جست‌وجوی استاد و پژوهشگر

Michael Barkerمشاهده پروفایل

دانشیار

• Evolutionary Biology
• Genomics
• Plant Biology
• +۳ مورد دیگر

Michael S. Barker is an Associate Professor and Associate Department Head in the Department of Ecology and Evolutionary Biology at the University of Arizona. He leads the Bioinformatics Degree Program and has held academic roles since 2011. His research focuses on the origins of biodiversity through genomic events like polyploidy and hybridization, integrating computational tools with molecular and phylogenetic approaches. Education: Ph.D., Evolutionary Biology, Indiana University (2009) M.S., Botany, Miami University (2003) B.S., Biology, Denison University (2001) Research interests include genomic evolution, with studies on Brassica crops, Selaginella lycophytes, and macroevolutionary patterns across eukaryotes. His work bridges micro- and macroevolutionary scales to understand genome-driven diversity. Awards include the Botanical Society of America’s Emerging Leader Award (2016) and the NSERC-BRITE Postdoctoral Fellowship (2009–2010). He contributes to editorial roles, including editing a Special Issue on polyploidy in the American Journal of Botany . His lab collaborates widely, generating genomic data to explore evolutionary processes. While no specific grants or advising details are listed, his leadership roles highlight active mentorship and program development.

• Plant Genetics
• Genomics
• Crop Improvement
• +۱۲ مورد دیگر

Professor Donal O'Sullivan is a leading researcher in plant genetics and genomics at the University of Reading, affiliated with the School of Agriculture, Policy and Development and the Department of Crop Genetics. His research focuses on the genetic improvement of key crops such as wheat, barley, and faba bean, with an emphasis on disease resistance, seed quality, and genomic tools for breeding. His research interests span plant genetics , genomics , molecular breeding , legume improvement , and crop disease resistance . He has made significant contributions to understanding the genetic basis of traits such as rust resistance in wheat, vicine-convicine biosynthesis in faba bean, and flowering time in cereals. His work integrates high-throughput genomics, GWAS, QTL mapping, and functional characterization to advance sustainable crop improvement. His recent publications reveal a strong trend in legume genomics , particularly in faba bean, including the landmark sequencing of its large diploid genome and efforts to eliminate anti-nutritional factors. He also contributes to cereal genomics, with work on wheat and barley disease resistance and genetic mapping. His interdisciplinary approach bridges plant science, biochemistry, and agricultural sustainability. While no formal scientific awards are listed in the provided text, his work has been published in top-tier journals such as Nature , Nature Plants , and Theoretical and Applied Genetics , reflecting high scientific impact. Professor O'Sullivan actively collaborates with international breeding programs and research teams across Europe and beyond. He has contributed to major collaborative projects on genetic mapping, DUS testing, and climate-resilient crops. Although no direct mention of student supervision or grant leadership is present, his role as a senior co-author on numerous studies suggests mentorship and research leadership. His work supports the development of improved crop varieties through modern genomic tools, with implications for food security, nutrition, and sustainable agriculture.

• Genomics
• Genetics
• Animal Breeding
• +۳ مورد دیگر

Hendrik-Jan Megens is an Assistant Professor in Animal Breeding and Genetics at Wageningen University & Research (WUR), Netherlands, affiliated with the Wageningen Institute for Advanced Studies (WIAS). His dr.ir. title reflects a Dutch engineering doctorate, and he maintains an active research profile with over 200 publications and 51 datasets. His work integrates genomic analysis with conservation and aquaculture applications across vertebrate species. Research interests focus on: Genomic consequences of inbreeding in fragmented populations Environmental adaptation mechanisms in aquaculture species Structural variants in chromosome evolution Functional annotation of deleterious mutations Epigenetic regulation in reproductive transitions Genotype-environment interactions in growth traits Recent publications (2023-2025) reveal dual expertise in wildlife conservation (European wild boar, sharks) and aquaculture genomics (tilapia, seabream, oysters). Key trends include application of long-read sequencing (Pore-C) for structural variant detection, pCADD-based prioritization of causal mutations, and investigation of polyploidy effects in teleost fish. His work bridges fundamental evolutionary questions with practical breeding challenges. Megens has co-supervised 12 research projects including five PhD candidates: S. Ousley: Super corals project (reef restoration genomics) G. Kuguru: Black tipped reef shark diversity (Maldives) A. Blasweiler: AquaFAANG (fish health immunology) X. Yu: Nile tilapia adaptation architecture H. van Kruistum: Livebearing fish reproductive genomics He leads projects on genomic tools development (pCADD) and contributes to international consortia like the European Reference Genome Atlas. His team collaborates across WUR's Animal Breeding and Genetics group, focusing on translating genomic findings into conservation strategies and sustainable aquaculture practices through field studies and computational pipelines.

