Find Academic Supervisors

Stephanie HicksView profile

Associate Professor

• Single-cell genomics
• Spatial transcriptomics
• Computational methods development
• +3 more

Dr. Stephanie Hicks is an Associate Professor in Biomedical Engineering and Biostatistics at Johns Hopkins University, with affiliations in multiple centers including the Malone Center for Engineering in Healthcare and the Center for Computational Biology. Her research focuses on developing computational methods and open-source software for analyzing single-cell and spatial transcriptomics data to enhance understanding of human health and disease. She holds a PhD from Rice University and completed postdoctoral training at Dana-Farber Cancer Institute and Harvard. Education: B.S. Mathematics (LSU), M.A./Ph.D. Statistics (Rice University), Postdoc in Biostatistics/Data Science (Dana-Farber/Harvard). Research interests span scalable computational methods, machine learning, and biomedical data science. Notable contributions include tools like SpotSweeper for spatial transcriptomics quality control and the spatialLIBD package for spatial data visualization. Awards include Fellow of the American Statistical Association, COPSS Emerging Leader Award, and Myrto Lefkopoulou Lectureship. She co-hosts the Corresponding Author podcast and actively promotes open science through initiatives like R-Ladies Baltimore. Labs/Teams: Leads the Hicks Lab, collaborates across departments at Johns Hopkins, and engages in interdisciplinary projects in spatial genomics and computational biology.

• Immunology
• Microbiology
• Adult Stem & Progenitor Cell Therapy
• +3 more

Cynthia R. Gregory, Ph.D., is a Research Associate Professor at the OHSU Center for Regenerative Medicine and the Portland Veterans Affairs Medical Center. Her research focuses on leveraging adult stem/progenitor cells to modulate inflammation, immunity, and tissue regeneration. She pioneered studies demonstrating endothelial cells as active targets in immune responses, particularly allograft rejection and autoimmune diseases like experimental allergic encephalomyelitis. Dr. Gregory holds a Ph.D. in Microbiology and Immunology from OHSU (1987) and completed a postdoctoral fellowship in Cardiovascular Medicine at OHSU, specializing in cardiac graft rejection mechanisms. Her current projects include using autologous bone marrow cells for muscle/nerve regeneration post-compartment syndrome, cardiac stem cells for heart failure treatment, and mesenchymal stromal cells for acute respiratory distress syndrome. Her research spans immunology, stem cell biology, and translational medicine. Recent publications highlight applications of deep learning in pneumonia diagnostics (2024), ultrasound monitoring in transplant patients (2022), and novel therapies for spinal cord injury (2019) and burn wound healing (2017). Her work integrates clinical translation with basic science, addressing critical gaps in regenerative and immunomodulatory therapies. Collaborative projects with the Portland VA Medical Center and OHSU’s Center for Regenerative Medicine underscore her commitment to multidisciplinary research. Her innovations include rapid stem cell assay methods (2015) and Schwann cell-based nerve repair strategies (2012).

Susan MatuleviciusView profile

Professor

• Cardiac Imaging
• Cardiovascular Disease
• Women's Heart Health
• +5 more

Susan Matulevicius, M.D., M.S.C.S., is a Professor in the Department of Internal Medicine at UT Southwestern Medical Center and a member of its Division of Cardiology. She specializes in noninvasive cardiac imaging (echocardiography, MRI), women’s heart health, and cardiovascular disease prevention. She also serves as Associate Dean of Faculty Wellness, mentoring cardiology trainees and collaborating on research in cardiac MRI. Her research focuses on pregnancy-related cardiac changes, chronic heart failure, and optimizing diagnostic testing in clinical care. Dr. Matulevicius earned a B.S.E. (magna cum laude) in biomedical engineering from Duke University and an M.D. from the University of Pennsylvania School of Medicine, where she joined Alpha Omega Alpha. She completed residency at the Hospital of the University of Pennsylvania and fellowships in cardiology and advanced cardiac imaging at Parkland Health & Hospital System. Her awards include the 2013 Jeremiah Stamler Distinguished Young Investigator Award and recognition as a 2018 Texas Monthly 'Super Doctor.' She is a Fellow of the American College of Cardiology and active in the Society of Cardiovascular Magnetic Resonance. Dr. Matulevicius has reviewed for journals like Journal of Investigative Medicine and International Journal of Cardiovascular Imaging , and contributed to over 28 peer-reviewed publications. She advocates for high-value care through initiatives like the Costs of Care competition and focuses on improving faculty well-being through her administrative roles.

