جست‌وجوی استاد و پژوهشگر

• Plant Physiology
• Seed Biology
• Seed Germination
• +۵ مورد دیگر

Leonie Bentsink is a Professor at the Laboratory of Plant Physiology , part of Wageningen University . Her research focuses on molecular mechanisms underlying seed dormancy, germination, and longevity in plants like Arabidopsis thaliana . She leads projects investigating translational regulation, seed microbiomes, and abiotic stress tolerance, supported by an NWO Vici grant (2018). Dr. Bentsink supervises multiple PhD candidates and has authored over 69 publications. Key contributions include discovering roles for genes like DOG1 and ANAC060 in dormancy regulation, and developing tools like the SeedTransNet translational network. Key Projects: Seed microbiome impacts on drought tolerance Seed germination cell communication mechanisms Spatial transcriptomics for abiotic stress resilience Datasets: 11 publicly available datasets on seed transcriptomes/metabolomes, including seed dormancy cycling and parental effect studies. Citations: Over 70 publications since 2000, with notable work on seed longevity and translational regulation.

Katy D. Heathمشاهده پروفایل

استاد

• Microbiome and Microbial Communities
• Evolutionary Genetics
• Symbiosis and Mutualism Evolution
• +۳ مورد دیگر

Katy D. Heath is a Professor of Plant Biology and Affiliate Professor in Microbiology at the University of Illinois Urbana-Champaign (UIUC). She leads the Plant Biology department and is affiliated with the Carl R. Woese Institute for Genomic Biology. Her research focuses on the evolution of mutualisms, particularly plant-microbe interactions such as legume-rhizobium symbiosis, emphasizing genetic and ecological factors influencing symbiotic stability and adaptation. She investigates how environmental pressures (e.g., global change) shape mutualistic relationships and microbial community dynamics. Education: B.S. (2000) and Ph.D. (2007) from the University of Illinois and University of Minnesota, respectively, followed by postdoctoral work at the University of Toronto (2007–2009). Research Interests: Symbiosis evolution, microbial genetics, plasmid transmission dynamics, and the impacts of agricultural practices on rhizobia populations. She studies diverse systems, including Medicago-Sinorhizobium, soybean-Bradyrhizobium, and invasive legume-rhizobium interactions. Recent publications (2020–2025) highlight studies on endophyte impacts on soybean yield, rhizobia diversity under conventional farming, and genomic analyses of symbiotic coevolution. Her work integrates molecular biology, quantitative genetics, and ecology. Grants & Collaborations: Lead PI on a $12.5M NSF Biology Integration Institute (Genomics and Eco-evolution of Multi-scale Symbiosis). Her team includes collaborations with institutions like Indiana University and the University of Chicago. Labs & Teams: Heath Lab focuses on symbiosis research, with active projects on microbiome dynamics, plasmid-host coevolution, and community outreach (e.g., Boys and Girls Club collaborations). Recent lab highlights include student graduations (e.g., Ivan Sosa Marquez, Chase) and awards like the John R. Laughnan Award in Plant Biology.

• Behavioral Ecology
• Evolutionary Biology
• Population Ecology
• +۱۱ مورد دیگر

Prof. Dr. Oliver Krüger is a behavioral ecologist and evolutionary biologist at Bielefeld University 's Faculty of Biology , where he leads the Department of Animal Behaviour since 2013. His research spans avian and marine mammal systems, focusing on life history strategies, parasite-host interactions, and environmental adaptation. Education: Biology studies at Bielefeld University (1994-1996) MSc in Oxford (1996-1997) PhD at Bielefeld University with Fritz Trillmich and Jan Lindström (1998-2000) Research Themes: Behavioral ecology, evolutionary biology, and population dynamics across tropical and temperate ecosystems. Key projects include NC³ (Niche Choice/Construction) and studies on Galápagos sea lions, common buzzards, and pinniped species. Scientific Leadership: Spokesperson, SFB TRR 212 "NC³" (2018-2025) Advisory Board member: German Ornithologists Union, IUCN SSC pinniped group, German Primate Centre Peer review roles: Humboldt Foundation, DFG, HFSP, NSF Awards: Leopoldina Prize (2001) Niko Tinbergen Award (2008) DFG Heisenberg Professorship (2010-2015)

Michael Baymمشاهده پروفایل

دانشیار

• Microbial Evolutionary Genomics
• Antibiotic Resistance
• Computational Biology
• +۷ مورد دیگر

Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .

