جستجوی استاد راهنمای دانشگاهی

Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

• Bioinformatics
• Machine Learning
• Deep Learning
• +۵ مورد دیگر

Peter Brodersen is a Professor at the Department of Biology, University of Copenhagen , specializing in Bioinformatics and RNA Biology . His research focuses on RNA modification (m6A), YTHDF proteins, and small RNA pathways in plants. Recent research trends from his group include: (1) molecular mechanisms of ARGONAUTE-small RNA interactions, (2) m6A-YTHDF regulatory systems in plant development, and (3) RNAi-independent roles of DICER-LIKE proteins in antiviral defense. Collaborations span Denmark and international institutions. Publications highlight cross-disciplinary work bridging computational biology and experimental plant genetics. Key subfields include RNA structure, epigenetic regulation, and antiviral immunity.

• RNA Biology
• Bioinformatics
• Plant Molecular Biology
• +۴ مورد دیگر

Thomas Pape is a Professor at The Natural History Museum of the University of Copenhagen, specializing in the systematics, taxonomy, phylogeny, biogeography and evolution of Diptera (two-winged insects), with special emphasis on Calyptratae families including Sarcophagidae, Oestridae, and Calliphoridae. He has been a professor since 2025 after serving as an Associate Professor from 2004-2024. PhD from Copenhagen University (1990) Docent at Stockholm University (1998) Associate Professor at Danish Bilharziasis Laboratory (1990-1992) Research Entomologist at Naturhistoriska Riksmuseet, Stockholm (1994-2004) His research spans taxonomy, systematics, phylogeny, biogeography and evolution of Diptera with special emphasis on calyptrate families. He collaborates on Systema Dipterorum, conducts comparative larval morphology studies, and investigates the phylogeny of Calyptrata. His work includes Diptera nomenclature and large-scale biodiversity inventories. Analysis of his recent publications reveals a strong trend toward molecular phylogenetics (using RAD-seq and anchored phylogenomics), forensic entomology applications, and biodiversity informatics. His research spans entomology, systematics, evolutionary biology, and increasingly intersects with bioinformatics and conservation science, with significant contributions to understanding flesh flies, bot flies, and blow flies. President of the International Council of Zoological Nomenclature (since 2016) Chair of the Council for the International Congresses of Dipterology (2010-2018) Member of editorial boards for Entomotropica, Studia dipterologica, Stuttgarter Beiträge zur Naturkunde, and Tijdschrift voor Entomologie Dr. Pape teaches courses in Entomology (structure, phylogeny and biology of terrestrial arthropods), Field Biology II - Zoology, and Ecology and Evolution of East Africa (a 2-week field course in Tanzania with Nikolaj Scharff). He has served on scientific panels for SYNTHESYS and as chair of the scientific advisory committee for Museum Koenig in Bonn (2006-2009). His research group employs both morphological and molecular approaches to address evolutionary questions in Diptera, with particular expertise in calyptrate families. The laboratory maintains active international collaborations across multiple continents, as evidenced by his extensive publication record and research network.

• Systematics
• Taxonomy
• Phylogeny
• +۷ مورد دیگر

Michael Kjær is a Clinical Professor at the Department of Clinical Medicine, University of Copenhagen, Faculty of Health and Medical Sciences. He specializes in Internal Medicine: Rheumatology and leads research groups focused on exercise physiology, sports injuries, and aging. His work addresses the impact of physical activity on the human organism, with particular emphasis on tissue damage and repair mechanisms. Dr. Kjær's primary research interests center around sports medicine, physiology, and exercise science. His work investigates tendon pathology, muscle physiology, sports injuries, and the effects of exercise on aging populations. He has made significant contributions to understanding sports-related injuries, particularly tendon overuse conditions, and the physiological responses to physical activity across different age groups. His recent publications (2025) demonstrate a strong focus on tendon research, sports injury treatment dilemmas, effects of anabolic steroid abuse, muscle physiology, and bone health in athletes and older adults. The research spans from basic science investigations of cellular mechanisms to clinical studies addressing practical sports medicine challenges. His work shows particular strength in connecting molecular and tissue-level changes with clinical outcomes in sports medicine. With 415 research outputs including 369 journal articles, 15 book chapters, and 15 reviews, Dr. Kjær maintains an active research program with substantial impact. His work has been referenced in Wikipedia pages, cited by Bluesky users, and picked up by news outlets, demonstrating its relevance to both academic and public discourse. Dr. Kjær leads multiple research groups within the Center for Healthy Aging Damage and Repair at the Department of Clinical Medicine. His laboratory work focuses on tissue response to injury and exercise, particularly examining tendon and muscle physiology using both in vivo and in vitro approaches. His research bridges basic science with clinical applications in sports medicine and rehabilitation.

