جست‌وجوی استاد و پژوهشگر

Isaac Cannمشاهده پروفایل

استاد

• Archaeal Biology
• Microbial Physiology
• Microbiome and Microbial Communities
• +۷ مورد دیگر

Isaac Cann is a Professor of Animal Sciences and Affiliate Professor of Microbiology at the University of Illinois at Urbana-Champaign (UIUC). He leads research in archaeal DNA replication, host-microbiome interactions, and enzymes for biofuel production. His work is affiliated with the Carl R. Woese Institute for Genomic Biology (IGB), focusing on Microbiome Metabolic Engineering and Biocomplexity themes. Education : B.Sc. (Hons) in Animal Sciences (University of Ghana, 1986), M.S. and Ph.D. in Rumen Microbiology (Mie University, Japan, 1991–1994), Postdoctoral studies at UIUC (1994–1997). Affiliations : Professorships in Nutritional Sciences, Carl R. Woese Institute for Genomic Biology, and Center for East Asian and Pacific Studies. His research explores microbial enzymes for biofuel production, gut microbiota’s role in fiber digestion and health, and archaeal DNA replication mechanisms. Key contributions include identifying enzymes for plant cell wall degradation and understanding microbiota-derived metabolites’ impacts on human health. Awards include the NSF CAREER Award (2003), UIUC Excellence in Guiding Undergraduate Research (2012), and the Paul A. Funk Award (2014). His lab collaborates across disciplines to advance sustainable energy and microbial systems research.

• Cell Biology
• Neurobiology
• Biophysics
• +۳ مورد دیگر

Aleksandra Arning is a Researcher and Teacher at the Department of Biodynamics and Biocomplexity within the Faculty of Science at Utrecht University. Her work focuses on interdisciplinary biological research at the intersection of cell biology, neurobiology, biophysics, and biocomplexity.

Sibbe Bakkerمشاهده پروفایل

پژوهشگر

• Bioinformatics
• Applied Data Science
• Integrative Bioinformatics
• +۴ مورد دیگر

Sibbe Bakker is a Researcher and Teacher in the Department of Biology at Utrecht University, Faculty of Science, within the Biodynamics and Biocomplexity research group, specializing in Bioinformatics. His research focuses on Applied Data Science , Integrative Bioinformatics , and Life Sciences , with strong expertise in the R programming language for data analysis in biological contexts. He is actively involved in promoting bioinformatics education and tools, notably through organizing a bioinformatics interest group at the University of Zambia to advance the use of R in research and education. He works five days a week and is based at the Kruyt building on Tuesdays through Fridays.

• Bioinformatics
• Genomics
• Epigenetics
• +۱۲ مورد دیگر

Vivek Bhardwaj is an Assistant Professor at the Institute of Biodynamics and Biocomplexity, Department of Biology, Utrecht University. He leads the Quantitative Biology and Data Integration research group, focusing on combining high-throughput genomics and machine learning to understand and manipulate cell fate decisions. Research Interests: His work lies at the intersection of bioinformatics, genomics, and developmental biology. The lab investigates how epigenetic landscapes and transcription factors guide cell identity during animal development. Using single-cell and single-molecule genomics technologies, they generate large-scale datasets to build statistical and machine learning models that explain cellular decision-making processes. Research Approach: The lab employs a dual strategy: (1) extracting biological insights from multi-omics data of developing cells to model cell identity and function, and (2) developing open-source bioinformatics tools and workflows for analyzing single-cell (epi)genomics data. Their long-term goal is to enable in-vivo reprogramming of stem cells for applications in regenerative medicine, healthy aging, and cancer therapy. Publications Trend: Recent research, such as the 2025 preprint on zebrafish embryos, demonstrates a strong focus on single-cell multiomics, integrating histone modification and gene expression data to dissect developmental mechanisms. The work emphasizes quantitative modeling, data integration, and tool development for the broader biological community. No scientific awards listed in the provided text. Advising and Grants: While specific students and grant details are not mentioned, the lab actively hosts interns and new members, indicating a commitment to training and mentorship. The development of multiple open-source software tools suggests involvement in collaborative and computationally driven research projects, likely supported by external funding. Labs and Teams: The Bhardwaj Lab is an inter-divisional group within Utrecht University. They maintain a strong open-science ethos, with tools like sincei, scChICflow, and snakepit publicly available on GitHub. The lab also shares protocols, datasets, and news about open positions, reflecting an integrated and transparent research environment.

