Transcriptome Analysis Professors and Supervisors in Austria

Damian MeyersburgView profile

Associate Clinical Professor

Paracelsus Private Medical UniversityAustria

Damian Meyersburg is a Clinical Associate Professor and Senior Physician in the Department of Dermatology and Allergology . His work bridges clinical practice and research in skin infections, immunological disorders, and pharmacological interventions. Education : MD (Medical Doctorate) Research Interests: Dermatology , Allergology , and Clinical Research , with a focus on: Infectious Skin Diseases (e.g., bacterial infections, scabies) Immunological Skin Disorders (e.g., acute generalized exanthematous pustulosis, atopic dermatitis) Pharmacological Interventions (e.g., biologics, topical treatments) Recent publications highlight his expertise in transcriptomic analysis , randomized controlled trials , and clinical guidelines for complex skin conditions. His work is frequently cited and referenced in clinical guidelines and social media platforms like X and Facebook. Collaborations include institutions across Europe, with a strong emphasis on multicenter studies and cross-disciplinary research .

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Kathryn LilleyView profile

Professor

Graz University of TechnologyAustria

Kathryn Lilley is a Professor in the Department of Biochemistry at the University of Cambridge, where she has held academic positions since 2004. She is Director of the Cambridge Centre for Proteomics and a Fellow of Jesus College, Cambridge. She also serves as a Member of the Milner Therapeutics Institute and previously led the Mass Spectrometry theme at the Rosalind Franklin Institute. Her research focuses on developing innovative technologies for spatial proteomics and transcriptomics, with particular emphasis on understanding the dynamic organization of proteins and RNA within cells. Her group creates robust open-source informatics pipelines that enable end-to-end analysis of proteomic data, making their methods widely accessible to the research community. Recent work has expanded into investigating the subcellular spatial transcriptome and its interactions with the proteome, generating significant interest in RNA biology. Lilley's publications reveal a strong focus on advancing spatial proteomics methodologies, with recent work emphasizing computational approaches, neural networks for data analysis, and novel techniques for studying RNA-protein interactions. Her research bridges biochemistry, computational biology, and cell biology, with applications in understanding cellular perturbation responses and disease mechanisms. 2020 Elected as a member of EMBO 2018 Human Proteomics Organisation, Distinguished Achievement in Proteomic Sciences Award 2017 European Proteomics Association Juan Pablo Albar Proteomics Pioneer award 2012 Fellow of the Royal Society of Biologists Lilley receives considerable funding from the Pharmaceutical Industry and collaborates widely both nationally and internationally. She heads a large research group that develops technologies for interrogating spatial distributions of the proteome and its reorganization upon cellular perturbation. Her work is highly regarded in the field, as evidenced by numerous plenary and keynote invitations at international conferences.

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Nicole BorthView profile

Associate Professor

University of Natural Resources and Life Sciences ViennaAustria

Nicole Borth is Associate Professor (associate Univ.Prof.) at the University of Natural Resources and Life Sciences, Vienna (BOKU) and Deputy Head of the Institute of Animal Cell Technology and Systems Biology . Her work sits at the intersection of cell engineering, systems biology and biopharmaceutical manufacturing, with CHO and HEK293 cells as primary platforms. Research in a nutshell: Genome-wide CRISPR/Cas deletion and activation screens to map essential loci and boost recombinant protein titres. Epigenetic and synthetic-biology toolboxes (dCas9-DNMT, synthetic promoters, RNA devices) for multiplexed gene-control. Glyco-engineering and biomarker discovery to optimise critical quality attributes of monoclonal antibodies. Low-cost, animal-component-free media design and microfluidic single-cell cloning to shorten development timelines. Between 2022-2025 her group released a rapid succession of papers exploiting nanopore Cas9-targeted sequencing to pinpoint transgene integration sites, unveiled novel stress-biomarkers for difficult-to-express mAbs, and provided public-domain glyco-analytics for the NIST CHO reference line. Parallel projects apply similar tool-chains to AAV production in HEK293 and characterise human diamine oxidase biopharmaceuticals. Awards & funding: Specific prizes not enumerated in supplied text; however, the volume and recency of high-impact publications indicate sustained competitive funding. Contact: nicole.borth@boku.ac.at | Tel +43 1 47654-79064 | Muthgasse 11, 1190 Vienna, Austria.