Martin BastmeyerView profile

Professor

• Cell Biology
• Neurobiology
• Biophotonics
• +4 more

Prof. Dr. Martin Bastmeyer is a Full Professor and Head of the Department for Cell- and Neurobiology at the Karlsruhe Institute of Technology (KIT). He holds leadership roles including former Dean of the Faculty for Chemistry and Biosciences at KIT and spokesperson for the Helmholtz Society's BioInterfaces Programme. His research focuses on cell-neurobiology, mechanobiology, and advanced biomaterials, particularly 3D microscaffolds for cell studies. Education: Diploma in Biology (1984), PhD in Cell Biology (1989), Habilitation in Cell- and Neurobiology (1996) Research interests include cell-matrix interactions, stem cell engineering, and biophotonics applications. He pioneered studies on neural adhesion molecules and 3D-printed biomaterials for tissue engineering. Key achievements include developing mechano-responsive hydrogels and elucidating molecular mechanisms in cardiac maturation. Awards include the Erwin-Schrödinger-Prize (2016) for interdisciplinary research. His work bridges material science and biology through innovative microfabrication techniques and functional cell niches. Awards: BRIDGE Fellowship (2018), Heisenberg Fellowship (1998–2001) Prof. Bastmeyer leads interdisciplinary teams in KIT's BioInterfaces and Karlsruhe School of Optics & Photonics (KSOP), advancing biofunctional materials and cell-mechanics research. His labs utilize cutting-edge imaging and microengineering to study cellular responses to mechanical cues and environmental stimuli.

• Biomedical Engineering
• Biomedical Signal Processing
• Entropy Analysis
• +7 more

Georgios Manis is an Associate Professor in the Department of Computer Science and Engineering at the School of Engineering, University of Ioannina, Greece. He holds a PhD from the National Technical University of Athens and has been a faculty member at the University of Ioannina since 2002, progressing from Lecturer to Associate Professor in 2018. He has also served as temporary teaching staff at the University of Patras, University of Crete, and University of Ioannina in the late 1990s and early 2000s. Education: B.Sc. in Computer Engineering (Diploma), National Technical University of Athens (NTUA), 1987–1992 MSc in Advanced Methods in Computer Science (Distributed and Parallel Systems), Queen Mary, University of London, 1992–1993 PhD in Computer Engineering, NTUA, School of Electrical and Computer Engineering, 1993–1997 His research interests lie at the intersection of Biomedical Engineering and Computing Systems , with a strong emphasis on Biomedical Signal Processing , Entropy Analysis , and Machine Learning . He has pioneered work in Bubble Entropy —a parameter-free entropy measure—and developed fast algorithms for entropy computation. His work also extends to compiler design and parallel computing, particularly in the automatic parallelization of recursive functions and loops. The trends in his recent publications reflect a dual focus: (1) biomedical applications involving entropy, heart rate analysis, and disease diagnosis using machine learning (especially Random Forests and SVMs), and (2) high-performance computing, including parallelization techniques and compiler optimizations for multi-core and SVP architectures. His research is highly interdisciplinary, combining signal processing, algorithm design, and clinical applications. Scientific Leadership and Recognition: Guest Editor, Special Issue on “Entropy in Biomedical Engineering”, Entropy (MDPI) Member of the IPAN Laboratory, University of Ioannina Active contributor to IEEE, Elsevier, and MDPI journals He has supervised several graduate students and is involved in funded research projects such as Palimpsest and Homore , focusing on smart systems for cultural interaction and elderly monitoring. His advising contributions are evident in co-authored papers with students like Evanthia Tripoliti and Aristeidis Mastoras. He teaches both undergraduate and postgraduate courses, including Compilers I/II and Biomedical Data Analysis . Laboratories and Teams: He is a member of the IPAN lab at the University of Ioannina, which supports interdisciplinary research in informatics and biomedical applications. His collaborative network includes researchers from Greece and abroad, particularly in the fields of biomedical signal analysis and entropy-based methods.

