جستجوی استاد راهنمای دانشگاهی

Osman Yağan is a Research Professor in the Department of Electrical and Computer Engineering at Carnegie Mellon University (CMU), with affiliate faculty status in the School of Computer Science. He is also a core member of CyLab Security and Privacy Institute. Prior to joining CMU in 2013, he was a Postdoctoral Research Fellow at CyLab. He holds a Ph.D. in Electrical and Computer Engineering from the University of Maryland (2011) and a B.S. from Middle East Technical University (2007). His research focuses on modeling, analysis, and optimization of computing systems, leveraging applied probability, network science, data science, and machine learning. Key areas include multi-armed bandits, resilient machine learning, contagion processes in networks, and cybersecurity. Research Interests include Machine Learning, Data Science, Network Science, Cybersecurity, and Robustness in Cyber-Physical Systems. He has advised numerous students, including current PhD candidates Yurun Tian, Orkun İrsoy, and Ishank Juneja, as well as notable alumni such as Mansi Sood (now at MIT) and Jun Zhao (Assistant Professor at Nanyang Technological University). Key Awards include the CIT Dean's Early Career Fellowship, IBM Academic Award, and Best Paper Awards at ICC 2021, IPSN 2022, and ASONAM 2023. His work spans theoretical contributions (e.g., contagion models in multi-layer networks) and applied research (e.g., mitigating cascading failures in power systems). He leads or co-leads grants from ONR, NSF, and ARO, focusing on resilient machine learning, network robustness, and pandemic modeling.

• Machine Learning
• Data Science
• Network Science
• +۷ مورد دیگر

Daniel Finley is a Professor of Cell Biology at Harvard Medical School (HMS), leading the Finley Lab focused on the ubiquitin-proteasome pathway and related regulatory mechanisms. He holds academic appointments within the Department of Cell Biology and sits on the Scientific Advisory Boards of Proteostasis and X-Chem Pharmaceuticals. His research investigates proteasome function, ubiquitin-like proteins, and proteostasis roles in diseases like Alzheimer’s and ALS. Dr. Finley earned his undergraduate degree in biochemistry from Harvard University and a Ph.D. in molecular biology from MIT. After postdoctoral training at MIT, he joined HMS in 1988. His lab explores topics including erythroid proteome remodeling, mitochondrial dysfunction, and neurodegenerative disease mechanisms. Key research areas include: (1) Ubiquitin-proteasome pathway regulation, (2) Proteasome structure/function, (3) Nonproteolytic roles of ubiquitination, and (4) Pathophysiological roles of proteostasis defects in diseases. His work bridges basic cell biology with translational medicine, particularly in neurodegeneration and anemia. Finley has secured NIH funding for projects like 'Regulation of Proteasome Activity' (R35GM145246) and 'Erythrocyte maturation through global proteome remodeling' (R01HL153970). Collaborations with industry and academic partners extend his impact in drug discovery and proteasome-targeted therapies. His lab’s contributions include defining ubiquitin chain editing mechanisms, identifying USP14’s role in mitophagy, and elucidating proteostasis defects in Alzheimer's models. Research tools developed include advanced cryo-EM analyses of proteasomal structures and functional assays for ubiquitin system enzymes.

• Ubiquitin-Proteasome Pathway
• Proteostasis
• Protein Degradation
• +۷ مورد دیگر