• Sports Medicine
• Physiology
• Sports Injury
• +۴ مورد دیگر

Jens S. Andersen is a Professor in the Department of Biochemistry and Molecular Biology at the University of Southern Denmark, where he leads research in Biomedical Mass Spectrometry and Systems Biology. His work is centered on the development and application of quantitative mass spectrometry and microscopy-based proteomics to study human cell biology, particularly the structure and function of organelles such as centrosomes, cilia, autophagosomes, and mitochondria. His research focuses on determining the protein composition and dynamic properties of cellular organelles, the roles of specific protein groups, and their contributions to biological processes and diseases. He investigates cell signaling mediated by post-translational modifications, especially within the DNA damage response, autophagy, and immune systems. His lab, the Jens S. Andersen Lab, is part of the Research Section of Biomedical Mass Spectrometry. The analysis of his recent publications reveals a strong interdisciplinary trend combining proteomics, structural biology, and cell signaling. His work spans cilia biology, RNA metabolism, DNA repair, and cancer mechanisms, with frequent use of advanced techniques like mass spectrometry, CRISPR, and live-cell imaging. The integration of systems biology approaches is evident across his research outputs. Professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark Head of Research, Biomedical Mass Spectrometry and Systems Biology Principal Investigator, Jens S. Andersen Lab ORCID: 0000-0002-6091-140X While no specific scientific awards are mentioned in the provided texts, his extensive publication record in high-impact journals such as Science , Nature Communications , Molecular Cell , and EMBO Journal reflects significant scholarly contributions. He has supervised research projects and collaborated widely across Europe, though specific names of students are not listed. His research is supported by multiple ongoing projects, reflecting sustained funding and academic leadership. The Jens S. Andersen Lab operates at the intersection of proteomics and cell biology, contributing to fundamental understanding of organelle dynamics and disease mechanisms. The lab's work is highly collaborative, involving partnerships with groups in structural biology, RNA research, and cancer biology.

• Proteomics
• Quantitative Mass Spectrometry
• Cell Biology
• +۱۱ مورد دیگر

Konstantinos Kalogeropoulos is an Assistant Professor at the Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU), leading research at the Cell Diversity Lab. His work bridges proteomics, computational biology, and snake venom research. Current projects: "The Proteomic Landscape during Influenza Infection" (2022-2025) Supervisor for PhD projects on protease network rewiring in psoriasis and wound exudate degradomics Research interests include: Proteomic analysis of inflammatory diseases Snake venom toxin structure prediction Extracellular matrix biomechanics De novo peptide sequencing algorithms Computational modeling of protease networks Recent article trends demonstrate his work in • Database-free proteomics (InstaNovo/InstaNexus) • Snake venom pathophysiology (V-ToCs clustering) • Inflammatory disease biomarkers (psoriasis, impaired healing) • Extracellular matrix mechanics (fibronectin tension, gut inflammation) Advising: Supervises PhD students Polhaus, C. J. M. and Haack, A. M., focusing on protease networks and wound healing.

• Proteomics
• Snake Venom Research
• Protein Structure Prediction
• +۳ مورد دیگر

Anders Krogh is a Professor at the Department of Computer Science, University of Copenhagen, and also holds a position at the Department of Public Health in the Section for Health Data Science and AI. He serves as the head of the Center for Health Data Science (HeaDS) in the Faculty of Health and Medical Sciences. Previously, he was affiliated with the Department of Biology at the University of Copenhagen until 2020. Dr. Krogh earned his PhD in theoretical physics but transitioned into machine learning and bioinformatics during his doctoral studies. His research spans both theoretical foundations and practical applications in these fields. He is particularly renowned for his pioneering work on hidden Markov models for biological sequences, which has had significant impact in computational biology. In recent years, Krogh's research has focused on deep generative models applied to gene expression data and other biomedical applications. His work bridges computer science with healthcare, developing AI-driven approaches for precision medicine, cancer diagnostics, and analysis of complex biological systems. His current research integrates machine learning with quantum computing applications in biomolecular modeling. Analysis of his recent publications reveals a strong trend toward applying artificial intelligence to healthcare challenges, particularly in rare diseases, cancer diagnostics, and personalized medicine. His work increasingly incorporates federated learning approaches to address privacy concerns while enabling collaborative research across institutions. There's also a growing emphasis on quantum computing applications in biomolecular modeling and drug discovery. As head of the Center for Health Data Science, Krogh leads interdisciplinary research efforts that bring together computer scientists, medical researchers, and clinicians. His team develops novel computational frameworks like MOSAIC for multimodal analysis of rare cancers and multiDGD for multi-omics data integration. These tools are designed to translate AI innovations into clinical practice while addressing the unique challenges of medical data.

