جستجوی استاد راهنمای دانشگاهی

Harris H. Wangمشاهده پروفایل

دانشیار

• Systems Biology
• Synthetic Biology
• Genome Engineering
• +۱۷ مورد دیگر

Harris H. Wang is an Associate Professor in the Department of Systems Biology and Department of Pathology and Cell Biology at Columbia University's Vagelos College of Physicians and Surgeons, where he also serves as Interim Chair of Systems Biology. He is affiliated with the Center for Computational Biology and Bioinformatics (C2B2) and the Integrated Program in Cellular, Molecular and Biomedical Studies (CMBS). B.S., Physics and Mathematics, MIT Ph.D., Biophysics, Harvard University Dr. Wang's research lies at the intersection of systems and synthetic biology, focusing on developing foundational technologies for genome engineering, microbiome manipulation, and synthetic genomics. His lab pioneers methods such as MAGE, MAGIC, CAST, and CAMII to enable high-throughput genetic manipulation, in situ microbiome engineering, and AI-driven microbial culturomics. Key research themes include understanding microbial community dynamics, engineering cellular memory systems, designing biocontained genetic circuits, and applying synthetic biology to human health challenges in personalized medicine and infectious disease. His recent publications reveal a strong trend in spatial and functional metagenomics, CRISPR-based microbiome editing, and synthetic biology tools for data storage and genetic stability. The articles span high-impact journals like Nature , Science , and Nature Biotechnology , reflecting his leadership in developing scalable, programmable biological systems. Scientific Awards: NIH Director’s Early Independence Award Forbes 30 Under 30 in Science Sloan Research Fellowship NSF CAREER Award ONR Young Investigator Award Burroughs Wellcome Fund PATH Award Schaefer Scholar Blavatnik National Award Vilcek Prize PECASE Dr. Wang has advised numerous PhD and postdoctoral researchers, many of whom have gone on to independent scientific careers. His lab is supported by major grants from NIH, NSF, DARPA, DOE, and foundations including the Bill & Melinda Gates Foundation and CZ Biohub NY. He is actively involved in educational initiatives, including organizing Columbia’s iGEM team and the Cold Spring Harbor Laboratory Synthetic Biology course. The Wang Lab is based at the Columbia University Irving Medical Center and is part of national consortia such as the Engineering Biology Research Consortium (EBRC) and the Genome Project-Write (GP-Write) initiative. The lab develops and applies cutting-edge technologies in automation, machine learning, and synthetic biology to engineer microbiomes for applications in medicine, global health, and climate change.

Alexis Battleمشاهده پروفایل

دانشیار

• Genomics
• Machine Learning
• Computational Biology
• +۳ مورد دیگر

Alexis Battle is an Associate Professor at Johns Hopkins University with appointments in Biomedical Engineering , Computer Science , and Genetic Medicine (secondary). She directs the Malone Center for Engineering in Healthcare and serves as Deputy Director of the Data Science and AI Institute . Educated at Stanford University (PhD in Computer Science, 2013), Battle transitioned to academia after leadership roles at Google. Research Focus: Battle’s work bridges genomics and machine learning , emphasizing the impact of genetic variation on human health. Her lab develops tools like Watershed to predict functional effects of rare variants, aiming to enhance rare disease diagnosis. Key themes include non-coding DNA analysis , personalized genomics , and systems biology , with applications in cardiovascular disease and neurodegenerative disorders . Publications & Awards: Over 60 peer-reviewed articles in journals like Nature , Science , and Genome Biology , with recent emphasis on single-cell transcriptomics , multiomics integration , and telomere biology . Recipient of the President’s Frontier Award (2022), Microsoft Investigator Fellowship (2019), and Searle Scholar (2016). Scientific Awards: 2022 President’s Frontier Award 2019 Microsoft Investigator Fellowship 2019 Johns Hopkins Discovery Award 2017 Johns Hopkins Catalyst Award 2016 Searle Scholar Advising & Funding: Mentors 11 PhD students, 3 undergraduates, and postdoctoral fellows. Her research is funded by NIH, Searle Scholars, and institutional grants. The Battle Lab collaborates on projects like the GTEx Consortium , focusing on gene regulation and clinical genomics .