• Cell Biology
• Neurobiology
• Biophysics
• +۲ مورد دیگر

Jelle van den Bor serves as a Researcher within the Department of Biology at Utrecht University's Faculty of Science, specializing in the Cell Biology, Neurobiology and Biophysics research group under the Biodynamics and Biocomplexity theme. His research spans interdisciplinary fields including: Cellular dynamics and molecular mechanisms Neural system modeling Physical principles in biological processes Complex systems analysis in living organisms Dr. van den Bor contributes to advancing fundamental understanding of biological complexity through quantitative and systems-level approaches, focusing on emergent properties in cellular and neural networks.

Benjamin Bouchetمشاهده پروفایل

پژوهشگر

• Cell Biology
• Microtubule Dynamics
• Cytoskeleton Regulation
• +۵ مورد دیگر

Dr. Benjamin Bouchet is a Researcher in the Department of Cell Biology, Neurobiology and Biophysics at the Faculty of Science, Utrecht University. His work is centered on the molecular mechanisms of cell motility, cytoskeletal dynamics, and their implications in cancer and developmental biology. Research Interests: His primary research areas include microtubule dynamics , cell migration , cytoskeleton organization , and cancer cell invasion . He investigates how microtubules are regulated at focal adhesions and the Golgi apparatus, and how these processes influence 3D cell motility and mesenchymal invasion. His work bridges fundamental cell biology with applications in cancer and neurobiology. Publication Trends: His recent publications show a consistent focus on microtubule regulation, with key contributions on proteins such as KIF21A, SLAIN2, CLASP1, and Talin-KANK1. The research spans models from human cancer cells to C. elegans and Arabidopsis , indicating a broad yet integrated approach to understanding conserved cellular mechanisms. Collaborations and Output: He is a frequent collaborator with Prof. Anna Akhmanova and has published in high-impact journals such as Developmental Cell , Journal of Cell Science , and Nature Communications . His work includes articles, reviews, and conference posters, reflecting active engagement in both research and scientific discourse. Advising and Grants: While no formal advisees or grants are listed in the provided data, his role as a researcher suggests involvement in mentoring and project leadership within his research group. Labs and Teams: He is part of the Biodynamics and Biocomplexity research group at Utrecht University, which focuses on quantitative and mechanistic studies of cellular processes.

