996 publication in the Journal of Biochemistry covered diverse subject areas including Baseball, British Royal Navy, Cubism, and Obstetrics, highlighting his interdisciplinary approach.

• Alpine plant ecology
• Climate change impacts on mountain ecosystems
• Functional seed trait ecology
• +۴ مورد دیگر

Manuela Winkler is a Priv.-Doz. Dr. (equivalent to Associate Professor) at the University of Natural Resources and Life Sciences, Vienna (BOKU) , affiliated with the Department of Ecosystem Management, Climate and Biodiversity . She holds teaching authorization in ecology and evolution of plants and is actively involved in both research and teaching at BOKU. Her research focuses on alpine plant ecology , climate change impacts , functional seed trait ecology , and long-term vegetation monitoring . She is a key contributor to the GLORIA (Global Observation Research Initiative in Alpine Environments) network and has conducted extensive fieldwork in the European Alps and beyond. Her work spans community assembly processes , polyploidy and speciation , phylogeography , and plant–environment interactions across elevation gradients. She has published extensively in high-impact journals, with over 50 peer-reviewed articles since 2005, many of which are co-authored with international collaborators. Scientific Contributions: Led long-term alpine vegetation monitoring across Europe Developed novel methodologies for analyzing plant functional traits and community dynamics Investigated the role of microclimates and microtopography in shaping alpine plant distributions Contributed to global databases such as SoilTemp, ReSurveyEurope, and GrassPlot Advising & Collaborations: While specific student names are not listed, her extensive publication record indicates active supervision and collaboration with graduate students and postdocs. She is involved in international research networks and has coordinated cross-site comparative studies across European mountain ranges. Labs & Teams: She is associated with the gGLORI research group at BOKU, which focuses on alpine biodiversity and climate change. Her work is supported by long-term monitoring infrastructure and collaborative projects across Austria and Europe.

• Maize Genetics
• Plant Genomics
• Germplasm Resources
• +۳ مورد دیگر

Martin M Sachs serves as an Assistant Professor in the Department of Crop Sciences at the University of Illinois and a Scientist with the USDA Agricultural Research Service, focusing on maize (Zea mays) genetics and genomics. His work bridges agricultural science and molecular biology through investigations into plant stress responses, germplasm conservation, and bioinformatics infrastructure development. Research interests prominently feature maize genetics, plant anaerobiosis mechanisms, and germplasm resource management. His fingerprint analysis reveals core specializations in alcohol dehydrogenase function (29%), anoxia tolerance (22%), and gene expression under oxygen deficiency (21%), with significant contributions to understanding metabolic adaptations in low-oxygen environments. Recent publications demonstrate sustained focus on maize genomics, including the 2024 discovery of the PTOX locus controlling kernel carotenoid content and the 2019 MaizeGDB database expansion enabling multi-genome analysis. These works reflect interdisciplinary integration of molecular biology, bioinformatics, and crop physiology to address agricultural challenges. Scientific Awards: No specific awards, fellowships, or medals were documented in the source material. Advising and grants: The available text contains no information regarding student mentorship, research funding, or grant administration activities.

Katalin Terezia Ferencمشاهده پروفایل

پژوهشگر ارشد

• Computational Biology
• Genomics
• Bioinformatics
• +۳ مورد دیگر

Katalin Terezia Ferenc is a Research Fellow at the Norwegian Center for Molecular BioMedicine (NCMBM), University of Oslo, affiliated with the Faculty of Mathematics and Natural Sciences. She is part of the Anthony Mathelier Group focusing on Computational Biology & Gene Regulation. Her current project involves developing deep learning models to stratify breast cancer subtypes based on transcriptional regulation. Education includes a BSc in Biology from Eötvös Loránd University, an MSc in Biomedicine from the Karolinska Institute, and an MSc in Applied Data Science from the University of Gothenburg. Research interests span computational biology, genomics, and machine learning applications in cancer biology. Previous work includes DNA FISH probe design, analysis of DNA double-strand breaks in ovarian cancer, predictive modeling of drug-induced mitochondrial toxicity, and characterization of DRUG-seq techniques. She actively contributes to improving bioinformatics software quality and open-access resources like the JASPAR database. Publications highlight her expertise in computational methodologies, collaborative research practices, and transcription factor analysis. She is a member of the Mathelier Group, emphasizing interdisciplinary approaches to molecular biology challenges.