Gareth Roberts is an Associate Professor in the Department of Linguistics at the University of Pennsylvania, where he serves as Graduate Chair. He is also a faculty member of the Psychology Graduate Group, founder and director of the Cultural Evolution of Language Lab, and co-director of the Social and Cultural Evolution Working Group at Penn. Roberts earned his PhD in Linguistics from the University of Edinburgh in 2010, following an MSc in Evolution of Language and Cognition (2006) and a BA in German and Russian (2003) from the University of Nottingham. His academic journey includes postdoctoral positions at Yeshiva University and the University of Stirling before joining Penn as an Assistant Professor in 2014, where he was promoted to Associate Professor in 2022. His research focuses on the role of social and communicative pressures in shaping language emergence and evolution. Roberts investigates fundamental questions about linguistic variant spread, phonological system structuring, and how communication shapes linguistic structure. His work bridges linguistics, cognitive science, and cultural evolution through innovative experimental approaches using artificial languages and laboratory simulations. Analysis of Roberts' recent publications reveals a consistent focus on experimental semiotics, with particular attention to social biases in language evolution, phonological organization, indexicality emergence, and the dynamics of linguistic variation. His work often combines computational modeling with human experiments to isolate specific mechanisms driving language change. Linguistic Society of America Cognitive Science Society Philological Society Cultural Evolution Society Roberts has successfully secured substantial research funding including an NSF PAC Grant ($102,648), Penn URF Research Grants ($12,155), MindCORE initiative grant ($600,000), and multiple smaller grants totaling over $20,000. His lab currently includes researchers investigating diverse topics from case and gender marking emergence to AI agent effects on group dynamics, linguistic and genetic data in British history, and phonological space organization. The Cultural Evolution of Language Lab, which Roberts founded and directs, conducts cutting-edge research using experimental semiotics methodologies. Current projects examine how social factors influence language change, the emergence of linguistic structure through communication, and the interaction between iconicity and combinatoriality in communication systems.

• Language Evolution
• Language Change
• Language Variation
• +۷ مورد دیگر

Bernhard J. Berger is a Lecturer in the Department of Computer Engineering at the Institute of Embedded Systems, Hamburg University of Technology (TUHH). His research focuses on software security, static code analysis, machine learning, optimization, and research data management. He has held significant roles such as Program Committee member for ICPC 2025 and MSR 2025, and has received awards including the Best Reviewer Award (ICPC 2023) and Best Engineering Paper Award (SCAM 2019). His work spans interdisciplinary applications including maritime systems security, GPU-accelerated AI, and evolutionary algorithms. Recent studies emphasize AI-driven security tools (e.g., ML-SAST) and domain-specific language approaches to optimization (EvoAl). He has contributed to over 30 peer-reviewed publications, with notable work in IEEE Transactions on Software Engineering and Science of Computer Programming. Berger collaborates closely with industry through DAAD review committees and serves on artifact evaluation boards for ISSTA and ARES conferences. Education: Doctoral Thesis (2022), Diploma in Computer Science (2007) Key Projects: ArchSec tool suite, Threat Modeling Frameworks, Bauhaus static analysis methodology Lab Affiliation: Embedded Systems Design Group His advisory roles include Deputy of TUHH's Election Verification Committee and Session Chair at IEEE Congress on Evolutionary Computation 2023. Current research trends integrate machine learning with static analysis for automated vulnerability detection, while also exploring explainable AI techniques for neural network optimization.

• Software Security
• Static Code Analysis
• Machine Learning
• +۴ مورد دیگر

Dr. Vakil Takhaveev is a Lecturer at ETH Zurich's Department of Health Sciences and Technology, within the Institute of Food, Nutrition and Health. His research focuses on DNA damage mechanisms, aging, cancer, and neurodegeneration, with particular emphasis on developing novel DNA-damage-sequencing methods like click-code-seq and TRABI-Seq . He investigates anticancer drug action (e.g., trabectedin), aging clocks using DNA oxidation profiling, and stress-induced carcinogenesis. His work integrates multi-omics approaches and advanced sequencing techniques. Research Directions: Novel DNA-Damage-Sequencing Methods: Developed click-code-seq and TRABI-Seq for genomic mapping of DNA lesions and repair dynamics. Anticancer Drug Action: Explored mechanisms of trabectedin and other chemotherapeutics, linking DNA repair vulnerabilities to therapy resistance. Aging Clocks: Created DNA oxidation-based biomarkers for biological aging using genome-wide profiling in human and mouse models. Stress-Induced Pathologies: Studies metabolic and DNA damage links to early tumorigenesis and neurodegeneration. Awards & Recognition: 2025 Public Award Winner in PIs of Tomorrow competition 2024 ETH Zurich Career Seed Award Best presentation awards (Swiss Chemical Society, American Chemical Society) Grants & Collaborations: Impetus grants for aging clock development Swiss Chemical Society and American Chemical Society fellowships Labs & Teams: Leads research on DNA damage and aging mechanisms at ETH Zurich, collaborating with international groups in oncology and toxicology.