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Gerald StriednerView profile

Professor

University of Natural Resources and Life Sciences ViennaAustria

Gerald Striedner serves as Professor and Head of the Institute of Bioprocess Science and Engineering at the University of Natural Resources and Life Sciences, Vienna (BOKU). He leads a comprehensive research group focused on upstream process development for the production of recombinant proteins, plasmid DNA, and virus-like particles using bacterial, insect, and mammalian cell systems. His research interests span advanced process characterization , E. coli expression system design , rational bioprocess development , process monitoring and control , continuous biomanufacturing , and synthetic biology applications . His work integrates PAT/QbD concepts to create efficient production platforms for bio-pharmaceutical, industrial, and environmental applications. Analysis of his recent publications reveals a strong focus on cutting-edge bioprocess technologies including non-canonical amino acid incorporation, advanced protein purification methods, continuous manufacturing platforms, and enzyme engineering for polymer degradation. His research demonstrates a consistent emphasis on both fundamental process understanding and practical applications for industrial biotechnology. As an academic leader, Professor Striedner supervises a diverse team including PhD students, postdocs, and senior scientists. His research group maintains active collaborations with academic partners across Europe, including institutions in Austria, Portugal, and Germany, reflecting the international scope of his work. His laboratory operates within BOKU's Institute of Bioprocess Science and Engineering, which features advanced pilot plant facilities for training and research purposes, providing an integrated environment for both fundamental research and practical application development in bioprocess engineering.

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Justyna RechthalerView profile

Researcher

University of Applied Sciences Wiener NeustadtAustria

Dr. Justyna Rechthaler is a Research Associate at the University of Applied Sciences Wiener Neustadt, specifically based at the Biotech Campus Tulln. She specializes in Chromatography & Mass Spectrometry and contributes to the Master's Program in Bio Data Science. Her research focuses on proteomics, metabolomics, and bioinformatics applications across multiple domains. Dr. Rechthaler leads and contributes to several significant research projects including CIM (Tumor stroma analysis using nano LC-MS/MS), Myko-Ten (investigating mealworms for mycotoxin degradation), and OMICS 4.0 (bioinformatics in life science research). Her work combines advanced analytical techniques with computational approaches to address complex biological questions. Analysis of her recent publications (2022-2024) reveals a strong focus on optimizing protein identification in proteomics, particularly for insect models, with emphasis on sample preparation techniques and data processing methodologies. She also publishes extensively on metabolomics approaches for studying plant-pathogen interactions and novel microbial species with pharmaceutical potential. Her scientific contributions demonstrate expertise in: Nano LC-MS/MS methodologies Proteomics and metabolomics data analysis Mycotoxin research and food safety Cancer diagnostics and tumor microenvironment analysis Interdisciplinary bioinformatics approaches Dr. Rechthaler maintains active research collaborations, particularly with the University of Applied Sciences IMC Krems on cancer diagnostics projects that combine Raman microscopy with artificial intelligence. Her work bridges analytical chemistry, bioinformatics, and practical applications in healthcare and food safety. Her laboratory, known as Ra-Dia_M, focuses on advanced analytical techniques for biological research, particularly in the areas of proteomics and metabolomics, supporting multiple research projects across different scientific domains.

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Wolfram WeckwerthView profile

Professor

University of ViennaAustria

Wolfram Weckwerth is a Full Professor at the University of Vienna, Austria, and Head of the Department of Ecogenomics and Systems Biology since 2013. He founded the Vienna Metabolomics Center (VIME) in 2015, integrating environmental, biotechnological, and biomedical research. His work spans plant, microbial, and human systems, focusing on genotype-environment-phenotype relationships using metabolomics, proteomics, and systems biology.

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Andreas WanningerView profile

Professor

University of ViennaAustria

Andreas Wanninger is a full Professor and Head of the Department of Evolutionary Biology at the University of Vienna, Austria. His research focuses on Evolutionary Developmental Biology (EvoDevo) and MorphoEvoDevo , particularly in aquatic invertebrates with ciliated larvae (lophotrochozoans) and other protostomes. He leads the Wanninger Lab, which employs cutting-edge techniques such as immunolabeling, confocal microscopy, in situ hybridization, and single-cell RNA sequencing to explore comparative developmental genetics and morphology across diverse species. Editorial Leadership : Editor-in-Chief of Organisms Diversity and Evolution since 2011, Associate Editor for multiple journals. Research Impact : Over 150 peer-reviewed publications spanning molluscan neuroanatomy, Hox gene evolution, larval development, and environmental adaptation. Collaborative Networks : Coordinated the EU MOLMORPH network (2005–2010); active in international societies like the International Society for Invertebrate Morphology. Key Research Themes : Evolution of nervous and muscular systems in lophotrochozoans, molecular mechanisms of larval metamorphosis, comparative transcriptomics of shell and muscle formation, and phylogenetic implications of developmental patterns. His work bridges traditional morphology with modern molecular tools to address fundamental questions in animal evolution. Scientific Contributions : Notable for advancing understanding of molluscan Hox gene expression, neurogenesis in non-model taxa (e.g., bryozoans, sipunculans), and integrating morphological data with genomic insights. His lab maintains extensive stage-specific transcriptome databases for comparative studies. Contact & Affiliation : Based at the Unit for Integrative Zoology (Djerassiplatz 1, Vienna), he collaborates globally and invites researchers to join his team for projects on marine and freshwater invertebrates.