Colm Nestorمشاهده پروفایل

دانشیار

• Epigenetic Control of Human T-cell Biology
• Autoimmunity and Allergy
• Cancer (Hematology and Other Tumors)
• +۳ مورد دیگر

Colm Nestor is a Senior Associate Professor at Linköping University, Sweden, affiliated with the Faculty of Medicine and Health Sciences, Department of Biomedical and Clinical Sciences, and the Division of Children's and Women's Health. His research focuses on epigenetic control of T-cell biology, sex differences in disease susceptibility, and developing therapies targeting DNA methylation. He holds leadership roles including Chair of the Junior Faculty Club, Co-Chair of the Centre for Personalised Medicine, and Member of the Academic Employment Board. Education highlights include a B.A. in Natural Sciences from Trinity College Dublin, followed by M.Sc. degrees in Computer Science (University of Cork) and Bioinformatics (University of York). He earned his Ph.D. in 2003 from the University of Glasgow. Postdoctoral training includes roles at the University of Edinburgh and Linköping University, alongside industry experience as a Bioinformatics Specialist at DeCODE Genetics and a Database Developer at LION Biosciences. Research interests center on understanding how the X-chromosome and DNA methylation influence health, particularly in autoimmune diseases, infections, and cancers like childhood leukemia. He investigates sex-specific disease mechanisms and leverages systems medicine to identify diagnostic/therapeutic targets. His work also addresses methodological flaws in epigenetic research, such as the widely used DIP-seq method. Recognized with prestigious awards: the 2025 Onkel Adam Prize and an ERC Consolidator Grant (2020) for sex-bias research. He also received funding from the Joanna Cocozza Foundation for pediatric medicine studies. Current projects include studying TET2 reactivation in leukemia and epigenetic changes in pregnancy-related T-cell dysfunction. Nestor advises four PhD students and collaborates with researchers like Huan Zhang (Principal Research Engineer) and Antonio Lentini (Researcher). He contributes to teaching at the Medical Program, Experimental Biosciences M.Sc., and Ph.D. courses. His lab, The Nestor Lab , integrates epigenetic, genomic, and computational approaches for clinical impact.

Stanisław Dunin-Horkawiczمشاهده پروفایل

پژوهشگر

• Computational Biology
• Protein Structure and Function
• Molecular Evolution
• +۳ مورد دیگر

Dr. Stanisław Dunin-Horkawicz is affiliated with the University of Warsaw's Laboratory of Structural Bioinformatics. His research focuses on computational methods to study protein sequences, structures, and functions, with emphasis on machine learning applications, evolutionary origins of protein families, and fibrous proteins like coiled-coil domains. He leads a systems biology project on molecular pathways related to multicellularity (NCN OPUS grant 2020/37/B/NZ2/03268). Key contributions include developing tools like DeepCoil for coiled-coil prediction, pLM-BLAST for homology detection, and localpdb for protein structure management. His work spans structural bioinformatics, protein engineering, and evolutionary biology, addressing topics such as HAMP domain signaling, RNA structure prediction, and viral protein evolution. Collaborative projects involve international teams and cutting-edge methods like AlphaFold2 for protein modeling. His research has implications for understanding neurodegenerative diseases, bacterial pathogenesis, and enzyme specificity engineering.

Mikołaj Dziurzyńskiمشاهده پروفایل

پژوهشگر

• Systems Biology
• Microbial Interactions
• Metabolic Engineering
• +۵ مورد دیگر

Dr. Mikołaj Dziurzyński is a researcher at the University of Warsaw, specializing in systems biology and microbial interactions. His work focuses on optimizing microbial cultivation methods, enhancing compound production through metabolic modeling, and studying fungal-bacterial symbiosis. He leads the NCN WEAVE-UNISONO 2024 project exploring functional diversity in Mortierellaceae fungi and collaborates on projects like FunDive for fungal biodiversity monitoring. His research spans Arctic microbiology, antibiotic resistance mechanisms, and biocontrol strategies for plant pathogens. Key projects include: NCN WEAVE-UNISONO 2024/06/Y/NZ8/00013 (Project Head) FunDive – Biodiversa+ BiodivMon (Co-Investigator) ALTF 565-2021: Fungi-bacteria symbiosis modeling His research interests integrate computational biology with experimental approaches, addressing challenges in environmental microbiology, biotechnology, and clinical diagnostics. Notable contributions include the LCPDb-MET database for metal resistance gene detection and the Prototheca-ID web application for algal pathogen identification. Dr. Dziurzyński’s publications highlight his expertise in permafrost microbiota analysis, Mycobacterium tuberculosis drug resistance, and fecal microbiota transplantation assessments. He actively engages in international collaborations, bridging ecological, computational, and applied microbiology domains.