• DNA Damage and Repair
• Aging Mechanisms
• Cancer Biology
• +۶ مورد دیگر

Shasha Chong is an Assistant Professor of Chemistry at the California Institute of Technology and a Ronald and JoAnne Willens Scholar. She earned her B.S. from the University of Science & Technology of China (2008) and Ph.D. from Harvard University (2014). Her research bridges chemistry, physics, and biology to investigate the molecular mechanisms of cellular processes, focusing on intrinsically disordered regions (IDRs) in transcription proteins. Research Focus: IDRs in transcriptional regulation, cancer biology, liquid-liquid phase separation, and single-molecule imaging techniques. Grants & Awards: CCE Innovation Award (2024), ALSF Innovation Grant, Mallinckrodt Research Grant, Margaret E. Early Medical Research Trust Grant. Collaborations: Caltech-City of Hope Biomedical Research Initiative Grant (2025). Teaching: Co-instructor for courses like Biochemistry Laboratory (Ch 11) and Advanced Topics in Biochemistry (BMB/Bi/Ch 174). Labs & Teams: Leads the Chong Laboratory at Caltech, focusing on interdisciplinary approaches combining single-molecule imaging, genome editing, and bioinformatics.

• Transcriptional Regulation
• Intrinsically Disordered Proteins
• Single-Molecule Biophysics
• +۴ مورد دیگر

Manuel R. Amieva is a Professor at Stanford University School of Medicine , holding joint appointments in Pediatrics - Infectious Diseases and Microbiology & Immunology . He is also a member of the Maternal & Child Health Research Institute (MCHRI) . His clinical practice at Stanford Medicine Children's Health focuses on pediatric infectious diseases. Education: Medical Education: Stanford University School of Medicine (1997) Fellowship: Stanford University Pediatric Infectious Disease Fellowship (2004) Internship & Residency: Stanford Health Care at Lucile Packard Children's Hospital (1998-1999) Dr. Amieva's research investigates host-pathogen interactions at epithelial barriers, with specific expertise in Helicobacter pylori , Listeria monocytogenes , Salmonella enterica , and Staphylococcus aureus . His lab develops innovative organoid culture systems with controlled polarity to study microbial colonization and oncogenic mechanisms. Key discoveries include: H. pylori's manipulation of epithelial junctions via the CagA protein Listeria's exploitation of cell extrusion sites for invasion Staphylococcus toxin interactions with adherens junctions Gastric stem cell activation by pathogens Recent publication trends show continued leadership in infectious disease mechanisms (2020-2025), with a focus on: Pathogen-specific epithelial breach strategies Organoid modeling of viral/bacterial interactions Redox-dependent host factor regulation Single-cell spatial transcriptomic analyses Multi-institutional educational frameworks His scientific collaborations span disciplines including: Gastric cancer genomics initiatives COVID-19 lung infection models Stem cell-microbe interactions Medical education reform projects Dr. Amieva maintains active clinical research while mentoring students in both the Microbiology & Immunology and Pediatrics programs. His lab at Stanford employs advanced 3D confocal microscopy and organ-on-a-chip technologies to visualize epithelial colonization dynamics.