Gareth Robertsمشاهده پروفایل

دانشیار

• Language Evolution
• Language Change
• Language Variation
• +۷ مورد دیگر

Gareth Roberts is an Associate Professor in the Department of Linguistics at the University of Pennsylvania, where he serves as Graduate Chair. He is also a faculty member of the Psychology Graduate Group, founder and director of the Cultural Evolution of Language Lab, and co-director of the Social and Cultural Evolution Working Group at Penn. Roberts earned his PhD in Linguistics from the University of Edinburgh in 2010, following an MSc in Evolution of Language and Cognition (2006) and a BA in German and Russian (2003) from the University of Nottingham. His academic journey includes postdoctoral positions at Yeshiva University and the University of Stirling before joining Penn as an Assistant Professor in 2014, where he was promoted to Associate Professor in 2022. His research focuses on the role of social and communicative pressures in shaping language emergence and evolution. Roberts investigates fundamental questions about linguistic variant spread, phonological system structuring, and how communication shapes linguistic structure. His work bridges linguistics, cognitive science, and cultural evolution through innovative experimental approaches using artificial languages and laboratory simulations. Analysis of Roberts' recent publications reveals a consistent focus on experimental semiotics, with particular attention to social biases in language evolution, phonological organization, indexicality emergence, and the dynamics of linguistic variation. His work often combines computational modeling with human experiments to isolate specific mechanisms driving language change. Linguistic Society of America Cognitive Science Society Philological Society Cultural Evolution Society Roberts has successfully secured substantial research funding including an NSF PAC Grant ($102,648), Penn URF Research Grants ($12,155), MindCORE initiative grant ($600,000), and multiple smaller grants totaling over $20,000. His lab currently includes researchers investigating diverse topics from case and gender marking emergence to AI agent effects on group dynamics, linguistic and genetic data in British history, and phonological space organization. The Cultural Evolution of Language Lab, which Roberts founded and directs, conducts cutting-edge research using experimental semiotics methodologies. Current projects examine how social factors influence language change, the emergence of linguistic structure through communication, and the interaction between iconicity and combinatoriality in communication systems.

Anthony Rollettمشاهده پروفایل

استاد

• Additive Manufacturing
• Advanced Materials Processing and Manufacturing
• Digital Twins
• +۶ مورد دیگر

Anthony Rollett is a Professor in the Department of Materials Science and Engineering at Carnegie Mellon University , where he has been a faculty member since 1995. He serves as the Principal Investigator and Co-Director of the NASA-supported Institute for Model-Based Qualification & Certification of Additive Manufacturing (IMQCAM) and co-director of the Next Manufacturing Center . Prior to CMU, he held leadership roles at Los Alamos National Laboratory (1991-1995). Education: Ph.D., Materials Engineering, Drexel University (1987) MA, Metallurgy and Materials Science, Cambridge University (1977) Research Interests: Rollett’s work focuses on microstructural evolution and microstructure-property relationships in 3D using experiments and simulations. His expertise spans additive manufacturing , metal 3D printing , materials for energy systems , grain growth , recrystallization , and stereology , with techniques like high-energy diffraction microscopy (HEDM) and dynamic x-ray radiography (DXR) . Scientific Contributions: He has over 320 peer-reviewed publications and an h-index >80 . His recent articles highlight machine learning for laser processing , fatigue analysis of additively manufactured alloys, and design optimization for heat exchangers in supercritical CO2 and solar thermal applications . Scientific Awards: Fellow of ASM International (1996) Fellow of the Institute of Physics (UK) (2004) Fellow of The Minerals, Metals & Materials Society (TMS) (2011) Cyril Stanley Smith Award (TMS, 2014) Member of Honor, French Metallurgical Society (2015) US Steel Professor (2017) Francqui International Professor (2020-2021) International FAME Award (2023) Leadership & Impact: Rollett co-led the development of a NASA Space Technology Research Institute for additive manufacturing and established a new master’s program in additive manufacturing (2018). His research group is funded by industry , federal agencies , and Pennsylvania state grants . He also serves on the Basic Energy Science Advisory Committee and Defense Programs Advisory Committee for the Department of Energy.

• Nuclear Magnetic Resonance (NMR)
• In vivo imaging
• MRI pulse sequence development
• +۷ مورد دیگر

Professor Guy Williams is a leading academic at the University of Cambridge with a focus on imaging science and clinical neurosciences, affiliated with Downing College and the Wolfson Brain Imaging Centre . Holding a PhD in Physics from his initial Natural Sciences degree, he specializes in nuclear magnetic resonance (NMR) and MRI techniques for brain imaging. Education: BA, PhD in Physics His research centers on non-invasive imaging of brain structure and function, particularly in traumatic brain injury (TBI) and dementia. His work involves developing novel MRI pulse sequences and advanced data analysis algorithms, including AI-based diagnostic tools. He leads studies on white matter integrity post-trauma, longitudinal dementia assessment, and applications of MRI in disorders of consciousness and addiction. Recent publications highlight collaborations in traumatic brain injury outcomes, AI-guided dementia prediction, and neuroimaging of post-COVID cognitive deficits. His team's work on ultra-high field laminar fMRI and distortion correction methods has advanced clinical neuroscience applications. Key techniques include diffusion tensor imaging (DTI), 7 Tesla MRI, and positron emission tomography (PET/MR). His research spans from basic NMR physics to clinical translation, with a strong emphasis on multi-site studies and real-world diagnostic implementation.