Luca Braccioliمشاهده پروفایل

استادیار

• Developmental Biology
• Gene Regulation
• Stem Cell Biology
• +۷ مورد دیگر

Dr. Luca Braccioli is an Assistant Professor in the Department of Biology at Utrecht University, Faculty of Science, where he leads the Braccioli Lab within the Biodynamics and Biocomplexity division. His research focuses on developmental biology, particularly gene regulation and inter-tissue communication during mammalian embryonic development using stem cell-based embryo models such as gastruloids. His research interests lie at the intersection of genomics, stem cell biology, and embryology. He investigates how transcription factors regulate cell fate decisions and tissue-tissue interactions during early organogenesis. Using single-cell genomics (e.g., scATAC-seq), advanced microscopy, and chimeric gastruloid systems, his lab dissects the gene regulatory networks that drive inter-tissue communication. This work aims to uncover mechanisms essential for in vitro organ generation and regenerative medicine applications. The recent publications from Dr. Braccioli’s lab highlight a strong focus on gene regulation, chromatin dynamics, and transcriptional control during development. Key themes include the role of transcription factors like MSGN1 and ZNF143, the function of cohesin and CTCF in genome architecture, and the use of innovative gastruloid models to study cross-lineage dependencies. These works reflect a multidisciplinary approach combining molecular biology, bioinformatics, and developmental modeling. Dr. Braccioli actively supervises a team of researchers, including PhD, MSc, and BSc students, indicating a strong commitment to academic mentoring. While no formal grants are listed in the provided text, his publication record in high-impact journals suggests active funding and collaborative research. He works closely with other principal investigators, such as Dr. Elzo de Wit, on chromatin and gene regulation projects. The Braccioli Lab is based in Room O.505 of the Hugo R. Kruyt Building at Utrecht University and is part of a vibrant developmental biology research group. The lab utilizes scalable, genetically tractable gastruloid models to overcome limitations of in utero embryo studies, enabling precise manipulation and real-time tracking of developmental processes.

Richard Cardoso Da Silvaمشاهده پروفایل

پژوهشگر

• Genome Biology
• Epigenetics
• DNA Damage Response
• +۷ مورد دیگر

Dr. Richard Cardoso Da Silva is a Researcher in the Department of Genome Biology and Epigenetics at the Faculty of Science, Utrecht University. His work is embedded within the Biodynamics and Biocomplexity research theme, focusing on molecular mechanisms underlying genome regulation and cellular stress responses. His research interests span genome biology , epigenetics , DNA damage response , translational control via GCN2 signaling , and actin cytoskeleton dynamics . He utilizes model systems such as budding yeast and mammalian cells to investigate how cellular stresses regulate protein synthesis and genome integrity. His recent publications (2020–2024) highlight a consistent focus on stress-responsive pathways, chromatin dynamics, and meiotic regulation. Key themes include the role of GCN2 in antiviral defense, DNA damage factor recruitment, and the interplay between cytoskeletal organization and translational control. His methodological contributions include optimized protein extraction and mutagenesis techniques. Dr. da Silva contributes to academic teaching, notably in the course Genomes, Cells & Tissues . While no formal awards or advising roles are listed, his active publication record in high-impact journals such as Nature Communications , PLoS Genetics , and Journal of Molecular Biology underscores his ongoing scientific contributions. He collaborates extensively, particularly with researchers like E. Sattlegger and B. Castilho.

Christopher L. Barrettمشاهده پروفایل

استاد

• Biocomplexity
• Computational Science
• Dynamical Networks
• +۷ مورد دیگر

Christopher L. Barrett is the Executive Director of the Biocomplexity Institute and Distinguished Professor of Computer Science at the University of Virginia. He holds a joint appointment in the School of Engineering and Applied Science. His interdisciplinary work spans computational science, dynamical networks, and AI-driven modeling. He leads large-scale research initiatives for federal agencies and has advised organizations like the Department of Defense and the European Commission. Education: Ph.D. in Bioinformation Systems (Caltech, 1985), Post-Ph.D. in Aerospace Experimental Psychology (U.S. Navy, 1986) Awards: 2021 Virginia Academy of Science Award, Jubilee Professorship (Chalmers University, 2012–2013), Distinguished International Professor (Royal Institute of Technology, 1997–1998) Research focuses on multi-scale systems, including RNA evolution, pandemic modeling, and sociotechnical infrastructure resilience. His work bridges computational methods with real-world problems like disaster preparedness and vaccine distribution strategies. He has published over 100 articles and holds seven patents. Recent publications emphasize agent-based frameworks for migration modeling, genomic surveillance, and HPC-driven epidemic analysis. His interdisciplinary approach unifies mathematical, biological, and social science methods to address complex global challenges.

