جستجوی استاد راهنمای دانشگاهی

Hongtu Zhuمشاهده پروفایل

استاد

• Biostatistics
• Medical Image Analysis
• Precision Medicine
• +۴ مورد دیگر

Dr. Hongtu Zhu is the Kenan Distinguished Professor of Biostatistics, Statistics, Radiology, Computer Science, and Genetics at the University of North Carolina at Chapel Hill (UNC). He holds affiliations with the Gillings School of Global Public Health and leads the Biostatistics and Imaging Genomics Analysis Lab. His expertise spans statistical learning, medical imaging, AI, and big data integration, with a focus on precision medicine and biomedicine. Dr. Zhu earned his PhD in Statistics from The Chinese University of Hong Kong (2000) and has held prior roles including DiDi Fellow/Chief Scientist (2018-2020) and Bao-Shan Jing Endowed Professor at MD Anderson Cancer Center (2016-2018). He has published over 345 peer-reviewed articles in top-tier journals like Nature, Science, and JASA, and actively contributes to editorial roles including Coordinating Editor of JASA. His research interests include neuroimaging analysis, knowledge graphs, and AI applications in healthcare. Notable awards include the COPSS Snedecor Award (2025), IEEE Fellowship (2025), and IMS Medallion (2027). He has mentored over 80 PhD students/postdoctoral fellows and serves on NIH grant review panels and professional organizations like the ASA's Section on Statistics in Imaging. Key Contributions: Imaging genomics, brain connectivity studies, ridesharing market optimization, medical AI frameworks Lab Innovations: Brain Imaging Genetics Knowledge Portal, Biomedical Knowledge Graph Interface Teaching: Advanced biostatistics courses (Generalized Linear Models, Deep Learning in Biomedicine) Recent work explores causal inference in healthcare, X chromosome's role in neurobiology, and AI ethics in medical vision-language models. His interdisciplinary projects bridge statistics, computer science, and clinical practice to address complex biomedical challenges.

• Evolutionary Computation
• Machine Learning
• Natural Computing
• +۵ مورد دیگر

Thomas Bäck is a Professor at the Leiden Institute of Advanced Computer Science (LIACS) , Leiden University , Netherlands, and a member of the interdisciplinary programme Society, Artificial Intelligence and Life Sciences (SAILS) . His academic career spans roles at Leiden University (1996–present) and leadership positions at the Center for Applied Systems Analysis in Dortmund (1994–2000). Education : Diplom-Informatiker (Computer Science), Technische Universität Dortmund (1990) Dr. rer. nat. (Computer Science), Technische Universität Dortmund (1994) Research Interests : Dr. Bäck specializes in evolutionary computation , machine learning , and their applications in sustainable smart industry and healthcare . Recent work focuses on integrating large language models (LLMs) and quantum computing into optimization frameworks, with projects like CIMPLO (predictive maintenance), ECOLE (experience-based optimization), and SAPPAO (airline operations optimization). Scientific Contributions : His 526+ publications cover evolutionary algorithms, quantum optimization, and LLM-driven design, with recent trends including: Quantum computing (e.g., quantum approximate optimization, quantum advantage challenges) LLM integration (e.g., hyperparameter tuning, mutation control, code evolution graphs) Healthcare and industry (e.g., predictive maintenance, anomaly detection, melt quality prediction) Algorithm benchmarking (e.g., IOHprofiler, MA-BBOB, explainable benchmarking) Scientific Awards : IEEE Fellow (2022) Royal Netherlands Academy of Arts and Sciences (KNAW) member (2021) Academia Europaea member (2022) IEEE Computational Intelligence Society Evolutionary Computation Pioneer Award (2015) Fellow, International Society of Genetic and Evolutionary Computation (2003) Best Ph.D. thesis award, German Society of Computer Science (GI) (1995) Advising and Grants : He supervises Ph.D. candidates in evolutionary computation and machine learning and has secured 7 major grants from organizations like the Dutch Research Council , European Commission , and The Research Council of Norway . His editorial roles include Editor-in-Chief of the Evolutionary Computation Journal and associate editorships in leading AI journals.