Brian Hieمشاهده پروفایل

استادیار

• Machine Learning
• Computational Biology
• Protein Engineering
• +۶ مورد دیگر

Brian Hie is an Assistant Professor of Chemical Engineering at Stanford University , a Dieter Schwarz Foundation Stanford Data Science Faculty Fellow , and an Innovation Investigator at Arc Institute . He leads the Laboratory of Evolutionary Design , focusing on the intersection of biology and machine learning . His prior roles include a Stanford Science Fellow in the Stanford University School of Medicine and a Visiting Researcher at Meta AI . Education: Ph.D. , Electrical Engineering and Computer Science , Massachusetts Institute of Technology (2021) Bachelor’s Degree , Stanford University Research Interests: Brian’s work bridges machine learning and computational biology , with a focus on protein engineering , single-cell RNA sequencing , and viral evolution . His Evolutionary velocity framework predicts protein evolutionary dynamics across timescales, while his Scanorama algorithm enables efficient integration of heterogeneous single-cell datasets. He also develops structure-informed language models for antibody optimization and uncertainty-aware ML for biological discovery. Publication Trends: His recent work (2023) emphasizes structure-based inverse folding for antibody evolution, evolutionary scale modeling , and unsupervised optimization . Earlier studies (2022-2021) cover evolutionary velocity , multi-modal single-cell analysis , and viral escape prediction using natural language analogies. Scientific Awards: Stanford Science Fellow (2021) National Defense Science and Engineering Graduate Fellowship (2019) Advising: He mentors doctoral students including Brandon Ameglio , Garyk Brixi , and Chang M. Yun , with a focus on biological design and computational methods . Labs & Collaborations: His lab collaborates with Bio-X and the Institute for Human-Centered Artificial Intelligence (HAI) , and he maintains affiliations with Sarafan ChEM-H and Stanford Data Science .

Pekka Marttinenمشاهده پروفایل

دانشیار

• Machine Learning
• Large Language Models
• Reinforcement Learning
• +۸ مورد دیگر

Pekka Marttinen is a tenured Associate Professor of Machine Learning at Aalto University, Department of Computer Science, and leads the Machine Learning for Health (Aalto-ML4H) group within the Helsinki Institute for Information Technology HIIT. Education: M.Sc. in Applied Mathematics, University of Helsinki (2004) Ph.D. in Statistics, University of Helsinki (2008) Title of Docent in Information and Computer Science, Aalto University (2015) Research Focus: His methodological work spans large language models, reinforcement learning, deep learning, probabilistic machine learning, and causal inference . These techniques are applied to critical domains of healthcare, bioinformatics, statistical genetics, epidemiology, and personalized medicine . The group develops novel algorithms, theoretical guarantees, and open-source software that enable data-driven discovery and decision-making in medicine and biology. Publication Trends: Across 2022-2024 the lab has concentrated on (i) rigorous causal reasoning over temporal clinical data, (ii) principled uncertainty quantification in LLMs, (iii) representation learning for neural network comparison, and (iv) translational projects that turn raw EHRs into actionable clinical insights. Earlier work integrated high-dimensional genomics with metabolomics and mapped evolutionary forces in bacterial pathogens. Scientific Awards & Recognition: While no specific awards are listed, his sustained publication record in top-tier venues (NeurIPS, ICML, AISTATS, Nature Genetics, PLOS CB) and his role as responsible professor of the Machine-Learning, Data-Science and AI major signify significant peer recognition. Advising & Grants: Prof. Marttinen currently mentors 8 PhD students as primary supervisor and an additional 7 PhD students as co-supervisor. He has already graduated 8 PhDs since 2014. The group is supported through competitive funding including the Finnish Center for Artificial Intelligence (FCAI) doctoral program. Labs & Teams: He directs the Machine Learning for Health (Aalto-ML4H) research group, comprising postdocs Hans Moen, Ti John, Alexander Nikitin, Negar Safinianaini, Linli Zhang, Zhiyuan Li, and the above-mentioned PhD cohort.