• Machine Learning
• Big Data
• Artificial Intelligence in Biomedicine
• +۳ مورد دیگر

Gastone Castellani is a Full Professor of Applied Physics and Biophysics at the University of Bologna's Department of Medical and Surgical Sciences. He holds a PhD in Physics and directs the Galvani Center for Bioinformatics, Biophysics, and Biocomplexity. His research focuses on Machine Learning, Big Data, and AI applied to biomedical data, with a particular interest in statistical interpretation of AI methods. Education: Graduate in Biology and Physics PhD in Physics Research Collaborations: Associate Professor (Research) at Brown University (since 2000), collaborating with Prof. Leon N Cooper on neural networks and gene expression analysis. Active in EU projects: GenoMed4All, SYNTHEMA, METASTRA, SYNTHIA. Awards and Recognition: Chaos and Complexity Prize (1993) Vice President Award, Brown University (2003) Grants and Projects: Lead researcher on the SYSAGEOMICS project (Brazilian visitor grant, 2025) and a Brown University grant for collaboration with Brazilian universities on circulating nucleic acids. Labs/Teams: Director of the Galvani Center, involved in interdisciplinary teams integrating computational and experimental methods for aging and age-related diseases.

Terry C. Hazenمشاهده پروفایل

استاد

• Microbial Ecology
• Environmental Engineering
• Bioremediation
• +۱۲ مورد دیگر

Dr. Terry C. Hazen is the UT/ORNL Governor's Chair Professor in the Department of Civil & Environmental Engineering at the University of Tennessee, Knoxville , with additional appointments in Microbiology, Earth and Planetary Sciences, Genome Science and Technology, and the Bredesen Center. He leads the Hazen Lab, a multidisciplinary research group focused on microbial ecology and environmental engineering. Education: Bachelor of Science (Biology), Michigan State University, 1973 Master of Science (Biology, Parasitology), Michigan State University, 1974 Ph.D. (Parasitology-Ecology, Microbiology-Immunology), Wake Forest University, 1978 His research centers on microbial ecology , particularly in the context of bioremediation , biofuels , enhanced oil recovery , and water quality . He investigates systems biology and environmental stress responses from the molecular to ecosystem level. His recent work explores groundwater microbial communities , nitrous oxide emissions , denitrification , and microbial genomics for nuclear nonproliferation monitoring . The most recent publications highlight advanced work in reactive transport modeling , microbial community assembly , enrichment cultures , and dissolved organic matter analysis using machine learning. These studies are largely conducted at the ENIGMA Field Research Center at Oak Ridge, focusing on contaminated subsurface environments. Scientific Awards and Recognition: ASM Award for Environmental Research (2021) UT/ORNL Governor's Chair Professor Seaborg Fellow Chancellor’s Fellowship (advised student) NSF Fellowship (advised postdoc) Dr. Hazen has advised numerous Ph.D. and M.S. students and mentored many postdoctoral fellows and research associates. His lab has received significant recognition, with several members listed among the Stanford World’s Top 2% Cited Scientists . He has been actively involved in national and international responses to oil spills , including the Deepwater Horizon and Peru Repsol incidents. His lab holds multiple patents in bioremediation technologies and maintains strong collaborations with Oak Ridge National Laboratory . Laboratories and Facilities: The Hazen Lab operates at both the University of Tennessee (SERF and Tickle Engineering Building) and Oak Ridge National Laboratory (JIBS), utilizing state-of-the-art equipment for microbial and environmental research.