• Genomics
• Malaria Research
• Parasitology
• +۳ مورد دیگر

David Serre is a Professor in the Department of Microbiology and Immunology at the University of Maryland School of Medicine, with an additional appointment at the Institute for Genome Sciences. His research focuses on developing genomic approaches to study eukaryotic pathogens, particularly Plasmodium vivax, the leading cause of malaria outside Africa. His laboratory investigates parasite responses to antimalarial drugs, host immune responses, and mosquito vector biology using genomic and transcriptomic techniques. Education 1997–2000: Engineering degree in Chemistry, École Nationale Supérieure de Chimie, Montpellier, France 2000–2004: PhD in Biology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany 2004–2007: Postdoctoral fellowship, McGill University and Genome Quebec Innovation Centre, Montreal, Canada Research Focus Dr. Serre’s work integrates genomics to study Plasmodium vivax’s drug resistance, relapse mechanisms, and interactions with hosts and vectors. Key areas include: Genomic assays to characterize parasite drug responses Transcriptomic analysis of host immune responses Genomic studies of Anopheles mosquitoes as malaria vectors Recent Trends in Publications Recent work highlights genomic and transcriptomic approaches to dissect Plasmodium vivax biology, including: Single-cell RNA sequencing to resolve transcript isoforms and stage-specific expression Analysis of relapse dynamics and drug resistance mechanisms Microbiome studies in mosquitoes and environmental contexts Grants & Advising No explicit grants or advisee names are listed in the provided text. Collaborators include institutions like the Max Planck Institute, McGill University, and the Institute for Genome Sciences. Labs & Teams His lab is affiliated with the University of Maryland School of Medicine and the Institute for Genome Sciences, focusing on genomic and molecular approaches to infectious diseases.

Gary Brewerمشاهده پروفایل

استاد

• Field Crops Entomology
• Insect Ecology
• Insect Pest Management
• +۳ مورد دیگر

Dr. Gary Brewer is a Professor in the Department of Entomology at the University of Nebraska-Lincoln, with a 60% research and 40% teaching appointment. He has served as department head at NDSU (1997-2006) and UNL (2006-2018). His research focuses on field crops entomology, IPM of pasture cattle flies, salt creek tiger beetle conservation, and pollinator health. He has pioneered a push-pull strategy using coconut oil-derived repellents and led curriculum design for Rwanda’s Conservation Agriculture program. Education: B.S. in Zoology, University of Nebraska-Lincoln (1974) M.S. in Entomology, University of Nebraska-Lincoln (1978) Ph.D. in Entomology, Kansas State University (1984) Research Interests: Brewer’s work spans insect ecology, pest management, and conservation. Key areas include stable fly and horn fly control, pollinator protection, and endangered species recovery (e.g., Salt Creek tiger beetle). His lab develops natural product-based pest repellents and evaluates biopesticides for sustainable agriculture. Grants & Contributions: $362,150 USDA grant for undergraduate research in beneficial insect protection (2018) $325,000 USDA grant for multi-tactic stable fly control (2017) NE Game and Parks funded salt creek tiger beetle reintroduction programs Labs & Teams: Brewer’s team collaborates with industry (e.g., Vestergaard Frandsen) and international partners to advance IPM strategies. His work bridges field research with applied solutions for farmers and conservationists.

Pamela D. Robertsمشاهده پروفایل

استاد

• Sustainable Disease Management
• Plant Pathology
• Integrated Pest Management
• +۳ مورد دیگر

Dr. Pamela D. Roberts is a Professor of Plant Pathology and State Extension Specialist for Vegetable Pathology at the University of Florida's Southwest Florida Research and Education Center (SWFREC) in Immokalee, FL. She holds a B.Sc. in Horticultural Sciences from Kansas State University, an M.S. in Plant Pathology from the University of Hawaii, and a Ph.D. in Plant Pathology from the University of Florida. Her research focuses on sustainable disease management in vegetables and specialty crops, emphasizing integrated management strategies for bacterial and fungal-like pathogens. She leads the Florida Extension Plant Disease Diagnostic Laboratory at SWFREC, offering diagnostic services and disease management recommendations. Her extension programs include educational outreach on plant diseases and field demonstrations of integrated management techniques. Dr. Roberts has received prestigious awards such as the UF/IFAS Jim App Team Award and the Dallas Townsend Distinguished Extension Award. She serves as Editor-in-Chief of the American Phytopathological Society journal Plant Health Progress . Her work spans disease diagnosis, epidemiology, and pathogen evolution, with a strong emphasis on crops like tomato, pepper, and citrus. Her research publications address topics such as Xanthomonas pathogen diversity, remote sensing for disease detection, and sustainable agricultural practices. She collaborates on projects involving molecular diagnostics, pest management strategies, and crop resilience. Ongoing efforts include combating bacterial spot diseases, whitefly-transmitted viruses, and citrus black spot.