Dieter Braunمشاهده پروفایل

استاد

• Origins of Life
• Prebiotic Chemistry
• Molecular Evolution
• +۵ مورد دیگر

Dieter Braun is a Professor in the Faculty of Physics at Ludwig Maximilian University of Munich (LMU), leading the Functional NanoSystems research group. He serves as speaker of the CRC 235 Emergence of Life and coordinates the Molecular Origins component of the Origins Cluster. Dr. Braun holds an ERC Synergy Grant (starting April 2025), leads the CRC 392 Molecular Evolution (starting April 2024), and is a Fellow in the Max Planck School Matter to Life (since October 2023). His research focuses on understanding the physical mechanisms that could have led to the emergence of Darwinian evolution from prebiotic molecules on early Earth. Braun's laboratory investigates non-equilibrium settings, particularly asymmetrically heated open cracks in rocks, which create intricate wet-dry cycles, temperature gradients, and fluidic effects that could drive molecular evolution. His work bridges physics, chemistry, and biology to explore how dead molecules might combine through physical forces into autonomous mechanisms of evolution. Analysis of Braun's recent publications reveals a strong focus on thermal gradients and non-equilibrium physics in prebiotic environments. His research demonstrates how heat flows can concentrate molecules, drive polymerization, create pH gradients, and enable non-enzymatic replication of nucleic acids. The publications span high-impact journals including Nature, Nature Physics, and Nature Chemistry, showing interdisciplinary work connecting physics, chemistry, geology, and biology in the context of life's origins. Klung-Wilhelmy Weberbank Price (2011) Technology Transfer Price of the DPG (with LMU and NanoTemper) Deutscher Innovationspreis (2012) Step Award (2012) Dr. Braun has successfully mentored numerous PhD students, including Stefan Duhr and Philipp Baaske who founded the award-winning startup NanoTemper Technologies. His research is supported by multiple prestigious grants including ERC Starting, Advanced, and Synergy Grants, as well as funding from the Simons Collaboration on the Origins of Life. His laboratory collaborates extensively with other researchers across disciplines and institutions, particularly with Hannes Mutschler in the new ERC Synergy project. The Braun laboratory operates within the CRC 235 Emergence of Life and the Origins Cluster at LMU Munich, with strong connections to the Max Planck Society through the Max Planck School Matter to Life. The research group maintains active collaborations with geochemists, biophysicists, and molecular biologists to create comprehensive experimental models of prebiotic environments.

Westley Weimerمشاهده پروفایل

استاد

• Automated Program Repair
• Software Engineering
• Programming Languages
• +۱۸ مورد دیگر

Westley Weimer is a Professor in the Department of Electrical Engineering and Computer Science (EECS) at the University of Michigan, College of Engineering. He teaches advanced courses such as EECS 590 (Advanced Programming Languages) and EECS 481 (Software Engineering), and has previously taught at the University of Virginia. His research integrates software engineering, programming languages, and cognitive science, focusing on automated program repair, program analysis, and the neuroscience of code comprehension. University: University of Michigan School: College of Engineering Department: Department of Electrical Engineering and Computer Science Academic Rank: Professor His research interests include automated program repair (e.g., GenProg), software quality, cognitive modeling of programming, neuroimaging studies of code review, and the application of medical imaging to software engineering. He explores deep questions at the intersection of consciousness, time, and computation, advocating for interdisciplinary approaches to understanding the mind through programming behavior. The most recent publications reflect a trend toward empirical and cognitive studies in software engineering, combining automated repair with human factors, neuroimaging (fMRI, TMS), and real-world software challenges. Themes include bias in code review, programming under cognitive influences, and the neurological basis of code comprehension. His work increasingly bridges computer science with psychology, neuroscience, and social science. Scientific awards include multiple Distinguished Paper Awards at ICSE, FSE, and ESEC/FSE, Best Paper and Runner-up awards, and several 10-Year Most Influential Paper Awards from ASE, GECCO, POPL, and ASPLOS, recognizing the lasting impact of his contributions to automated software repair and program analysis. He has advised numerous PhD and Master’s students, many of whom have gone on to faculty positions or industry research roles. He contributes to academic service through organizing diversity and inclusion initiatives, maintaining graduate career resources, and promoting ethical and inclusive practices in computing. He leads a vibrant research group focused on improving software quality through both technical and human-centered innovations, with ongoing projects in automated repair, cognitive modeling, and secure systems.