• Tropical Medicine
• Travel Medicine
• Migrant Health
• +۳ مورد دیگر

Sapha Barkati, MD, MSc is an Assistant Professor at the Department of Medicine, Faculty of Medicine and Health Sciences, McGill University , and an Investigator at the RI-MUHC Glen site . Her work bridges clinical practice and research in tropical medicine, focusing on parasitic diseases affecting vulnerable populations. Affiliations: Assistant Professor, McGill University Investigator, Research Institute of the McGill University Health Centre (RI-MUHC) McGill International Tuberculosis Centre Research Focus: Specializes in neglected tropical diseases like strongyloidiasis and tegumentary leishmaniasis, particularly among migrants and immunocompromised individuals. Studies include: Physician awareness of Strongyloides screening Prevalence patterns in non-endemic countries HTLV-1 co-infection treatment response Cost-effective screening strategies Scientific Contributions: Key publications address tropical disease management in non-endemic settings, mpox outbreak dynamics, and SARS-CoV-2 immunity patterns. Her work emphasizes evidence-based guidelines for: Parasite screening in transplant recipients Leishmaniasis treatment protocols Traveler disease prevention Collaborative Networks: Partners with institutions like Universidad Peruana Cayetano Heredia and participates in GeoSentinel surveillance. Leads studies on: Covid-19 health disparities Vaccine effectiveness against variants Remote patient monitoring systems

Jacques Archambaultمشاهده پروفایل

استاد

• Human Papillomavirus (HPV)
• Polyomavirus
• Viral DNA Replication
• +۴ مورد دیگر

Dr. Jacques Archambault is a Professor in the Department of Microbiology and Immunology at McGill University , and an associate member of the Division of Experimental Medicine since 2016. His research focuses on the molecular biology and pathogenesis of human papillomaviruses (HPVs) and polyomaviruses (HPyVs), with an emphasis on their replication mechanisms as episomes in host cells. The Archambault laboratory employs functional genomics, proteomics, and chemical biology approaches to identify cellular pathways exploited by these viruses and develop high-throughput assays for screening small molecule inhibitors of viral replication. Analysis of his recent publications reveals a strong focus on HPV and HPyV replication machinery, including studies on the E1 helicase, UAF1-USP1 interactions, and structural characterization of viral proteins involved in DNA replication. His work bridges virology, oncology, and drug discovery, particularly targeting oncogenic HPV types implicated in anogenital and oropharyngeal cancers, as well as HPyVs like BKPyV and JCPyV that cause pathologies in immunosuppressed patients. Current efforts in the lab aim to elucidate the molecular mechanisms by which HPVs and HPyVs replicate their genomes and to develop antiviral therapies targeting these processes. Techniques such as fluorescence anisotropy, NMR spectroscopy, and crystallography are frequently employed to study protein-DNA and protein-protein interactions critical to viral replication.

• Statistical Genomics and Bioinformatics
• High-Dimensional Data Analysis
• Bayesian Statistics
• +۴ مورد دیگر

Shili Lin is a Professor of Statistics at The Ohio State University's Department of Statistics, within the College of Arts and Sciences. She joined the faculty in 1995 after serving as the Neyman Visiting Assistant Professor at the University of California, Berkeley. Her expertise spans statistical genomics, bioinformatics, high-dimensional data analysis, Bayesian statistics, and Monte Carlo methods. Lin collaborates extensively with medical researchers to address challenges in genomic data such as ultra-high dimensionality, complex dependencies, and sparsity, focusing on diseases like cancer, multiple sclerosis, tuberculosis, and diabetes. She has contributed to developing computational tools for analyzing chromatin interactions, methylation patterns, and metagenomic samples. Lin holds a PhD from the University of Washington (1993). Her professional roles include serving as an Associate Editor for Biometrics , Statistical Applications in Genetics and Molecular Biology , and Statistics in Biosciences , as well as an Editorial Board member for Genetic Epidemiology . She is a standing member of NIH's Biostatistical Methods and Research Design Study Section and has served on multiple NSF and NIH grant review panels. Additionally, she is President Elect of the Caucus for Women in Statistics and has been a member of the ASA Committee on AAAS representation for six years. Her research interests emphasize statistical methodologies tailored to genomic data, including model selection, epigenetic analysis, and integrative approaches for multi-omics data. Lin's work often combines theoretical advancements with practical applications, such as predicting relapse in immune-mediated disorders and improving imputation techniques for single-cell Hi-C analysis. She has pioneered software tools like TopKLists and GrammR to facilitate ranked list aggregation and metagenomic data analysis. Lin's scientific accolades include ASA Fellowship (2004), AAAS Fellowship (2009), and membership in the International Statistical Institute (2014). Her contributions to statistical genetics and epigenomics have been recognized through grants and editorial leadership roles. While her research group focuses on cutting-edge methods, no formal advisees or students are explicitly listed in the provided materials.