Philip Pooleمشاهده پروفایل

استاد

• Nitrogen Fixation
• Plant-Microbe Interactions
• Rhizosphere Microbiology
• +۳ مورد دیگر

Philip Poole is a Professor of Plant Microbiology at the University of Oxford's Department of Plant Sciences and Senior Research Fellow at Somerville College. His research focuses on plant-microbe interactions, nitrogen fixation, and rhizosphere microbiology. He has led major international projects including the BBSRC-NSF Synthetic Symbioses program (2014-2019) and the India-UK Nitrogen Fixation Consortium (2016-2019). With 26 grants as PI from the UK's BBSRC, he has secured over £10.5 million in funding. His work includes pioneering bacterial Lux biosensors for metabolite analysis, transcriptomics under sterile conditions, and metatranscriptomics in soil to study microbiome-plant interactions. Current projects model nitrogen fixation biochemistry in legume nodules and investigate rhizobia lifecycle transitions from rhizosphere colonization to symbiotic bacteroid differentiation. He co-directs the Oxford Centre for Plants for the 21st Century and serves on editorial/advisory boards for Microbiology UK, The Journal of Bacteriology, and Pivot Bio. His contributions include elucidating the ammonia-alanine pathway for nitrogen secretion and demonstrating symbiotic auxotrophy dependencies in bacteroids. Key achievements include developing global mutagenesis strategies (INSeq) and advancing understanding of microbial community structures in the rhizosphere. His research integrates molecular, genetic, and systems biology approaches to address global challenges in sustainable agriculture.

Jeppe Lund Nielsenمشاهده پروفایل

استاد

• Microbial Ecology
• Functional Ecology
• Genomics
• +۱۰ مورد دیگر

Jeppe Lund Nielsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. His research lies at the intersection of microbial ecology, genomics, and environmental biotechnology, with a strong focus on sustainable solutions for wastewater treatment, anaerobic digestion, and environmental monitoring. His primary research interests include Microbial Ecology, Functional Ecology, Genomics, Molecular and Technical Microbiology, Anaerobic Digestion, Metagenomics, and eDNA Metabarcoding . He applies molecular tools to understand microbial community dynamics in engineered and natural systems, particularly in wastewater and marine environments. His work contributes to the UN Sustainable Development Goals related to clean water, sustainable cities, and climate action. The recent publication trends reflect a strong emphasis on environmental applications of microbiome science, including nitrogen cycling in wastewater, bioaerosol exposure in workers, eDNA-based biodiversity monitoring, and valorization of waste streams through biotechnology. His articles frequently appear in high-impact environmental and microbiological journals and demonstrate interdisciplinary collaboration across engineering, ecology, and public health. Among his notable scientific contributions are leadership roles in significant research projects such as the AAU Bubble Project (Power2Proteins), JAMBO seabed impact study, and investigations into biotechnological pesticides. He has also contributed to public discourse through media engagement on topics like pesticide regulation and environmental innovation. Professor Nielsen has supervised PhD students, including M. Eskeldsen, and is actively involved in grants and collaborative research across Europe. He is a key member of research teams focused on environmental microbiology, wastewater biotechnology, and marine impact assessments. His lab integrates molecular biology, bioinformatics, and environmental engineering to address pressing sustainability challenges.