Michael Baymمشاهده پروفایل

دانشیار

• Microbial Evolutionary Genomics
• Antibiotic Resistance
• Computational Biology
• +۷ مورد دیگر

Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .

• Anthropological Genomics
• Paleogenomics
• Human Body Size Evolution
• +۷ مورد دیگر

George Perry is a Professor of Anthropology at Pennsylvania State University, with research intersections in Biology, Evolutionary Medicine, and Genomics. He is affiliated with the Huck Institutes' Center for Infectious Disease Dynamics, Ecology, Molecular Cellular and Integrative Biosciences, and Bioinformatics and Genomics programs. Perry directs the Anthropological Genomics Lab , focusing on paleogenomics and evolutionary adaptation. Research areas: anthropological genomics, parasite evolution, human body size transitions, and evolutionary medicine Key collaborations: international teams in Madagascar, Europe, and Africa Leadership: Bioinformatics and Genomics Chair (2019–2023) His 2025–2022 publications span evolutionary responses to invasive species, human migration health impacts, chemosensory gene adaptation, and primate genomic diversity. Notable methodological contributions include ancient DNA recovery and comparative paleogenomics. Perry advises graduate students like Vanessa Garcia and Annette Mercedes, with grants including NIH support for Cuban health disparity studies. Scientific leadership includes tenure-line promotions (2023) and NASA Space Grant collaborations.

Lin Heمشاهده پروفایل

استاد

• Non-coding RNA Research
• Cancer Biology
• Stem Cell Biology
• +۳ مورد دیگر

Lin He is the Thomas and Stacey Siebel Distinguished Chair in Stem Cell Research and Professor of Cell Biology and Physiology at the University of California, Berkeley. His laboratory focuses on understanding the biological functions of non-coding RNAs in development and disease, with particular emphasis on microRNAs (miRNAs) in cancer, stem cell biology, and developmental processes. He developed the CRISPR-EZ method for highly efficient mouse genome editing, significantly advancing genetic research. Research interests include miRNAs' roles in tumor progression, metastasis, and pluripotency regulation in stem cells. His work bridges mouse genetics, genomics, and molecular biology to uncover mechanisms governing non-coding RNA functions. Current projects address miRNAs in oncogenesis, stem cell fate determination, and the interplay between non-coding RNAs and retrotransposons in development. Key contributions include identifying miRNA networks in cancer pathways, demonstrating miRNA requirements for ciliogenesis and lung development, and advancing CRISPR-based genome editing techniques. His interdisciplinary approach integrates genetic, genomic, and cellular tools to explore fundamental questions in biology and medicine. Lab website: helabucb.org CRISPR-EZ technology enables 100% genome editing efficiency in mouse zygotes Pioneering studies on miRNA regulation of PTEN, p53, and oncogene pathways

Pekka Marttinenمشاهده پروفایل

دانشیار

• Machine Learning
• Large Language Models
• Reinforcement Learning
• +۸ مورد دیگر