• Microbiology
• Infectious Diseases
• Cell Biology
• +۷ مورد دیگر

Rotem Karni, PhD, is an Associate Professor of Genetics at the Perelman School of Medicine, University of Pennsylvania, Philadelphia. He leads a research lab focused on understanding how alternative RNA splicing contributes to cancer and genetic diseases, with a strong emphasis on translating these findings into RNA-based therapies. Karni's lab develops decoy oligonucleotides, small molecules, and splice-switching technologies to modulate splicing factors and enhance immunotherapy. Education BSc in Biological Chemistry from The Hebrew University of Jerusalem (1997) PhD in Biological Chemistry from The Hebrew University of Jerusalem, Israel (2002) Postdoctoral Fellowship at Cold Spring Harbor Laboratory, NY (2002-2007) Karni's research explores the deregulation of alternative splicing in oncogenesis, particularly how splicing factors like RBFOX2 and S6K1 influence metastasis, DNA repair, and immune checkpoint modulation. His team investigates m6A RNA modifications for stabilizing mutant genes, with applications in Duchenne Muscular Dystrophy and pancreatic cancer. The lab's work is commercialized through biotech companies: SKIP Therapeutics, Andlit Therapeutics, and RNAble. Selected Research Trends RNA mis-splicing and neoantigen generation (2025) Splicing factor inhibition for tumor suppression (2023) Metastatic splicing signatures in pancreatic cancer (2023) Immune checkpoint splicing in cancer immunotherapy (2021) m6A modulation for mRNA stabilization (2023) Advising & Collaborations Karni has mentored numerous PhD and postdoctoral researchers, many of whom now hold leadership roles in academia, biotech, and medical institutions globally. His lab collaborates extensively on projects involving RNA innovation, including partnerships with the Institute for RNA Innovation. Contact Department of Genetics & Institute for RNA Innovation, One uCity Square, Room 4018, Philadelphia, PA 19104 Phone: 215-898-5072 Email: Rotem.Karni@Upenn.edu

• Alternative RNA Splicing
• RNA Biology
• Cancer Therapy
• +۴ مورد دیگر

Prof. Waldemar Kolanus leads the Molecular Immunology and Cell Biology department at the University of Bonn's Life & Medical Sciences Institute (LIMES) . His research bridges immunoregulation , stem cell dynamics , and metabolic stress responses in immune cells. Unit 2 member at LIMES Principal investigator in SFB 704 and ImmunoSensation Cluster Leads a multidisciplinary lab with postdocs, PhD students, and technical staff His work focuses on intracellular signaling pathways connecting immune activation to tissue homeostasis, particularly through: Cytohesin proteins in integrin-mediated adhesion and migration TRIM71 in stem cell regulation and congenital hydrocephalus High-salt environments affecting macrophage function Publication trends show expertise in immune cell migration , genetic models , and chemical inhibition , with frequent use of mice and zebrafish for in vivo studies. Key articles explore: TRIM71's dual role in auditory development and germ cell maintenance Cytohesin family's Golgi regulation and insulin signaling Ruxolitinib's off-target migration inhibition of dendritic cells Contact details: Address: LIMES Institute, Carl-Troll-Straße 31, Bonn Email: kolanus.sekretariat@uni-bonn.de Phone: +49 228 73-62788

• Molecular Immunology
• Cell Signaling
• Signal Transduction Pathways
• +۴ مورد دیگر

Leslie Ann Goldberg is a Senior Research Fellow at St Edmund Hall and Professor of Computer Science at the University of Oxford. She currently serves as Head of the Department of Computer Science (on sabbatical 2025-26) and focuses on foundational problems in Algorithms and Complexity Theory , particularly randomised algorithms for network communication, machine learning, and statistical physics models. Her research includes solving Aldous' 1987 conjecture on backoff protocol instability (with John Lapinskas), developing rigorous mathematical analysis frameworks for algorithmic efficiency, and advancing approximate counting techniques via Markov Chain Monte Carlo methods (with Andreas Galanis and collaborators). Key projects involve graph homomorphisms , Moran process dynamics , and #BIS complexity class analysis. Recent publications (2023-2024) span topics like Sybil defense mechanisms, low-temperature sampling on random graphs, and parameterised subgraph counting modulo 2. Her work demonstrates cross-disciplinary impact in computational biology, statistical physics, and database theory. Scientific Awards include Best Paper Prizes at ICALP 2016, ICALP 2010, and IPEC 2017. She supervises PhD student Paulina Smolarova and collaborates extensively with researchers in Oxford and beyond.