• Statistical Genomics and Bioinformatics
• High-Dimensional Data Analysis
• Bayesian Statistics
• +۴ مورد دیگر

Shili Lin is a Professor of Statistics at The Ohio State University's Department of Statistics, within the College of Arts and Sciences. She joined the faculty in 1995 after serving as the Neyman Visiting Assistant Professor at the University of California, Berkeley. Her expertise spans statistical genomics, bioinformatics, high-dimensional data analysis, Bayesian statistics, and Monte Carlo methods. Lin collaborates extensively with medical researchers to address challenges in genomic data such as ultra-high dimensionality, complex dependencies, and sparsity, focusing on diseases like cancer, multiple sclerosis, tuberculosis, and diabetes. She has contributed to developing computational tools for analyzing chromatin interactions, methylation patterns, and metagenomic samples. Lin holds a PhD from the University of Washington (1993). Her professional roles include serving as an Associate Editor for Biometrics , Statistical Applications in Genetics and Molecular Biology , and Statistics in Biosciences , as well as an Editorial Board member for Genetic Epidemiology . She is a standing member of NIH's Biostatistical Methods and Research Design Study Section and has served on multiple NSF and NIH grant review panels. Additionally, she is President Elect of the Caucus for Women in Statistics and has been a member of the ASA Committee on AAAS representation for six years. Her research interests emphasize statistical methodologies tailored to genomic data, including model selection, epigenetic analysis, and integrative approaches for multi-omics data. Lin's work often combines theoretical advancements with practical applications, such as predicting relapse in immune-mediated disorders and improving imputation techniques for single-cell Hi-C analysis. She has pioneered software tools like TopKLists and GrammR to facilitate ranked list aggregation and metagenomic data analysis. Lin's scientific accolades include ASA Fellowship (2004), AAAS Fellowship (2009), and membership in the International Statistical Institute (2014). Her contributions to statistical genetics and epigenomics have been recognized through grants and editorial leadership roles. While her research group focuses on cutting-edge methods, no formal advisees or students are explicitly listed in the provided materials.

Michael Levinمشاهده پروفایل

استاد

• Bioelectricity
• Regenerative Medicine
• Cancer Biology
• +۵ مورد دیگر

Michael Levin is a Vannevar Bush Professor and Distinguished Professor at Tufts University, affiliated with the School of Arts and Sciences (Department of Biology) and School of Engineering (Biomedical Engineering). His research focuses on bioelectricity, developmental biology, and collective intelligence. He leads the Allen Discovery Center and the Tufts Center for Developmental and Regenerative Biology. Education: PhD in Genetics from Harvard Medical School (1996); BS in Computer Science and Biology from Tufts University (1992). Research Interests: Integrates developmental biology, computer science, and cognitive science to study morphogenesis, regeneration, and cancer. Explores bioelectric signaling, synthetic organisms, and AI-driven discovery. Key areas include regenerative medicine, cancer reprogramming, and collective intelligence in biological systems. Publications: Over 600 articles, with recent work on xenobots, neuroevolution, and bioelectric therapies. Themes include bioelectric control of form, AI in biology, and collective intelligence. Awards: INNS Donald O. Hebb Award, AAAS Fellow, and Vox Future Perfect 50 List recognition. Frequently invited to speak at conferences on biology, AI, and consciousness. Advising & Labs: Mentored numerous postdocs and students, including pioneers in bioelectricity and synthetic biology. Lab focuses on interdisciplinary approaches to biological pattern formation and regeneration.

Jos Ruytinxمشاهده پروفایل

استاد

• Mycorrhizal Symbiosis
• Fungal Genetics
• Zinc Homeostasis
• +۵ مورد دیگر

Jos Ruytinx is a faculty member in the Department of Bio-engineering Sciences at Vrije Universiteit Brussel (VUB), Belgium. His research focuses on plant-fungal interactions, particularly ectomycorrhizal symbiosis and metal homeostasis mechanisms. He actively supervises graduate students and serves on PhD committees, contributing significantly to the academic community at VUB. Dr. Ruytinx's research interests span several interconnected fields: Mycorrhizal symbiosis between plants and fungi Zinc and heavy metal homeostasis in ectomycorrhizal systems Molecular mechanisms of fungal adaptation to metal stress Transport physiology in plant-fungal symbiotic relationships Evolutionary aspects of ectomycorrhizal fungi Responses to ionizing radiation in plant-microbe systems His recent publications demonstrate a strong focus on understanding how ectomycorrhizal fungi like Laccaria bicolor and Suillus luteus interact with their plant hosts under metal stress conditions, particularly zinc. Through comparative transcriptomics and functional characterization of transporters, his work reveals genetic determinants of symbiotic compatibility and mechanisms of metal tolerance. This research has implications for phytoremediation and sustainable agriculture in contaminated soils. Dr. Ruytinx has received recognition for his work with an h-index of 17 and over 2151 citations. His research is supported by multiple grants including: FWOAL1080: Zinc homeostasis in ectomycorrhizal symbiosis: nutrition and beyond (2023-2026) FWOTM1079: Reactive oxygen species in ectomycorrhizal fungi: damage, signaling or both? (2021-2025) OZR4191: Bilateral cooperation for joint PhD VUB-UHasselt (2023-2027) HERC66: 3D-CELLMAP project (2024-2028) As an academic advisor, Dr. Ruytinx has supervised 7 students through their theses, including Master's and Doctoral candidates. His laboratory focuses on fungal genetics and plant-microbe interactions, with particular expertise in zinc transport mechanisms in ectomycorrhizal systems. He actively participates in public engagement activities, including field samplings and expert commentary on fungi as biofertilizers.