Kajsa Paulssonمشاهده پروفایل

استاد

• Cancer Genomics
• Leukemia Research
• Genetics
• +۳ مورد دیگر

Kajsa Paulsson is a Professor of Medical Genetics at Lund University, where she runs the Aneuploidy in Cancer research group at the Division of Clinical Genetics. She serves as a Principal Investigator at the Lund University Cancer Centre (LUCC) and manages the research team focused on aneuploidy in cancer. Dr. Paulsson is an expert in cancer genomics with extensive experience in classic genetic techniques including chromosome analysis and fluorescence in situ hybridization, as well as state-of-the-art methodologies such as SNP array analysis and next generation sequencing (NGS). Her research primarily focuses on understanding how aneuploidy (aberrant chromosome numbers) arises in somatic cells, how it affects tumorigenesis, and its correlation with prognosis and treatment response in cancer. Her specialized studies concentrate on high hyperdiploid and hypodiploid childhood acute lymphoblastic leukemia, with the ultimate goal of improving cancer patient survival through insights into tumorigenesis mechanisms. Analysis of Dr. Paulsson's publication record reveals a strong focus on the genomic architecture of pediatric acute lymphoblastic leukemia, with particular attention to chromosomal abnormalities, mutational signatures, and regulatory mechanisms. Her work spans from fundamental research on aneuploidy development to clinical applications examining treatment outcomes in specific leukemia subtypes. The research demonstrates increasing methodological sophistication with integration of multi-omics approaches including proteogenomics, Hi-C chromatin conformation analysis, and single-cell genomics, reflecting the evolving landscape of cancer genomics research. Dr. Paulsson has received significant recognition for her work, including the prestigious Samfundet Folkhälsan Albert de la Chapelle Prize in Medical Genetics in 2022 and the Senior Investigator Award from Cancerfonden in 2015. Her publications have been widely disseminated, with multiple papers highlighted by news outlets, referenced in clinical guidelines, and extensively read on academic platforms, demonstrating the translational impact of her research. As a supervisor and mentor, Dr. Paulsson leads active research projects including 'Non-coding mutations in pediatric acute lymphoblastic leukemia' (2021-2025), where she serves as the primary supervisor. She has been involved in the Epigenetics Theme at Pufendorf IAS, demonstrating her commitment to collaborative, interdisciplinary research that spans basic science and clinical applications. Her work contributes to UN Sustainable Development Goals related to health and well-being. Dr. Paulsson actively participates in the Lund University Cancer Centre (LUCC) ecosystem, regularly organizing and speaking at seminars and conferences including the LUCC Blood, Lymphoma & Myeloma series and the Swedish Cancer Research Meeting. Her laboratory focuses on the molecular mechanisms of aneuploidy in leukemia, particularly investigating how chromosomal abnormalities develop and impact treatment outcomes in childhood cancers, with direct implications for risk stratification and therapeutic decision-making in pediatric oncology.