Charlie ScarffView profile

Academic

• Integrative Structural Biology
• Cryo-electron Microscopy
• Mass Spectrometry
• +14 more

Dr Charlie Scarff is a British Heart Foundation Jacqueline Murray Coomber Fellow and University Academic Fellow in Structural Biology at the University of Leeds, affiliated with the Leeds Institute of Cardiovascular and Metabolic Medicine (LICAMM) within the School of Medicine. He is based at the LIGHT Laboratories and is an active member of the Astbury Centre for Structural Molecular Biology. His research focuses on the structure and function of myosin motors and muscle in health and disease, particularly in inherited heart conditions like hypertrophic and dilated cardiomyopathy. Utilizing an integrative structural biology approach, his lab combines cryo-electron microscopy/tomography (cryoEM/ET) , mass spectrometry , mutational analyses, functional assays, and modeling to uncover molecular mechanisms. Dr Scarff’s recent work has made significant strides in visualizing the swinging lever mechanism of myosin using time-resolved cryoEM and elucidating the mechanism of mavacamten inhibition , a promising therapeutic for cardiomyopathy. His publications in high-impact journals reflect a strong trend in advancing structural methodologies to understand myosin dynamics and disease modulation. British Heart Foundation Jacqueline Murray Coomber Fellow He actively supervises PhD students and collaborates with leading researchers such as Prof. Muench and Prof. White. His lab is currently recruiting for several PhD projects focusing on cardiac myosin modulators, smooth muscle contraction, and in situ structural biology, indicating ongoing grant funding and research momentum. Dr Scarff is also involved in organizing scientific meetings, such as the Astbury Centre’s innovation event at the Royal Society, promoting translational drug discovery. His work is conducted within the Astbury Centre and LICAMM, leveraging state-of-the-art facilities for structural and cardiovascular research.

Oliver WiebenView profile

Professor

• MRI Methodology
• Cardiovascular Imaging
• Cerebrovascular Imaging
• +7 more

Oliver Wieben is a Professor in the Departments of Medical Physics and Radiology at the University of Wisconsin-Madison. He serves as Vice Chair for Research and Co-Director of the International Center for Accelerated Medical Imaging (2013-2019). B.S., Electrical Engineering, Leibniz Universität Hannover Dipl.-Ing., Electrical Engineering, Karlsruhe Institute of Technology Ph.D., Electrical Engineering, University of Wisconsin-Madison His research focuses on MRI methodology development , particularly in cardio/cerebrovascular imaging , 4D Flow MRI , and placental oxygenation assessment . He has pioneered techniques for real-time imaging , velocity-sensitive MRI , and motion correction schemes in MR imaging. His recent publications (2022-2025) demonstrate expertise in computational fluid dynamics , automated post-processing , and exercise MRI . Notable collaborations include work on Zika virus effects in placenta and 4D Flow applications in Alzheimer's research . Scientific Achievements: Distinguished Investigator Award (2022) Fellow of SCMR (2018) Lauterbur Award for Best MRI Presentation (2009) ISMRM Outstanding Teacher Awards (2014) Multiple patents in MRI reconstruction techniques He has led international workshops on 4D Flow MRI , served on peer review panels for the American Heart Association , and contributed to 4D Flow consensus guidelines . His work bridges technical MRI innovation with clinical translational research in cardiology, pulmonology, and maternal-fetal medicine.