• Algorithms
• Complexity Theory
• Randomised Algorithms
• +۵ مورد دیگر

Juan Zhai is an Assistant Professor in the Manning College of Information and Computer Sciences (CICS) at the University of Massachusetts Amherst. She co-directs the Laboratory for Advanced Software Engineering Research (LASER) and is a member of the UMass NLP group. Her research advances software engineering through automated techniques for building high-quality systems with emphasis on behavioral specifications, AI safety, and trustworthy AI. Her work addresses the fundamental challenge of aligning software behavior with intended specifications through two main directions: automated specification synthesis (translating natural language comments to formal specifications via tools like C2S and LLMCup) and defect detection/repair (developing frameworks for AI system testing, bias mitigation, and training diagnostics). Her vision integrates these into end-to-end assurance systems that continuously validate, repair, and audit evolving software in dynamic environments. Recent publications (2024-2025) reveal dominant trends at the software engineering/AI intersection: formal specification synthesis for IoT and code generation, comment maintenance using LLMs, deep learning framework testing (DevMuT, Citadel), bias detection in LLMs, and automated training repair (AutoTrainer, DREAM). These contributions appear in top venues including ICSE, FSE, ASE, ISSTA, and ACL. Professor Zhai currently advises PhD student Gehao Zhang (focusing on Software Engineering and AI Safety) and actively recruits new PhD/Master's students. Her LASER lab develops practical tools for specification inference, LLM-driven synthesis, and trustworthy AI, while collaborating with the UMass NLP group on language-centric software analysis. The LASER lab, co-directed by Zhai, pioneers techniques for behavioral specification enforcement across traditional and AI-powered systems. Key projects include CPC for bidirectional code-comment analysis, ModelMeta for deep learning framework testing, and frameworks for bias mitigation across the ML lifecycle. The lab emphasizes practical, scalable tools that enhance correctness, robustness, and fairness in critical AI applications.

• Software Engineering
• Program Languages
• Natural Language Processing
• +۶ مورد دیگر

Jennifer L. Clarke is a Professor in the Department of Statistics at the University of Nebraska–Lincoln and Director of the Quantitative Life Science Initiative. She holds leadership roles in enabling big data integration across the University of Nebraska system through collaborative research programs. Her affiliations include the Institute of Agriculture and Natural Resources (IANR) and the College of Agriculture and Natural Resources. Dr. Clarke's research focuses on statistical methodology for high-dimensional data, computational biology, bioinformatics, and bacterial genomics. Her work bridges statistical innovation with applications in oncology, microbiome analysis, and agricultural phenomics. Key areas include predictive modeling, machine learning, and genomic/metagenomic data integration. Her recent publications span cancer biomarker discovery, plant phenotyping methodologies, and microbial community analysis, reflecting her interdisciplinary approach. Articles emphasize translational applications like therapeutic target identification and precision agriculture. Dr. Clarke leads initiatives fostering collaboration between statisticians and domain scientists, including the Quantitative Life Science Initiative and contributions to the Agricultural Genome-to-Phenome Initiative (AG2PI). Her work advances data-driven solutions for healthcare and food security challenges. Notable projects include developing statistical tools for microbiome studies, analyzing root architecture via 3D imaging, and investigating cranberry-derived compounds' cancer-inhibitory mechanisms. Her methodological contributions include hybrid clustering techniques and predictive model validation frameworks.

• Statistical Methodology
• Bioinformatics/Computational Biology
• Data Mining/Machine Learning
• +۳ مورد دیگر

Alexandros G. Dimakis is a Professor at the University of California, Berkeley's Department of Electrical Engineering and Computer Sciences (EECS), College of Engineering. He is also Co-Director of the National AI Institute for Foundations of Machine Learning and Co-Founder of BespokeLabs.ai. PhD (2008) and Diploma (2003) in Electrical Engineering His research focuses on Generative AI , Information Theory , and Machine Learning . Recent work includes advancements in diffusion models, compressed sensing, and causal inference. His publications (150+) emphasize inverse problems, neural network verification, and generative model optimization. Recent publications highlight trends in Diffusion Models for inverse problems, Language Model Scaling , and 3D-Aware Generative Systems . Collaborative projects span biomedical applications, large-scale dataset curation (Datacomp-LM), and parameter-efficient model fine-tuning. Scientific Awards : IEEE Fellow (2022) James Massey Award (2018) NSF CAREER Award (2011) Google Research Faculty Award Best Paper awards at UAI workshops Eli Jury Dissertation Award (UC Berkeley) He advises PhD students in generative modeling, compressed sensing, and information theory. His research group collaborates with institutions like MIT, NYU, and IBM Research. Former students hold positions at Google, Amazon, and academic institutions like Purdue University.