Brendan Mumeyمشاهده پروفایل

استاد

• Algorithms
• Combinatorial optimization
• Computational biology
• +۴ مورد دیگر

Brendan Mumey is a Professor of Computer Science at Montana State University, affiliated with the Gianforte School of Computing under the College of Engineering. He holds a Ph.D. in Computer Science from the University of Washington (1997), an MS from the University of British Columbia, and a BS in Mathematics from the University of Alberta. His research focuses on applied algorithms, computational biology, and optimization, particularly in pangenomics, flow decomposition, and genomics. Key research areas include DNA/RNA sequence multiassembly, pangenomics, and algorithms for flow decomposition in networks. He is part of the Applied Algorithms Group and develops software through the MSU Algorithms Lab. Notable projects involve NSF-funded initiatives to scale flow decomposition and explore plant genetic diversity using pangenomic tools. Selected awards include multiple Excellence in Research Awards (2007, 2011, 2012, 2013) and an Excellence in Service Award (2011). His teaching spans algorithms, discrete structures, and computational biology at both undergraduate and graduate levels. Grants include NSF support for pangenomic tools, functional genomics, and interdisciplinary mentoring programs. Collaborative work emphasizes bridging theoretical algorithms with practical applications in biology and sustainability.

Charlie Cornwallisمشاهده پروفایل

استاد

• Molecular Ecology
• Evolutionary Biology
• Cooperative Behavior
• +۶ مورد دیگر

Charlie Cornwallis is a Professor in the Molecular Ecology and Evolution Lab at Lund University. His research focuses on evolutionary transitions, particularly the emergence and maintenance of complex life forms such as multicellularity, cooperative societies, and symbiotic relationships. Key areas include understanding why transitions occur, how complex systems persist, and factors causing their breakdown. Cornwallis employs experimental and phylogenetic methods, studying systems like cooperative breeding birds (ostriches) and green algae (Volvox/Chlamydomonas). Affiliations: Molecular Ecology and Evolution Lab, Swedish Research Council-funded projects Education: Not explicitly stated in text Research interests span cooperative behavior, thermal adaptation, disease dynamics, and genomic innovations enabling evolutionary transitions. Recent work addresses how fluctuating environments influence cooperation, pathogen-driven breakdown of sociality, and molecular mechanisms underlying cancer resilience via polyploidization. Cornwallis leads projects on ostrich thermal physiology, gut microbiota development, and symbiont-driven ecological diversification. His lab has produced 65+ publications, with notable contributions to Trends in Ecology and Evolution , Proceedings of the National Academy of Sciences , and Cancer Research Communications . Current projects include studying multicellular origins, temperature adaptation in endotherms, and evolutionary plasticity. Grants: Swedish Research Council (2023-2027), multiple international collaborations Labs/Teams: Cornwallis Group focuses on four themes: Cooperation, Evolutionary Innovation, Disease, and Sex

Matthias Stöckمشاهده پروفایل

پژوهشگر

• Evolutionary Genetics
• Sex Determination in Vertebrates
• Aquatic Ecology
• +۳ مورد دیگر

Matthias Stöck is a researcher at the Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB) in Berlin, Germany. He leads research on genetic and evolutionary processes in fish and other vertebrates , focusing on sex determination mechanisms, hybrid speciation, and environmental impacts on aquatic organisms. His work bridges molecular genetics and ecosystem-level dynamics. Research Themes: Evolution of sex chromosomes across vertebrates Environmental endocrine disruption effects Comparative genomics of fish and amphibians Biodiversity conservation in freshwater systems Key Article Trends: His recent publications analyze genomic responses to environmental stressors (e.g., synthetic androgens and estrogens), evolutionary patterns in hybrid and polyploid species, and conservation strategies for standing water ecosystems. Methodological contributions include the RADSex pipeline for sex determination studies. Projects: He leads the ODER~SO investigation into the 2022 Oder River environmental disaster and coordinates research on "Breaking the rules: modifications of sexual reproductive pathways in vertebrates" (2023-2026).