• Magnetic Resonance Imaging
• Positron Emission Tomography
• Medical Imaging
• +5 more

Ronald Borra is a researcher affiliated with the Faculty of Medical Sciences at the University of Groningen , specializing in advanced imaging methodologies through the BRIDGE (Basic and Translational Research and Imaging Methodology Development in Groningen) group. His work integrates Magnetic Resonance Imaging (MRI) , Positron Emission Tomography (PET) , and Computed Tomography (CT) to study tissue mechanics, brain tumors, and cardiovascular function. Recent publications highlight his focus on MRI elastography for spinal and cardiac tissue analysis, diffusion-weighted imaging in glioma patients, and molecular imaging using [15O]H2O PET . Collaborative projects include automated quantification of brain volumes post-subarachnoid hemorrhage and the clinical application of multifrequency cardiac MRE. He contributed to the implementation of a Whole-Body PET/CT scanner at the UMCG in 2021, emphasizing technological advancements in diagnostic imaging. Research outputs demonstrate interdisciplinary applications spanning neurology , cardiology , and oncology , aligned with UN Sustainable Development Goals for healthcare innovation.

Elisabetta PeriView profile

Assistant Professor

• Biomedical Signal Processing
• Electrophysiological Signals
• Non-obtrusive Patient Monitoring
• +3 more

Elisabetta Peri is an Assistant Professor in the Signal Processing Systems group at the Eindhoven University of Technology (TU/e), affiliated with the Biomedical Diagnostics Lab and EAISI Health. Her research focuses on biomedical signal processing for non-obtrusive patient monitoring through electrophysiological signals and sweat sensing. M.Sc. in Biomedical Engineering (2013), Ph.D. in Bioengineering (2017) from Politecnico di Milano Her work spans biomedical signal processing , sweat sensing , sleep staging , and cardiovascular monitoring . She develops algorithms for non-invasive diagnostics in hemodialysis, diabetes, and sleep disorders. Key article trends include: Wearable device integration (2025) Sweat-based biomarker estimation (2024-2025) Transfer learning for sleep disorder detection (2025) Projects include: PISANO (Perioperative Innovations, Sleep Apnea, Newborn Monitoring) SEDAS (Sweat Sensing for Sepsis) PICASSO (Perinatal/Cardiovascular/Sleep Medtech)

• Polymorphism of drugs
• Drug-excipient interactions
• Oral controlled drug delivery matrices
• +3 more

Dr. Alessandra Rossi is an Assistant Professor at the Faculty of Pharmacy, University of Parma, specializing in drug delivery systems and pharmaceutical technology. Her research focuses on polymorphism of drugs, drug-excipient interactions, oral/nasal/pulmonary delivery systems, and nano/microparticle characterization. PhD in Pure and Applied Chemistry (University of Strathclyde, 1998) Erasmus/Socrates Research Fellowship (University of Gent, 1993-1994) Novartis Pharma AG Research Fellowship (Heriot-Watt University, 1998) Key research areas include: Development of oral hydrophilic matrices for controlled drug release Characterization of nasal and pulmonary delivery systems for targeted therapies Microencapsulation and agglomeration techniques for improved bioavailability Design of dry powder inhalers and heart-targeting nanoparticle systems Application of Quality by Design in pharmaceutical development Recent publications highlight her work in Acai oil-based organogels for topical cosmetics Microparticle systems for lung-targeted antioxidants Ligand-functionalized nanocarriers for liver cancer therapy Optimization of dry powder inhalation technologies Scientific awards and fellowships: Erasmus/Socrates Research Fellowship (1993-1994) Novartis Pharma AG Fellowship (1998)