Pekka Marttinen is a tenured Associate Professor of Machine Learning at Aalto University, Department of Computer Science, and leads the Machine Learning for Health (Aalto-ML4H) group within the Helsinki Institute for Information Technology HIIT. Education: M.Sc. in Applied Mathematics, University of Helsinki (2004) Ph.D. in Statistics, University of Helsinki (2008) Title of Docent in Information and Computer Science, Aalto University (2015) Research Focus: His methodological work spans large language models, reinforcement learning, deep learning, probabilistic machine learning, and causal inference . These techniques are applied to critical domains of healthcare, bioinformatics, statistical genetics, epidemiology, and personalized medicine . The group develops novel algorithms, theoretical guarantees, and open-source software that enable data-driven discovery and decision-making in medicine and biology. Publication Trends: Across 2022-2024 the lab has concentrated on (i) rigorous causal reasoning over temporal clinical data, (ii) principled uncertainty quantification in LLMs, (iii) representation learning for neural network comparison, and (iv) translational projects that turn raw EHRs into actionable clinical insights. Earlier work integrated high-dimensional genomics with metabolomics and mapped evolutionary forces in bacterial pathogens. Scientific Awards & Recognition: While no specific awards are listed, his sustained publication record in top-tier venues (NeurIPS, ICML, AISTATS, Nature Genetics, PLOS CB) and his role as responsible professor of the Machine-Learning, Data-Science and AI major signify significant peer recognition. Advising & Grants: Prof. Marttinen currently mentors 8 PhD students as primary supervisor and an additional 7 PhD students as co-supervisor. He has already graduated 8 PhDs since 2014. The group is supported through competitive funding including the Finnish Center for Artificial Intelligence (FCAI) doctoral program. Labs & Teams: He directs the Machine Learning for Health (Aalto-ML4H) research group, comprising postdocs Hans Moen, Ti John, Alexander Nikitin, Negar Safinianaini, Linli Zhang, Zhiyuan Li, and the above-mentioned PhD cohort.

Una-May O'Reillyمشاهده پروفایل

استاد پژوهش

• Cybersecurity
• Artificial Intelligence
• Machine Learning
• +۶ مورد دیگر

Una-May O'Reilly is a Principal Research Scientist at MIT's Computer Science and Artificial Intelligence Laboratory (CSAIL), leading the ALFA group. She holds a PhD in Computer Science from Carleton University (1995), with prior roles including a postdoctoral appointment at MIT's Artificial Intelligence Laboratory. Her research focuses on cybersecurity, adversarial AI, software security, and disinformation dynamics, applying evolutionary algorithms and machine learning to address arms races in cyber defense and societal challenges like climate change communication. Education: B.Sc., University of Calgary M.C.S., Carleton University Ph.D., Carleton University (1995) Research Interests: Adversarial machine learning for secure systems Coevolutionary algorithms in cybersecurity and healthcare Program comprehension via neuroscience and AI Climate disinformation mitigation on social media Large language model applications in code synthesis and threat hunting Key Projects: Adversarial Cyber Security : Modeling cyber attack-defense arms races GIGABEATS : AI-driven medical sensor data analysis for critical care MOOC Learner Project : Data science for online education insights Awards: EvoStar Award (2013) for contributions to evolutionary computation Fellow of ACM Sig-EVO Leadership & Service: Co-founder and Vice-Chair of ACM Sig-EVO Former Chair of GECCO (2005), major evolutionary computation conference Editorial roles in Evolutionary Computation and Genetic Programming and Evolvable Machines Labs & Groups: Leads the AnyScale Learning for All (ALFA) group at CSAIL, focusing on scalable AI for cybersecurity, healthcare, and education.