Peter Braggeمشاهده پروفایل

استاد پژوهشی

• Evidence-Based Policy
• Health
• Sustainability
• +۳ مورد دیگر

Professor Peter Bragge is a Research Professor at Monash University, affiliated with the Monash Sustainable Development Institute (MSDI) and BehaviourWorks Australia. He leads the Evidence Review Service (ERS), which provides evidence syntheses for government and industry clients, and collaborates with McMaster University to build the Social Systems Evidence (SSE) database for Sustainable Development Goals (SDGs). His work focuses on evidence-based policy, health systems, and sustainable development. Education: B.Physio (Hons.) from the University of Melbourne (1995) and Licentiate in Piano Performance from Trinity College London (1991). Research interests include evidence synthesis methods, traumatic brain injury (TBI) classification, climate change adaptation in healthcare, and behavior change strategies. Over 90 peer-reviewed publications span journals like The Lancet Neurology and Implementation Science. Notable outputs include the 2025 NIH-NINDS TBI classification framework and the 2018 book on Victoria's trauma system. Current projects include SDG evidence mapping, health workforce burnout reduction, and policy reviews for mental health systems. Collaborations involve institutions like the Australian Commission on Safety and Quality in Health Care. Advocacy and grants: Over 30 active and completed projects funded by government and NGOs, focusing on evidence translation and policy impact. Media engagements include The Conversation and ABC News.

• RNA Biology
• Small RNA
• C. elegans
• +۳ مورد دیگر

Peter Boag is an Associate Professor at Monash University's Department of Biochemistry & Molecular Biology, affiliated with the Monash Biomedicine Discovery Institute. His research focuses on RNA biology, small RNA pathways, and gene regulation in the model organism Caenorhabditis elegans , with applications in biomedical discovery and parasitology. Key research areas: RNA-protein interactions, germ cell development, and anthelmintic drug discovery. External affiliation: Adjunct role at the University of Melbourne. Research Trends : The latest publications highlight genomic integrity in C. elegans (2024), miRNA pathways (2024), anthelmintic screening methodologies (2022-2021), translational regulation mechanisms (2020), and epigenetic inheritance studies (2018). Articles consistently emphasize the role of RNA biology in developmental processes and biomedical applications. Projects : Current initiatives include Biomolecular Condensates in mRNA Regulation (2024-2027) and collaborations on food-borne parasite interventions. Past projects explored RIO kinases (2013-2015) and RNA salon platforms (2017).

Gavin Knottمشاهده پروفایل

دانشیار

• RNA Biology
• CRISPR-Cas Systems
• Structural Biology
• +۵ مورد دیگر

Gavin Knott is an Associate Professor in the Department of Biochemistry and Molecular Biology at Monash University, leading the Knott Lab within the Biomedicine Discovery Institute. His research focuses on RNA biology, CRISPR-Cas systems, and nucleic acid modification machinery. He obtained his Ph.D. from the University of Western Australia, followed by postdoctoral work at the University of California, Berkeley under Nobel laureate Jennifer Doudna. His lab employs multidisciplinary approaches spanning computational biology, biochemistry, and structural biology to develop next-generation biotech tools for diagnostics and therapeutics. Education: Ph.D. in Biochemistry (University of Western Australia, 2016) External Positions: Postdoctoral Fellow at UC Berkeley (2016–2021) Research interests include understanding RNA-binding proteins, CRISPR immune systems in microbes, and structural biology of nucleic acid-modifying enzymes. Key projects include developing CRISPR-based diagnostic tools (e.g., Cas13a for SARS-CoV-2 detection) and creating novel RNA manufacturing enzymes. Knott has secured grants like the NHMRC Investigator Grant (2020) and awards including the ASBMB Boomerang Award (2019). Recent articles highlight advancements in cryo-EM techniques, CRISPR enzyme classification (CasPEDIA database), and structural insights into CRISPR-Cas9 mechanisms. His team collaborates on initiatives like the Victorian Pre-clinical mRNA Innovation Incubator (VPMII), advancing RNA therapeutics. Scientific Awards: Sir Keith Murdoch Fellowship (2018) NHMRC Investigator Grant (2020) ASBMB Boomerang Award (2019) Lorne Protein Anders Young Investigator Award (2019) Knott actively contributes to academic activities, including organizing the CRISPR Conference 2025 and serving as a Guest Editor for Methods . His lab’s work aligns with UN Sustainable Development Goals related to health and innovation.