• Critical Care Medicine
• Cardiovascular Physiology
• Systemic Inflammation
• +4 more

Lex van Loon serves as an Assistant Professor specializing in Cardiovascular and Respiratory Physiology. His research bridges clinical critical care and computational physiology, with active investigations into hemodynamic management, shock states, and physiological responses to environmental stressors. Research Focus: Dr. van Loon's work spans multiple domains of acute care medicine including: Pathophysiological mechanisms in septic and cardiogenic shock Computational modeling of cardiovascular adaptation (e.g., microgravity effects) Hemodynamic monitoring techniques and fluid responsiveness ICU environmental factors impacting patient outcomes Vasopressor pharmacology during systemic inflammation Publication Analysis: Recent works demonstrate consistent focus on translational physiology, combining clinical observations (fluid responsiveness, ICU noise) with advanced computational approaches (heart failure modeling, shock management systems). Methodologies range from meta-analyses to in vivo physiological studies.

• Circadian Rhythms
• Chronobiology
• Bioinformatics
• +12 more

Pal Westermark is a researcher and Head of the Department of Bioinformatics and Biomathematics at the Research Institute for Farm Animal Biology (FBN) in Dummerstorf, Germany, a position he has held since 2016. He leads the Chronobiology and Bioinformatics Working Group and has previously held research and leadership roles at the Institute of Theoretical Biology, Charité – Universitätsmedizin Berlin. Doctorate (2005): Models of the Metabolism of the Pancreatic β-Cell, KTH Stockholm, Sweden Master's Degree (1999): Molecular Biotechnology, Uppsala University, Sweden His research focuses on circadian rhythms in animals, regulation of gene expression and metabolic pathways, tissue homeostasis, biogerontology, and the application of time series analysis, control theory, and biostatistics to biological systems. He employs mathematical modeling and bioinformatics to understand the dynamics of biological clocks and their impact on metabolism and physiology. The trends in his recent publications reveal a strong focus on circadian biology, particularly in muscle and liver tissues, using transcriptomic, proteomic, and phosphoproteomic approaches. His work integrates computational modeling with experimental data to dissect the mechanisms of circadian regulation, including promoter architecture, rhythmic degradation, and the effects of exercise. He has also contributed methodological tools like the RAIN algorithm and Seagull for analyzing biological rhythms and high-dimensional data. While no specific scientific awards are mentioned in the provided text, his extensive publication record in high-impact journals such as PNAS , PLoS Genetics , and The Journal of Physiology underscores his significant contributions to the field. Dr. Westermark mentors researchers within his working group and leads a research team focused on chronobiology and bioinformatics. His work is supported by institutional funding, though specific grants are not listed. His research program combines theoretical and computational approaches to advance understanding of biological timing systems. He is actively involved in leading the Chronobiology and Bioinformatics Working Group at FBN, which conducts interdisciplinary research at the intersection of biology, mathematics, and computer science. The team develops and applies computational models and bioinformatics tools to study circadian rhythms and their implications for animal and human health.