• Developmental Biology
• Cell Polarity
• Systems Biology
• +۳ مورد دیگر

Professor Mike Boxem is a faculty member in the Department of Biology at Utrecht University's Faculty of Science, specializing in Developmental Biology within the Biodynamics and Biocomplexity research group. His research focuses on cell polarization mechanisms using C. elegans as a model organism, with particular interest in understanding the network of functional interactions between polarity regulators, the consequences of loss of polarity to cell behavior and fate, and connections between cortical polarity and other cellular processes. His laboratory is located in the Hugo R. Kruyt Building at Padualaan 8, Room O508, Utrecht. Boxem's research employs systems biology approaches, systematic experimental manipulation, and live-cell imaging to investigate cell polarity, which is critical for animal development and tissue functioning. His work has significant implications for understanding diseases like cancer where polarity defects play a key role. The research primarily utilizes C. elegans to study epithelial tissues and the complex network of protein interactions at the cell surface that maintain polarity. His group has made substantial contributions to understanding protein phosphorylation, lumen formation, polarity complexes, and protein-protein interactions in developmental contexts. His publication record demonstrates a consistent trajectory from early work on cell cycle regulation in C. elegans to more recent sophisticated investigations of molecular mechanisms governing epithelial cell polarization. The research spans molecular, cellular, and developmental biology, with applications to understanding fundamental biological processes and disease mechanisms. His work shows increasing sophistication in methodology, incorporating advanced imaging, genetic manipulation, and systems-level analysis. NWO Vici Award (2016) ECHO grant (July 14, 2014) Professor Boxem serves as an associate editor for Genetics (a publication of the Genetics Society of America) and actively participates in reviewing articles and grants, serving on grant review committees, and participating in doctoral and dissertation review committees. He also contributes to the organization of scientific conferences in his field, helping to advance the broader research community in developmental and cell biology. His laboratory at Utrecht University maintains a strong focus on cell polarity research using C. elegans as a model system, with particular emphasis on understanding the molecular mechanisms that govern epithelial cell polarization and its role in development and disease. The research group combines molecular, cellular, and systems-level approaches to unravel the complex network of interactions that govern cell polarization in developing organisms.

• Fluid Dynamics
• Turbulent Convection
• Pattern Formation
• +۲ مورد دیگر

Dr. Mohammad Shah Emran is a Scientist affiliated with the Laboratory for Fluid Physics, Pattern Formation and Biocomplexity at the Max Planck Institute for Dynamics and Self-Organization in Göttingen, Germany. His research focuses on the theoretical analysis of turbulent convection, fluid dynamics, and the emergence of complex patterns in physical and biological systems. Research Areas: Fluid Dynamics, Turbulent Convection, Pattern Formation, Biocomplexity, Theoretical Physics

Shoba Kapoorمشاهده پروفایل

پژوهشگر

• Neurobiology
• Fluid Dynamics
• Developmental Biology
• +۴ مورد دیگر

Dr. Shoba Kapoor is a Group Leader and Scientist at the Laboratory for Fluid Physics, Pattern Formation and Biocomplexity (LFPB) at the Max Planck Institute for Dynamics and Self-Organization. She holds a Ph.D. from Georg-August University in Göttingen (2019) and an M.Sc. in Developmental, Neural, and Behavioral Biology from the same institution (2014). Key Research Focus: Cilia-driven cerebrospinal fluid (CSF) dynamics in mammalian brain ventricles. Collaborations: Works with Dr. Stefano Villa’s group on quantitative image analysis and Dr. Christian Westendorf on polarity algorithms. Techniques: Utilizes immunostaining, confocal microscopy, STED microscopy, and in vitro systems to study flow patterns and cell polarity. Publications highlight her interdisciplinary approach blending Neurobiology , Fluid Dynamics , and Developmental Biology . Her work on 3D extrusion bioprinting of engineered human myocardium involves collaboration with the University Medical Center Göttingen and MPI for Biophysical Chemistry. Education: B.Sc. in Biology, Georg-August University, Göttingen M.Sc. in Developmental, Neural, and Behavioral Biology, Georg-August University, Göttingen Ph.D., Georg-August University, Göttingen (2019)

• Soft Condensed Matter
• Experimental Biophysics
• Origin of Life
• +۴ مورد دیگر

Dr. Vahid Nasirimarekani is a group leader at the Laboratory for Fluid Physics, Pattern Formation and Biocomplexity (LFPB) within the Max Planck Institute for Dynamics and Self-Organization. He focuses on experimental studies of soft condensed matter , self-organization in biological systems , and the physical principles underlying the origin of life .