• Machine Learning
• Bioinformatics
• Deep Generative Models
• +۳ مورد دیگر

Mads Albertsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. He leads the Albertsen Lab and is a key member of the Center for Microbial Communities. His research focuses on high-throughput DNA sequencing methods to explore uncultivated microbes and populate the tree of life. He is actively involved in major interdisciplinary projects such as NanoEat , Microflora Danica , and DarkScience , funded by the European Research Council, Villum Foundation, and Poul Due Jensen Foundation. His research interests span metagenomics , long-read sequencing , bioinformatics , microbial ecology , and environmental biotechnology . He develops cutting-edge methods to improve throughput in microbial genome recovery and applies them to diverse areas including wastewater treatment, human microbiome studies, and infectious disease diagnostics. His work has significant implications for public health and sustainability. The recent publications highlight a strong trend in long-read sequencing (Oxford Nanopore), metagenome-assembled genomes (MAGs) , and microbial dark matter . His team has published high-impact papers in Nature , Nature Methods , and Nature Communications , with applications in environmental systems and clinical diagnostics, including SARS-CoV-2 and bloodstream infections. His scientific awards include: The Grundfos Prize (2021) The Fritz Kaufmann Prize (2021) The Rising Star Award by IWA & ISME (2016) Research Result of the Year in Denmark (2015) The Spar Nord Fond Research Prize (2015) Mads Albertsen advises numerous PhD students, leads externally funded research projects, and is involved in technology transfer through his co-founding of DNASense ApS (2014–2020). He also serves on scientific advisory boards and contributes to public policy, including as a member of the Danish SARS-CoV-2 variant risk-assessment group. He teaches courses in Data Science, Bioinformatics, Genomics, and Environmental Microbiology at Aalborg University. His lab, the Albertsen Lab , is part of the Center for Microbial Communities , a leading research center focused on microbial systems biology and environmental applications. The lab collaborates extensively with national and international partners in academia, industry, and public health institutions.

• Environmental Microbiology
• Metagenomics
• Microbial Ecology
• +۱۴ مورد دیگر

Claus Hélix-Nielsen is a Professor and Head of Department at the Department of Environmental and Resource Engineering, DTU Sustain, Technical University of Denmark. His research focuses on lipid-protein interactions, biomimetic membranes, membrane transport, and membrane channel proteins, utilizing electrophysiology, fluorescence spectroscopy, and computational modeling. Current Position: Professor and Head of Department Institution: Technical University of Denmark Research Unit: DTU Sustain Department: Environmental and Resource Engineering Research Interests: Dr. Hélix-Nielsen investigates how the hydrophobic coupling between transmembrane proteins and lipid bilayers regulates protein function through bilayer mechanical properties. His work also explores how these properties influence membrane dynamics, including vesiculation. He develops biomimetic membranes for biosensor and separation technologies, employing advanced techniques like Raman spectroscopy and molecular dynamics simulations. Recent Publications Trends: His 15 most recent articles emphasize biomimetic membrane engineering, membrane biophysics, and applications in environmental and biomedical fields. Topics range from artificial ion channels and drug delivery systems to computational modeling of lipid-protein interactions and environmental monitoring sensors. Techniques: Key methodologies include electrophysiology, fluorescence spectroscopy, electron paramagnetic resonance, Raman spectroscopy, and molecular dynamics simulations.