Gabriele Schweikertمشاهده پروفایل

مدرس ارشد

• Computational Biology
• Machine Learning
• Epigenetics
• +۶ مورد دیگر

Dr. Gabriele Schweikert is a Senior Lecturer and Principal Investigator with a joint appointment between the Division of Computational Biology in the School of Life Sciences at University of Dundee and Cyber Valley in Tuebingen. Her research focuses on applying machine learning techniques to understand epigenetic mechanisms and molecular processes in living cells. Dr. Schweikert completed her PhD at the Max Planck Institute Tuebingen working with Schoelkopf, Weigel, and Raetsch labs on machine learning for computational gene finding. She subsequently joined Adrian Bird's lab at the Wellcome Trust Center for Cell Biology in Edinburgh, a pioneer in epigenomic research. Prior to her current position, she held prestigious Marie Curie and EMBO Fellowships at the School of Informatics, University of Edinburgh. Her research interests center on using machine learning to decode epigenetic mechanisms that determine cellular identity and function. She investigates how cells with identical DNA can differentiate into specialized cell types through epigenetic regulation, with particular focus on applications in understanding tumorigenesis where epigenetic machinery malfunctions. Her work combines high-throughput epigenomic data with advanced computational approaches to address complex biological questions. Analysis of her recent publications reveals a strong focus on epigenomic data analysis, machine learning applications in biology, and computational approaches to understanding gene regulation. Her work spans from fundamental epigenetic mechanisms to practical applications in disease research, with growing emphasis on individual-specific epigenomic analysis and explainable AI in biomedical contexts. UKRI Future Leaders Fellowship (2020, £1.6 million) Marie Curie Fellowship EMBO Fellowship Dr. Schweikert actively supervises PhD students and has received significant research funding for projects including 'Machine Learning Methods to Re-Annotate Histone Modifications,' 'Unlocking The Alternative Splicing Code,' and 'GPU-Based Machine Learning System For Fundamental Biological Research.' She is involved in multiple interdisciplinary collaborations and frequently presents her work at major conferences including ELLIS Health program retreat, Epigenetics Meetings, and RECOMB workshops. She maintains active research laboratories in both Dundee and Tuebingen, fostering international collaboration between computational biologists, machine learning experts, and experimental biologists to advance our understanding of epigenetic regulation in health and disease.

Kathrin Langمشاهده پروفایل

استاد

• Chemical Biology
• Protein Engineering
• Genetic Code Expansion
• +۳ مورد دیگر

Kathrin Lang is a Full Professor at the Department of Chemistry and Applied Biosciences, ETH Zurich, and Head of the Organic Chemistry Laboratory. Her research focuses on chemical biology, particularly the development of tools for genetic code expansion to incorporate non-canonical amino acids into proteins and advance bioorthogonal chemistries for studying biological processes. Keywords: Genetic Code Expansion, Bioorthogonal Chemistry, Protein Engineering, Ubiquitylation Networks, Post-Translational Modifications. Lang’s work emphasizes proximity-triggered crosslinking reactions, bioorthogonal labeling, and in vivo chemistries to address challenges in protein interaction mapping and structural elucidation. Her group’s recent publications highlight methodologies for dual protein labeling, deciphering ubiquitin code, and enhancing cycloaddition reactivity. Current projects include exploring cyclopropene-fused dibenzocyclooctynes for improved labeling and investigating methylated lysine as a conformational regulator in Hsp90. Funding sources include the ERC (Ubl-tool), DFG (SFB1035, SPP1926), and ETH Zurich. She contributes to education through courses like Genetic Code Expansion for Studying Posttranslational Modifications and Chemical Biology and Synthetic Biochemistry . Collaborative efforts span structural biology, microbiology, and synthetic biochemistry, with applications in ubiquitin research and cellular imaging.

Mathias Payerمشاهده پروفایل

دانشیار

• Software Security
• System Security
• Binary Exploitation
• +۳ مورد دیگر

Mathias Payer is an Associate Professor at EPFL's School of Computer and Communication Sciences (IC), leading the HexHive Laboratory . His work focuses on software security, particularly addressing memory corruption and type violations through binary analysis and compiler-based techniques. He contributes to research in secure system design, fault isolation, and fuzzing methodologies. Current PhD students : Di Bartolomeo Luca, Feng Zhiyao, Hofhammer Florian, Lyu Tao, Mao Philipp Yuxiang, Zhang Chibin, Zheng Han Past EPFL PhD students: Badoux Nicolas Daniel, Bhattacharyya Atri, Hazimeh Ahmad His research explores software security in areas like: Protecting applications from vulnerabilities Binary exploitation and mitigation Compiler-driven security hardening Strong sanitization and privilege separation Memory corruption detection The HexHive group develops tools and frameworks for: Automated fuzz driver generation Gradual compartmentalization State inference for feedback optimization Secure cell architectures Recent publications highlight advancements in: Fuzzing hybrid approaches (e.g., DUMPLING, MendelFuzz) Memory safety validation (QMSan, Pacmem) Compiler-assisted defenses (Gradient, Type++)