• Pharmaceutical Chemistry
• Analytical Chemistry
• Microfluidics
• +6 more

Markus Haapala serves as a University Researcher at the Division of Pharmaceutical Chemistry and Technology within the Faculty of Pharmacy at the University of Helsinki. He acts as a supervisor for the Doctoral Programme in Materials Research and Nanosciences and leads research in microfluidics, 3D-printed organ-on-chip systems, and pharmaceutical analysis under the Chemical Microsystems Lab supervised by Tiina Sikanen. His research focuses on developing microfluidic platforms for drug metabolism studies, extracellular vesicle analysis, and toxicity screening. Key methodologies include mass spectrometry integration, 3D printing for microdevice fabrication, and organ-on-chip modeling of hepatocyte and cardiomyocyte functions. Recent work emphasizes cytochrome P450 activity monitoring and bacterial biofilm modeling using thiol-ene polymers. His 15 most recent publications (2023-2025) demonstrate strong concentration in microfluidic organ-on-chip applications, with recurring themes in extracellular vesicle quantitation, drug metabolite production, and biofilm formation. The work bridges pharmaceutical chemistry, microengineering, and toxicology, frequently utilizing 3D printing to replace traditional cleanroom fabrication. Award highlights include: Finnish Mass Spectrometry Society Prize for High-Level Doctoral Dissertation (2011) University of Helsinki Prize for High-Level Doctoral Dissertation (March 25, 2011) Haapala actively supervises doctoral candidates (Jéssica Amorim, Gowtham Sathyanarayanan) and master's students (Laura Sirviö), while participating in major research projects including PRINTOX (3D-printed organ-on-chip platforms) and EMiRa (enzyme microreactors for drug interaction studies). His work has attracted significant media coverage regarding 3D printing applications in chemical research. He operates within the Chemical Microsystems Lab, collaborating closely with Tiina Sikanen's team on microfluidic device development. Current efforts focus on scaling organ-on-chip platforms for high-throughput drug screening and integrating real-time metabolic activity monitoring.

Edwin MooreView profile

Professor

• Cardiac Physiology
• Excitation-Contraction Coupling
• Calcium Signaling
• +3 more

Dr. Edwin Moore is Professor and Head of the Department of Cellular and Physiological Sciences at the University of British Columbia Faculty of Medicine. His research focuses on excitation-contraction coupling mechanisms in cardiac and smooth muscle cells. B.Sc. and M.Sc. in Physiology from the University of Toronto Ph.D. in Pharmacology from the Mayo Clinic Research Interests: Dr. Moore's laboratory investigates the type-2 cardiac ryanodine receptor (RyR2) that regulate cardiac contractile force through calcium release dynamics. His team examines RyR2 position/function in normal and diseased tissue using: Transmission electron microscopy Electron tomography 3D superresolution immunofluorescence Transgenic mouse models Ca 2+ spark/transient analyses Biochemical approaches Scientific Collaborations: The lab collaborates with Dr. Keng Chou (Chemistry Dept.) for dSTORM system development and is part of UBC's Cardiovascular Research Group . Current projects include: Investigating RyR2 variants' pathogenicity using iPSC-derived cardiomyocytes Studying dynamic RyR2 interactions through post-translational modifications Developing novel correlative microscopy techniques Lab Members: The interdisciplinary team includes Dr. Parisa Asghari (Research Associate), Dr. David Scriven (Research Associate), and Saif Dababneh (MD/PhD student).

Kelly DrewView profile

Professor

• Hibernation Biology
• Neuroprotection
• Adenosine Receptor Agonists
• +5 more

Kelly Drew is a Professor in the Department of Chemistry and Biochemistry at the University of Alaska Fairbanks. She directs the NIH-funded Center for Transformative Research in Metabolism, a Center of Excellence in Hibernation Science, focusing on neuroprotective mechanisms in hibernators and their translation to neurocritical care. Her work bridges biochemistry, neuroscience, and physiology. B.S., Psychology (1981), University of Alaska Fairbanks Ph.D., Pharmacology (1987), Albany Medical College Post-doctoral Fellow, Pharmacology, Karolinska Institute (1987-1990) Research interests center on: Intrinsic neuroprotective properties of Arctic ground squirrel brains Synaptic remodeling during hibernation torpor and arousal Central nervous system regulation of metabolic suppression Therapeutic hypothermia applications Ischemia tolerance mechanisms Her publications highlight translational potential from hibernation biology to human critical care, particularly through adenosine receptor agonists. Scientific awards include the Dennis Demmert Award (2005), Usebelli Teaching Award (2006), and Sven O.E. Ebbesson Neuroscience Award (2006). Contact: kdrew@alaska.edu | Phone: 907-474-7190 | Address: Murie Building, Rm 223F, University of Alaska Fairbanks.