Marjorie Lundgrenمشاهده پروفایل

عضو هیئت علمی

• C2 photosynthesis
• C4 Evolution
• Plant Ecophysiology
• +۲ مورد دیگر

Dr. Marjorie Lundgren is a Senior Research Fellow at the Lancaster Environment Centre (LEC), Lancaster University . Her research focuses on the evolution of photosynthetic systems, particularly C2 and C4 photosynthesis, integrating plant ecophysiology, leaf anatomy, and phylogeographic methods. She earned her PhD from the University of Sheffield in 2015 and completed postdoctoral work at the University of Sheffield, Massachusetts Institute of Technology , and the Arnold Arboretum of Harvard University . She supervises 4 postgraduate research students, including Alvaro Herrera Seller and Quentin Herzig. Research Themes : Photosynthesis evolution, leaf anatomical adaptation, biogeography, and crop engineering. Scientific Leadership : Member of the LEC Photosynthesis Team and UKRI Future Leaders Fellow . Recent Research Trends : Her work bridges computational modeling, genomic analysis, and empirical studies to decode photosynthetic innovation. Key areas include C4 pathway optimization, anatomical constraints on carbon fixation, and climate-driven niche expansion in photosynthetic lineages. Collaborations span plant taxonomy (e.g., Alloteropsis semialata ), metabolic trade-offs in C2 systems, and data standardization initiatives like the ESS-DIVE reporting format . Scientific Awards : UKRI Future Leaders Fellow Advising and Collaborations : Supervises postgraduate projects on photosynthesis, leaf anatomy, and evolutionary physiology. Collaborates with institutions including Dryad, ESS-DIVE, and Harvard University’s Arnold Arboretum.

Korbinian Schneebergerمشاهده پروفایل

استاد

• Computational Genetics
• Genome Plasticity
• Plant Genomics
• +۶ مورد دیگر

Prof. Korbinian Schneeberger is a full Professor of Computational Genetics and Genome Plasticity at the Ludwig Maximilian University of Munich , embedded within the Graduate School of Life Science Munich (LSM) . He leads a multidisciplinary team of bioinformaticians, biologists, and biotechnologists, all driven by a shared curiosity in genomic technologies and plant genome evolution. Contact: k.schneeberger@lmu.de . Research Focus: Genome plasticity and mutational dynamics across plant species Development and refinement of next-generation sequencing and assembly pipelines Comparative genomics, pan-genome construction, and structural variation Epigenetic regulation and transposon biology in plant genomes Meiotic recombination and crossover patterning in holocentric plants Application of single-cell and single-nucleus technologies to dissect gamete-level variation His laboratory develops widely-used bioinformatics tools—including SHOREmap , findGSE , SyRI , and plotsr —that enable the community to assemble, compare, and interpret plant genomes at unprecedented resolution. Recent work advances understanding of centromere evolution, adaptation to extreme soils, layer-specific somatic mutation patterns in fruit trees, and large-scale Arabidopsis population genomics. Scientific Output & Impact: Since 2015, Prof. Schneeberger has published more than 60 peer-reviewed articles, many appearing in top-tier journals such as Nature Genetics , Nature Plants , and Genome Biology . His 2025 studies already tackle the mutational landscape of Arabidopsis centromeres, scalable eQTL mapping in gametes, and the phased pan-genome of tetraploid potato, underscoring a trajectory at the forefront of plant genomic science. Funding & Collaborations: Research in the Schneeberger Lab is supported by multiple national and international grants, providing resources for high-throughput sequencing, computational infrastructure, and interdisciplinary training. The group actively collaborates with leading plant research centers worldwide, sharing data and tools to accelerate discoveries in crop improvement and evolutionary biology. Team & Environment: The lab operates as a vibrant, international environment with state-of-the-art wet-lab and computational facilities. Trainees and staff benefit from the rich ecosystem of LSM, including structured doctoral programs, career mentoring, and access to cutting-edge core facilities.