• Lipid-protein interactions
• Biomimetic membranes
• Membrane transport
• +۳ مورد دیگر

Søren Munch Kristiansen is an Associate Professor in the Department of Geoscience at Aarhus University, Faculty of Natural Sciences. His interdisciplinary research bridges geoscience and archaeology, focusing on the complex interactions between soil, water, and human societies across time. He is actively engaged in transdisciplinary projects involving geoarchaeology, groundwater, and public health. Research Interests: His work centers on how soil and groundwater have shaped human prehistory and continue to influence modern life. Key areas include safe drinking water from a lifelong perspective, geoarchaeological prospection, Viking Age settlements, and the application of geophysical and geochemical methods in archaeological contexts. He is particularly interested in novel, interdisciplinary methodologies. Recent Research Trends: His recent publications reveal a strong focus on integrating geophysical data (e.g., GPR, borehole databases) with archaeological interpretation, especially in 3D urban modeling and landscape change. Themes include Viking Age sites, interglacial deposits, and anthropogenic soil modifications. His work increasingly employs machine learning and large-scale data synthesis. Scientific Awards: No awards mentioned in the provided text. Advising and Grants: While specific students are not listed, he leads and participates in multiple funded research projects, indicating an active supervisory role. His grants span from 2016 to 2024, including projects like TITAN, SAGA, and 'Fingerprinting displaced molecular substances,' highlighting sustained funding and leadership in interdisciplinary geoscience-archaeology research. Labs and Teams: He is involved in collaborative networks such as the Soil Science & Archaeo-geophysics Alliance (SAGA), suggesting leadership in interdisciplinary research teams. His work often involves multi-proxy analyses and international collaborations, particularly in Scandinavian archaeological geophysics.

• Geoarchaeology
• Soil Science
• Groundwater
• +۷ مورد دیگر

Mikkel N. Schmidt is an Associate Professor in the Department of Applied Mathematics and Computer Science at the Technical University of Denmark (DTU). His research focuses on statistical modeling, Bayesian methods, and their applications in science and industry. He has held visiting roles at Columbia University (2007) and Cambridge University (2008-2009). His work integrates probabilistic modeling with computational inference to address complex problems in diverse fields such as molecular discovery, optical communication, and brain connectivity analysis. Education highlights include visiting scholar and postdoctoral experiences at top-tier institutions. Research interests span statistical methodology development, machine learning applications, and interdisciplinary problem-solving. Current projects involve Bayesian neural networks for molecular discovery and federated learning optimization. Advising efforts include supervising multiple PhD students in areas like molecular discovery and denoising diffusion models. Notable collaborations involve work on materials science, quantum communication, and medical signal processing. His contributions bridge theoretical advancements with practical industrial applications, emphasizing interdisciplinary innovation.

• Statistical Modeling
• Machine Learning
• Bayesian Methods
• +۳ مورد دیگر

Thomas J. D. Jørgensen is an Associate Professor and Head of the Research Section of Biomedical Mass Spectrometry at the Department of Biochemistry and Molecular Biology, University of Southern Denmark. He leads an active research group focusing on protein structural dynamics using mass spectrometry and hydrogen/deuterium exchange methodologies. His research interests lie at the intersection of biochemistry, structural biology, and systems biology, particularly in understanding how protein dynamics govern function and dysfunction in diseases such as Parkinson’s and metabolic disorders. He employs advanced mass spectrometry techniques to study conformational changes, protein-protein interactions, and enzyme regulation, with a strong emphasis on lipoprotein metabolism and neurodegenerative disease mechanisms. The most recent articles highlight a consistent focus on protein dynamics in lipid metabolism, conformational diseases, and glycoprotein analysis, utilizing hydrogen/deuterium exchange mass spectrometry (HDX-MS) and related techniques. Themes include allosteric regulation of enzymes, protein unfolding, and structural phenotyping of disease-related aggregates. Member of the evaluation committee at the Swedish Research Council (2015) Chairman of multiple PhD evaluation committees (2014) Editorial and peer-review contributions to the scientific community He currently supervises PhD students and is involved in several major research projects funded by organizations such as the Michael J. Fox Foundation and Novo Nordisk Fonden. His lab, the Thomas J. D. Jørgensen Lab, includes postdoctoral researchers, academic staff, and industrial PhD students, fostering a collaborative and interdisciplinary research environment focused on biomedical mass spectrometry and systems biology.