• Generative AI
• Information Theory
• Machine Learning
• +۴ مورد دیگر

Thomas Bäck is a Professor at the Leiden Institute of Advanced Computer Science (LIACS) , Leiden University , Netherlands, and a member of the interdisciplinary programme Society, Artificial Intelligence and Life Sciences (SAILS) . His academic career spans roles at Leiden University (1996–present) and leadership positions at the Center for Applied Systems Analysis in Dortmund (1994–2000). Education : Diplom-Informatiker (Computer Science), Technische Universität Dortmund (1990) Dr. rer. nat. (Computer Science), Technische Universität Dortmund (1994) Research Interests : Dr. Bäck specializes in evolutionary computation , machine learning , and their applications in sustainable smart industry and healthcare . Recent work focuses on integrating large language models (LLMs) and quantum computing into optimization frameworks, with projects like CIMPLO (predictive maintenance), ECOLE (experience-based optimization), and SAPPAO (airline operations optimization). Scientific Contributions : His 526+ publications cover evolutionary algorithms, quantum optimization, and LLM-driven design, with recent trends including: Quantum computing (e.g., quantum approximate optimization, quantum advantage challenges) LLM integration (e.g., hyperparameter tuning, mutation control, code evolution graphs) Healthcare and industry (e.g., predictive maintenance, anomaly detection, melt quality prediction) Algorithm benchmarking (e.g., IOHprofiler, MA-BBOB, explainable benchmarking) Scientific Awards : IEEE Fellow (2022) Royal Netherlands Academy of Arts and Sciences (KNAW) member (2021) Academia Europaea member (2022) IEEE Computational Intelligence Society Evolutionary Computation Pioneer Award (2015) Fellow, International Society of Genetic and Evolutionary Computation (2003) Best Ph.D. thesis award, German Society of Computer Science (GI) (1995) Advising and Grants : He supervises Ph.D. candidates in evolutionary computation and machine learning and has secured 7 major grants from organizations like the Dutch Research Council , European Commission , and The Research Council of Norway . His editorial roles include Editor-in-Chief of the Evolutionary Computation Journal and associate editorships in leading AI journals.

• Evolutionary Computation
• Machine Learning
• Natural Computing
• +۵ مورد دیگر

Brian Hie is an Assistant Professor of Chemical Engineering at Stanford University , a Dieter Schwarz Foundation Stanford Data Science Faculty Fellow , and an Innovation Investigator at Arc Institute . He leads the Laboratory of Evolutionary Design , focusing on the intersection of biology and machine learning . His prior roles include a Stanford Science Fellow in the Stanford University School of Medicine and a Visiting Researcher at Meta AI . Education: Ph.D. , Electrical Engineering and Computer Science , Massachusetts Institute of Technology (2021) Bachelor’s Degree , Stanford University Research Interests: Brian’s work bridges machine learning and computational biology , with a focus on protein engineering , single-cell RNA sequencing , and viral evolution . His Evolutionary velocity framework predicts protein evolutionary dynamics across timescales, while his Scanorama algorithm enables efficient integration of heterogeneous single-cell datasets. He also develops structure-informed language models for antibody optimization and uncertainty-aware ML for biological discovery. Publication Trends: His recent work (2023) emphasizes structure-based inverse folding for antibody evolution, evolutionary scale modeling , and unsupervised optimization . Earlier studies (2022-2021) cover evolutionary velocity , multi-modal single-cell analysis , and viral escape prediction using natural language analogies. Scientific Awards: Stanford Science Fellow (2021) National Defense Science and Engineering Graduate Fellowship (2019) Advising: He mentors doctoral students including Brandon Ameglio , Garyk Brixi , and Chang M. Yun , with a focus on biological design and computational methods . Labs & Collaborations: His lab collaborates with Bio-X and the Institute for Human-Centered Artificial Intelligence (HAI) , and he maintains affiliations with Sarafan ChEM-H and Stanford Data Science .

• Machine Learning
• Computational Biology
• Protein Engineering
• +۶ مورد دیگر