Silvia Bulgheresiمشاهده پروفایل

دانشیار

• Symbiosis
• Microbial Ecology
• Bacterial Cell Biology
• +۷ مورد دیگر

Silvia Bulgheresi is an Associate Professor at the University of Vienna , leading the Environmental Cell Biology Group within the Department of Functional and Evolutionary Ecology. Her research focuses on the cell biology and physiology of animal-attached bacteria , particularly marine nematode-bacterium symbioses and oral cavity symbionts, with an emphasis on host immune responses and bacterial division mechanisms. Fields of Interest: Symbiosis, Microbial Ecology, Bacterial Cell Biology, Host-Microbe Interactions, Chemosynthetic Symbionts, Chromosome Biology Scientific Contributions: Her recent publications highlight innovations in bacterial division patterns, chromosome stability, and environmental adaptation. Current projects explore the role of the SMC complex in symbiont chromosome folding and the Genome Instability PhD program. She has supervised numerous PhD and Master students, including Niels Heindl and Nikolaus Leisch. Key Awards: EMBO Member (2014) European Molecular Biology Organization (EMBO) Member (2024) Labs & Collaborations: As part of the Archaea Biology and Ecogenomics Unit, her work intersects with research groups such as the Schleper Lab and Rittmann Lab, addressing microbial nitrogen cycling, marine symbioses, and bacterial genome plasticity.

• Molecular Plant Biology
• Phytopathology
• Genome Evolution
• +۵ مورد دیگر

Prof. Thomas Wicker is a Professor at the University of Zurich's Department of Plant and Microbial Biology, affiliated with the Mathematisch-naturwissenschaftliche Fakultät (Faculty of Mathematics and Natural Sciences). His research focuses on molecular plant biology, phytopathology, and genome evolution with an emphasis on transposable elements (TEs) and their role in genomic dynamics. Wicker leads the Molecular Plant Biology/Phytopathology group, developing computational tools for genome analysis and contributing to projects like the TREP database for transposable elements. His work integrates comparative genomics and bioinformatics to study plant-pathogen interactions, particularly in wheat and its fungal pathogens like powdery mildew. He also explores metagenomics of lichens and contributes to crop improvement through genomic studies. Education details are not explicitly stated in the provided texts, but his academic career includes positions as a Privatdozent (2011) and Titularprofessor (2021). His research has led to over 100 publications, including landmark studies on pathogen genome evolution and wheat resistance mechanisms. Collaborations include projects on einkorn wheat genomics and international efforts to map disease resistance genes. Wicker's lab develops publicly available bioinformatics software for genomic analysis, underscoring his commitment to open science. His work bridges fundamental research and applied agriculture, addressing challenges in crop resilience and genetic diversity. Wicker's scientific contributions include identifying mechanisms of TE-driven genome evolution, analyzing effector genes in pathogens, and tracing the global spread of plant diseases linked to historical human activity. His team's studies on wheat powdery mildew revealed hybridization events influencing pathogen adaptation, while metagenomics work on lichens explores symbiotic complexity. Teaching responsibilities include courses on plant biology and research internships, reflecting his engagement in training the next generation of scientists.

Meixia Zhaoمشاهده پروفایل

استادیار

• Genome Evolution
• Epigenetics
• Plant-Microbe Interactions
• +۴ مورد دیگر

Dr. Meixia Zhao is an Assistant Professor in the Department of Microbiology & Cell Science at the University of Florida. Previously, she held positions at Miami University (2018–2022) and was a postdoctoral researcher at Purdue University (2013–2017). She earned her PhD in Biochemistry and Molecular Biology from the Chinese Academy of Agricultural Sciences, with a visiting PhD in Plant Genetics at Purdue University. Her research focuses on using computational and functional genomic approaches to study genome evolution, epigenetic regulation of meiotic recombination, and plant-microorganism interactions in maize and soybean. Key areas include transposable element function, epigenetic silencing mechanisms, and disease resistance pathways. Her lab investigates mechanisms underlying maize and soybean immunity to pathogens like Phytophthora sansomeana , leveraging comparative genomics, epigenomics, and transcriptomics. Recent studies explore the role of DNA methylation, small RNAs, and histone modifications in regulating plant defense responses. She also examines sex-specific differences in meiotic recombination and the evolutionary consequences of polyploidization. Dr. Zhao has mentored over 20 graduate and undergraduate students, including those in the Plant Molecular and Cellular Biology (PMCB) program. Her work has been published in high-impact journals, focusing on topics like transposable element silencing, epigenetic variation, and crop disease resistance. The Zhao Lab collaborates with other groups to advance understanding of plant-microbe interactions and translational applications in agriculture.

