معرفی
Can Firtina is a Lecturer at ETH Zurich's Department of Information Technology and Electrical Engineering and a Senior Researcher in the SAFARI Research Group. His research focuses on accelerating genome analysis through algorithm-architecture co-design, particularly leveraging hardware-software integration for bioinformatics workloads. He holds a PhD in Electrical and Computer Engineering from ETH Zurich and degrees from Bilkent University. As of Fall 2025, he will join the University of Maryland, College Park (UMD) as an Assistant Professor of Computer Science.
Education:
- PhD in Electrical and Computer Engineering (D-ITET), ETH Zurich
- MSc in Computer Engineering, Bilkent University
- BSc in Computer Engineering, Bilkent University
Research Interests:
His work bridges bioinformatics and computer architecture, emphasizing real-time, accurate, and energy-efficient genome analysis. Key areas include raw nanopore signal processing (e.g., RawHash, Rawsamble), hardware-software co-design for bioinformatics, and scalable metagenomic analysis. His algorithms address noise mitigation and accelerate applications like assembly polishing (Apollo) and alignment remapping (AirLift).
Labs & Collaborations:
He leads research within the SAFARI Group, collaborating with institutions like NVIDIA, AMD, and Huawei. His contributions span tools like GenASM (approximate string matching) and BLEND (fuzzy seed matching). He also organizes workshops on bioinformatics acceleration and serves on review boards for venues like ISMB and RECOMB.
Future Directions:
Future work includes end-to-end raw signal analysis without basecalling, reference-free genome assembly, and leveraging emerging hardware for real-time field applications. He will expand these efforts at UMD, hiring students in Fall 2025.