• Statistical Genomics
• Computational Immunology
• Human Genetics
• +۲ مورد دیگر

Yang Luo is a Kennedy Trust Senior Research Fellow in Data Science at the University of Oxford's Kennedy Institute of Rheumatology. His research bridges statistical genomics and computational immunology to unravel genetic contributions to immune-mediated traits, with a focus on the major histocompatibility complex (MHC) region. His work leverages large biobank datasets (UK Biobank, Biobank Japan), gene expression resources (GTEx), and proteomic data to decode molecular mechanisms linking genetic variation to disease risk. Specific interests include tuberculosis genetics, multi-ancestry polygenic risk scores, and single-cell eQTL modeling. Recent publications highlight expertise in HLA association studies, evolutionary immunogenetics, and disease-specific cell state dynamics. Key contributions include constructing a global HLA haplotype panel and developing novel statistical methods for admixed population genetics. Scientific Awards: Kennedy Trust Senior Research Fellow in Data Science His lab integrates computational and experimental approaches to translate genetic findings into clinical applications for immune disorders.

• Machine Learning
• Bioinformatics
• Computational Biology
• +۵ مورد دیگر

Jian Peng is an Assistant Professor in the Department of Computer Science at the University of Illinois at Urbana-Champaign. His research focuses on computational biology, machine learning, and their applications to protein structure prediction, drug design, and molecular modeling. He has contributed to advancements in antibody engineering, protein-ligand docking, and generative models for biological systems. Key research areas include: Machine Learning for Molecular Modeling Protein Structure Prediction Antibody and Peptide Design Genomics and Single-Cell Analysis Structure-Based Drug Discovery His work emphasizes integrating deep learning techniques with biological datasets to address challenges in precision medicine, drug development, and systems biology. Notable achievements include developing the FastFold system to accelerate AlphaFold training and pioneering flow-based methods for antibody design. Awards include the Overton Prize (2020), recognizing contributions to computational biology. His research has been published in top journals and conferences, spanning topics from protein mutation prediction to geodesic-based immune complex modeling.

Maria Chikinaمشاهده پروفایل

استادیار

• Computational Biology
• Genomics
• Machine Learning
• +۷ مورد دیگر

Maria Chikina is an Assistant Professor at the University of Pittsburgh School of Medicine's Department of Computational and Systems Biology. She holds a PhD in Molecular Biology from Princeton University. Her research focuses on developing computational methods to analyze large-scale genomic datasets, bridging statistical rigor with biological insights to overcome experimental biases. Key research areas include latent variable modeling (e.g., PLIER, CellCODE), interpretable neural networks for sequence-to-function modeling, evolutionary rate analysis (RERconverge), and applications in tumor immunology, exercise genomics, and infectious disease (e.g., SARS-CoV-2). Her lab has developed tools like InstaPrism, NIFA, and L0 segmentation for data-driven biological discovery. Her work spans collaborations with institutions like UPMC (on tumor microenvironment) and the Molecular Transducers of Physical Activity Consortium (MoTraPAC). Notable projects include analyzing convergent evolution in marine mammals and subterranean species, and developing epigenetic biomarkers for disease states through the ECHO program. Lab members include PhD students (Rezwan Hosseini, Tugrul Balci) and postdocs (Tina Subic, Anish Sevekari). Past students Wynn Meyer now leads a group at Lehigh University. Her group emphasizes open-source tools (GitHub repository ChikinaLab) and interdisciplinary approaches to systems biology challenges.

Rachel Sippyمشاهده پروفایل

پژوهشگر ارشد

• Epidemiology
• Vector-Borne Diseases
• Dengue Fever
• +۴ مورد دیگر

Rachel Sippy is a Research Fellow at the University of Cambridge , specializing in epidemiology and infectious disease dynamics within the Department of Psychiatry . Her work bridges public health, climate science, and computational methods.

• Corrosion and Surface Technology
• Hydrogen Embrittlement of Metals
• Material Technology for the Oil Industry
• +۴ مورد دیگر

Roy Johnsen is a Professor in the Department of Mechanical and Industrial Engineering at the Norwegian University of Science and Technology (NTNU), specializing in corrosion and surface technology. With a Dr.ing. degree from NTH (1984), he has extensive industry experience from Statoil Research Centre (1985-1991) and CorrOcean (1991-2004), where he expanded the company globally. His current research focuses on hydrogen embrittlement, corrosion protection, and integrity management in offshore systems, with collaborations across Europe, Asia, and the Americas.