Max Alekseyevمشاهده پروفایل

دانشیار

• Computational Graph Theory
• Enumerative Combinatorics
• Computational/Algorithmic Biology
• +۱ مورد دیگر

Max Alekseyev is an Associate Professor in the Mathematics Department and Computational Biology Institute. His research spans computational graph theory, enumerative combinatorics, computational/algorithmic biology, and comparative genomics. He focuses on interdisciplinary problems, blending mathematics with biological applications, particularly in genome assembly and analysis. His work includes advancements in genome scaffolding algorithms, combinatorial sequence analysis, and mathematical biology. Notable contributions involve genome assembly tools like CAMSA and studies on ancestral genome reconstruction. He also explores theoretical topics such as Bernoulli series generalizations and modular data classification. His research trends highlight a blend of pure mathematics (e.g., number theory, graph theory) and applied computational methods, addressing challenges in genomics and evolutionary biology. He secured an NSF Student Travel Grant in 2018 for computational molecular biology.

• Bioinformatics
• Genomics
• Cancer Genomics
• +۷ مورد دیگر

Dr. Andre Kahles is a Lecturer in the Department of Computer Science at ETH Zürich, specializing in biomedical informatics. His research focuses on computational methods for analyzing large-scale genomic and transcriptomic data, with applications in cancer genomics, metagenomics, and precision medicine. He has contributed to the development of tools such as SplAdder for alternative splicing analysis, MetaGraph for petascale genomic data exploration, and SECEDO for subclone detection in cancer genomes. His work bridges algorithmic innovation with biological insights, addressing challenges in single-cell analysis, genome graph alignment, and multi-omics integration. Key research themes include: Developing scalable algorithms for processing nanopore sequencing and metagenomic data Characterizing somatic mutations and non-coding drivers in cancer genomes Advancing genome graph-based alignment and annotation methods Integrating multi-omics data for clinical decision-making and tumor profiling His publications span topics like RNA-seq analysis, chromothripsis in cancers, and global urban microbiome tracking through the MetaSUB consortium. Kahles has collaborated on landmark projects including the Pan-Cancer Analysis of Whole Genomes (PCAWG) and the Tumor Profiler Study.

Chen Ranمشاهده پروفایل

استادیار

• Interoceptive Processing
• Neurophysiology
• Brainstem Function
• +۵ مورد دیگر

Chen Ran, PhD, is an Assistant Professor in the Department of Neuroscience at Scripps Research in San Diego. His laboratory focuses on understanding how the brain processes internal sensory signals from visceral organs, such as hunger, satiety, nausea, and visceral pain. Using advanced techniques like in vivo two-photon calcium imaging, optogenetics, and circuit tracing, his team maps the functional architecture of brainstem circuits responsible for interoceptive processing. Key contributions include the discovery of a 'visceral homunculus' in the brainstem and the development of novel calcium indicators for high-resolution neuronal activity tracking. Education : PhD in Biology, Stanford University (2017) Bachelor of Science in Biology, Peking University (2011) Research Interests : Dr. Ran’s work integrates experimental and analytical approaches to decode how visceral stimuli are transduced into conscious sensations. Current projects investigate the coding logic of mechanical, chemical, and thermal signals from internal organs, with implications for developing therapies for obesity, diabetes, visceral pain, and eating disorders. The lab employs cutting-edge tools to visualize and manipulate neural circuits in awake behaving mice, linking circuit-level activity to physiological states. Awards & Honors : NARSAD Young Investigator Award (2022) NIH K01 Career Development Award (2023) Simons Collaboration on the Global Brain Award (2022) Harvard Brain Science Initiative Award (2021) Grants & Funding : Supported by NIH, Simons Foundation, and private philanthropy, his research bridges basic science and translational medicine. Current grants focus on brainstem circuit mapping and developing therapeutic targets for interoceptive disorders. Labs & Affiliations : Dr. Ran leads an interdisciplinary team at Scripps Research’s Neuroscience Department, collaborating with engineers, geneticists, and clinicians to advance interoceptive neuroscience.