Victor A. Albertمشاهده پروفایل

استاد

• Plant Evolutionary Biology
• Genomics
• Comparative Genomics
• +۷ مورد دیگر

Victor A. Albert is the Empire Innovation Professor of Biological Sciences at the University at Buffalo’s College of Arts and Sciences. His research focuses on plant evolutionary biology using genomic, developmental, and genetic approaches. Albert leads projects in tropical Southeast Asian flora genomics, carnivorous plant evolution, and the genomic basis of plant form diversification. Notable work includes sequencing the Amborella, avocado, and coffee genomes to elucidate ancestral angiosperm traits and agricultural adaptations. Education: AB/ScM (Brown University), PhD (UNC Chapel Hill), postdoctoral research at Uppsala University. Research interests emphasize genome sequencing of economically and evolutionarily significant plants, including coffee, avocado, and carnivorous species like Nepenthes and Utricularia. He investigates mechanisms of adaptive evolution such as gene co-option, polyploidization, and environmental adaptation. Key contributions include revealing the genomic basis of caffeine biosynthesis in coffee, understanding carnivorous plant digestive system evolution, and analyzing polyploid speciation in Hawaiian mints. Current projects explore rapid speciation mechanisms in Syzygium (myrtaceae) and climate change impacts on coffee cultivars. Awards: Not explicitly mentioned in available texts. Active in major collaborations like the Amborella Genome Project and GenBank submissions. Office hours by appointment.

Jenny Koebernickمشاهده پروفایل

دانشیار

• Plant Breeding
• Genetics
• Agricultural Science
• +۳ مورد دیگر

Jenny Koebernick is an Associate Professor in Cotton & Soybean Breeding at Auburn University’s College of Agriculture, within the Department of Crop, Soil & Environmental Sciences. Her work focuses on genetic improvement of cotton and soybean crops, with particular emphasis on disease resistance, seed quality traits, and sustainable agricultural practices. Her research integrates genomic technologies like genome-wide association studies (GWAS) and molecular diagnostics to address challenges such as Cercospora leaf blight, Corynespora cassiicola, and Cotton Leafroll Dwarf Virus (CLRDV). She collaborates on strategic plans for soybean genomics research and develops germplasm lines with enhanced agronomic traits. Recent studies explore interactions between genotype, environment, and management practices, including nutrient efficiency and pest/disease dynamics. Her work spans crop physiology, precision agriculture technologies, and extension efforts to improve Alabama’s agricultural productivity. Key contributions include optimizing cottonseed oil content, refining soybean test weight metrics, and advancing understanding of 65-year yield trends in U.S. cotton production. She leads interdisciplinary efforts to address CLRDV transmission and blueberry stem blight in Alabama’s agroecosystems.

Andrea Tarneckiمشاهده پروفایل

استادیار

• Aquaculture
• Marine Microbiology
• Shellfish Health
• +۳ مورد دیگر

Andrea Tarnecki is an Assistant Extension Professor at the School of Fisheries, Aquaculture & Aquatic Sciences , Auburn University. Her work bridges academic research and industry needs, focusing on shellfish farming challenges, microbiome dynamics, and sustainable aquaculture practices. Her research emphasizes improving shellfish health through genomic selection, microbial community analysis, and environmental resilience strategies. She collaborates closely with farmers and stakeholders, leveraging field trials, extension publications, and social media to disseminate practical solutions. Key research areas include disease resistance in oysters , microbial ecology in aquaculture systems , and environmental stress impacts on marine species . Recent work addresses genomic approaches to combat Dermo disease and explores probiotic applications to enhance shellfish immunity. Her publications reflect a focus on microbial diversity , oyster physiology , and toxicology of oil spills . She directs the Auburn University Shellfish Laboratory, a facility dedicated to applied research and industry partnerships. Dr. Tarnecki’s outreach efforts include managing social media platforms (Facebook, Instagram: @AUShellfishLab) and hosting seminars to connect academic findings with coastal communities.