Daniel Baum

Daniel Baum is a Research Professor and Head of the Visual Data Analysis research group at the Zuse Institute Berlin (ZIB), which is affiliated with Freie Universität Berlin. His work spans across scientific visualization, computational biology, and image analysis, with a particular focus on developing methods for analyzing complex biological structures and neural circuits. He is actively involved in multiple interdisciplinary research projects including HFSP Chitons, Geometric Learning for Single-Cell RNA Velocity Modeling, and RobustCircuit.

Dr. Baum's research interests center on visual and data-centric computing approaches to solve complex problems in biology and medicine. His work bridges the gap between computational methods and biological applications, with significant contributions to cryo-electron tomography analysis, neural circuit mapping, and geometric morphometrics. He develops innovative algorithms for 3D reconstruction, image segmentation, and visualization of biological structures, from molecular to organismal scales.

His publication record demonstrates consistent contributions to visualization techniques applied to biological problems, with recent work focusing on neural circuit analysis in zebrafish and Drosophila, biomechanical studies of animal structures, and advanced methods for analyzing ancient artifacts. The research shows a clear trajectory toward increasingly sophisticated multimodal data integration and machine learning approaches.

Dr. Baum leads a productive research group with several key collaborators who frequently appear as co-authors on his publications, indicating a strong mentoring relationship. His projects involve substantial funding from various sources supporting interdisciplinary collaborations across biology, computer science, and engineering.

His laboratory at ZIB focuses on visual data analysis for complex biological systems, with particular strength in developing computational methods for neuroscience applications and biomaterial analysis. The group maintains strong collaborations with multiple institutions working on cutting-edge imaging technologies and biological model systems.