Jeremy Wangمشاهده پروفایل

استادیار

• Computational Biology
• Genomics
• Microbiome Research
• +۷ مورد دیگر

Jeremy Wang, PhD is an Assistant Professor in the Department of Genetics at the UNC School of Medicine . His research focuses on applying high-performance computational methods and machine learning to analyze high-throughput sequence data using long-read technologies (e.g., Oxford Nanopore) to advance precision personalized medicine . Key disease areas include Inflammatory Bowel Diseases (IBD) Respiratory Infectious Diseases His lab specializes in microbiome analysis , host-pathogen interactions , and computational genomics , working with collaborators in clinical, translational, and computational domains. His publications demonstrate expertise in long-read sequencing applications for Pediatric cancer classification SARS-CoV-2 genomic epidemiology Microbiome spatiotemporal dynamics Murine disease models Drosophilid genome assemblies Metagenomic bias analysis Collaborations span UNC and global institutions, with current work extending to clinical laboratory partnerships for pathogen sequencing and oral microbiome sampling methodology.

• Bioinformatics
• Genomics
• Cancer Genomics
• +۷ مورد دیگر

Dr. Andre Kahles is a Lecturer in the Department of Computer Science at ETH Zürich, specializing in biomedical informatics. His research focuses on computational methods for analyzing large-scale genomic and transcriptomic data, with applications in cancer genomics, metagenomics, and precision medicine. He has contributed to the development of tools such as SplAdder for alternative splicing analysis, MetaGraph for petascale genomic data exploration, and SECEDO for subclone detection in cancer genomes. His work bridges algorithmic innovation with biological insights, addressing challenges in single-cell analysis, genome graph alignment, and multi-omics integration. Key research themes include: Developing scalable algorithms for processing nanopore sequencing and metagenomic data Characterizing somatic mutations and non-coding drivers in cancer genomes Advancing genome graph-based alignment and annotation methods Integrating multi-omics data for clinical decision-making and tumor profiling His publications span topics like RNA-seq analysis, chromothripsis in cancers, and global urban microbiome tracking through the MetaSUB consortium. Kahles has collaborated on landmark projects including the Pan-Cancer Analysis of Whole Genomes (PCAWG) and the Tumor Profiler Study.

David Burtonمشاهده پروفایل

استاد

• Soil Science
• Nitrogen Cycling
• Greenhouse Gas Emissions
• +۵ مورد دیگر

Dr. David Burton is a Professor in the Department of Plant, Food, and Environmental Sciences at Dalhousie University's Faculty of Agriculture. He serves as Director of the Centre for Sustainable Soil Management and leads initiatives in soil health, greenhouse gas emissions, and sustainable agricultural practices. His teaching spans undergraduate and graduate courses in soil science, nutrient management, and climate change. Research focuses on microbial metabolism in soil, nitrogen cycling, and the environmental impacts of agricultural practices. He co-founded the Atlantic Soil Health Lab and manages the Greenhouse Gas Analysis Lab. Key affiliations include the Canadian Society of Soil Science (Fellow), Soil Conservation Council of Canada, and Fertilizer Canada's 4R Research Network. Recent work emphasizes soil's role in climate resilience, including presentations on regenerative farming and soil carbon sequestration. He collaborates with government and industry to develop climate-smart soil management policies and tools for nitrogen management optimization. Awards: Fellow of the Canadian Society of Soil Science Labs: Centre for Sustainable Soil Management, Greenhouse Gas Analysis Lab, Atlantic Soil Health Lab Grants: NSERC CREATE Climate Smart Soils