• Mass Spectrometry
• Hydrogen/Deuterium Exchange
• Protein Structural Dynamics
• +۷ مورد دیگر

Jens Øllgaard Duus is a Professor and Vice Dean at the Technical University of Denmark (DTU), with dual roles in the Office for Study Programmes and Student Affairs and the Center for Teaching and Learning in Engineering Education. His primary academic affiliation is with the Department of Chemistry at DTU, where he conducts advanced research in NMR spectroscopy and structural analysis of complex organic molecules. His research focuses on the development and application of analytical methods for carbohydrates, natural products, and peptides, with applications in food and pharmaceutical sciences. Key areas include glycosylation, enzyme mechanisms, and structural elucidation of bioactive compounds. His work contributes to UN Sustainable Development Goals in life sciences and analytical chemistry. The recent publications highlight a strong trend in glycoscience, particularly in enzyme-catalyzed glycosylation, structural analysis of polysaccharides, and engineering of glycosyltransferases and glycosidases for synthetic applications. His work bridges chemistry, biotechnology, and medicine. Jens Øllgaard Duus actively supervises multiple PhD students across interdisciplinary projects, including work on drug delivery to the CNS, nucleic acid analogues, and AI in education. He is involved in both fundamental and applied research, contributing to sustainable chemistry and biotechnology. Structural elucidation of novel pro-inflammatory polysaccharides from Daphne mezereum L. (2024) Denmark as the Energy Island Pioneer (2023) Promiscuous Yet Specific: A Methionine-Aromatic Interaction in Glycosyltransferase (2023) Engineered Hexosaminidase as a Glycoligase (2023) Family 1 Glycosyltransferase from Zea mays (2022) He has supervised PhD projects on generative AI in education, nucleic acid analogues, CNS drug delivery, and asymmetric catalysis. His leadership in educational innovation and research supervision underscores his dual impact on science and pedagogy. He is affiliated with research groups in chemistry and biotechnology at DTU, contributing to a collaborative network focused on sustainable science and engineering education. His work integrates analytical chemistry with biological applications, forming a unique interdisciplinary fingerprint.

• NMR Spectroscopy
• Analytical Chemistry
• Structural Chemistry
• +۱۲ مورد دیگر

Erwin Schoof is an Associate Professor at the Department of Biotechnology and Biomedicine , Technical University of Denmark. He leads the Cell Diversity Lab and focuses on advancing proteomics and mass spectrometry technologies. Expertise in single-cell proteomics , stem cell niches , and bioinformatics . Active in myelofibrosis and leukemia research , with applications in UN Sustainable Development Goals . Research Trends from 2025–2024 include: Machine learning-driven peptide sequencing (InstaNovo, InstaNexus). Single-cell resolution tools for mapping hematopoietic stem cells and tumor microenvironments . Biomarker discovery in chronic diseases and respiratory conditions . Supervision : Mentors multiple PhD students on single-cell proteomics , omics data analysis , and biotherapeutic production . Labs & Collaborations : Collaborates with international teams on plasma proteomics , 3D bioengineering , and advanced mass spectrometry workflows .

• Proteomics
• Mass Spectrometry
• Single-Cell Analysis
• +۷ مورد دیگر

Professor Guillermo Montoya is a Research Director and Group Leader at the Protein Structure & Function Program of the Novo Nordisk Foundation Center for Protein Research (CPR), University of Copenhagen, Denmark. His work focuses on unraveling cellular mechanisms at the atomic level through advanced methodologies including X-ray crystallography and cryo-electron microscopy. PhD in Chemistry, University of Zaragoza (1989–1993) MSc in Biochemistry, University of the Basque Country (1984–1989) Montoya's research spans Structural Molecular Biology and Genome Integrity , with specific emphasis on: Activation mechanisms of oligomeric kinases CRISPR-Cas12a conformational dynamics Macromolecular complexes in telomere maintenance His publications reveal significant contributions to CRISPR-Cas systems , kinase activation , and DNA/RNA degradation mechanisms . Scientific Awards: EMBO Member (2018) Spanish National Prize in Biomedicine (2009) Multiple Fellowships (EMBO, Marie Curie, FEBS, Marie Curie) Montoya's group integrates structural biology with cell biology to address fundamental questions in genome stability and biomedical applications. His work has been cited over 188 times for studies on CRISPR-Cas endonucleases and has attracted attention from 41 patents.

• Genome Integrity
• Structural Molecular Biology
• CRISPR-Cas Systems
• +۳ مورد دیگر