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Oleg SimakovView profile

Associate Professor

University of ViennaAustria

Oleg Simakov is an Associate Professor and Head of the Department of Neuroscience and Developmental Biology at the University of Vienna. His research focuses on metazoan genome architecture, evolutionary transitions, and cephalopod-specific genomic innovations through comparative and computational approaches. BS in Biology, University of Karlsruhe MS in Biology, University of Heidelberg PhD in Biology, EMBL/University of Konstanz Key research areas include: Evolutionary genomics of metazoans Syntenic gene cluster analysis 3D chromatin modeling Cephalopod molecular evolution His publications reveal trends in chromosomal evolution , gene linkage dynamics , and repetitive element expansion across diverse taxa including octopuses, hydra, and lungfish. Current work involves genomic investigations of Euprymna scolopes and Hydra magnipapillata to elucidate evolutionary novelties. Current research team includes: PhD students: Koto Kon, Lisa Rouressol Master's students: Georgios Efthymiadis, Gözde Yalcin Postdocs: Darrin Schultz, Thea Rogers Technicians: Fatih Sarigöl, Nina Znidaric

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Agnes DraxlerView profile

Researcher

University of ViennaAustria

Agnes Draxler is a researcher at FH Campus Wien within the Faculty of Life Sciences and Department of Nutritional Sciences . Her work focuses on dietary interventions, oxidative stress, and DNA damage in aging and chronic disease contexts. University: FH Campus Wien School: Faculty of Life Sciences Department: Department of Nutritional Sciences Academic Rank: Researcher Draxler's research spans nutritional science , metabolomics , and lipidomics , with a focus on: Dietary nitrate from beetroot juice and cardiovascular health High-protein diets in older adults Vitamin D supplementation and chromosomal stability Machine learning applications in DNA damage analysis Her recent publications highlight collaborations across Austria, Germany, and Australia , with interdisciplinary applications in: Lipidomics for SARS-CoV-2 research Metabolomic profiling in endurance athletes Antioxidant therapies for hypertension

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Laura de RooijView profile

Researcher

University of ViennaAustria

Laura de Rooij is a Principal Investigator at CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences since September 2022. Her research combines single-cell omics with functional vascular assays to characterize endothelial cell heterogeneity in health, aging, and disease contexts. University of Amsterdam - Biomedical Sciences graduate McMaster University - RNA-binding protein research in leukemia VIB-KU Leuven - Postdoctoral work in angiogenesis and vascular metabolism CeMM - Lab leader since 2022 Research focus areas: Endothelial cell aging mechanisms across organs Disease-associated vascular rewiring in conditions like COVID-19 and cancer Development of 3D culture systems including vessel-on-chip platforms CRISPR-based functional interrogation of molecular circuitries in endothelial dysfunction Key publications highlight: Characterization of lipid-processing endothelial subtypes in breast cancer Identification of profibrotic endothelial phenotypes in pulmonary fibrosis Advances in single-cell transcriptome atlases across tissues Development of organotypic human endothelial models using iPSCs Laboratory resources: Lab website maintaining research continuity 3D culture platforms for EC functional analysis Collaborative networks across European research institutes

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Christoph BockView profile

Professor

University of ViennaAustria

Christoph Bock is a Principal Investigator at CeMM Research Center for Molecular Medicine and Professor/Head of the Institute of Artificial Intelligence at Medical University of Vienna. He leads the Biomedical Sequencing Facility and contributes to the Human Cell Atlas and ELLIS initiatives. Key research areas: Single-cell biology , Epigenetics , CRISPR screening , Machine learning , Cell therapy , Multi-omics Major contributions: CellWhisperer (natural language single-cell analysis), JAK-STAT signaling in immune homeostasis, LIQUORICE for liquid biopsies, and RnBeads software Scientific Awards include: ERC Starting Grant (2016) ERC Consolidator Grant (2021) Overton Prize (2017) Erwin Schrödinger Prize (2022) Clarivate Highly Cited Researcher (2019-2024) His lab develops bioinformatics tools (e.g., RnBeads, LIQUORICE) and applies systems immunology to understand disease mechanisms. Startup leadership : Co-founder of Myllia Biotechnology. Collaborations include clinical translations and tech development with the Biomedical Sequencing Facility.

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Florian GrebienView profile

Professor

University of ViennaAustria

Florian Grebien is a Professor at the Department for Biological Sciences and Pathobiology, University of Veterinary Medicine Vienna, and Principal Investigator at the St. Anna Children’s Cancer Research Institute (CCRI) and Adjunct PI at CeMM. His research focuses on molecular mechanisms of pediatric leukemia driven by oncoproteins. Research Interests: Pediatric leukemia Fusion oncoproteins Transcriptional/epigenetic networks CRISPR/Cas9 screening Targeted degradation of oncoproteins Proteomic/transcriptomic analysis Scientific Awards: ERC Starting Grant His lab combines cellular models, animal models, and primary human samples to validate molecular mechanisms, collaborating with institutions like Ludwig Boltzmann Institute and CeMM. Funding sources include the European Research Council.

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Georg BusslingerView profile

Researcher

University of ViennaAustria

Georg Busslinger is a group leader at the Medical University of Vienna, leading the Gastrointestinal Biology Research Group under the Department of Internal Medicine III and Division of Gastroenterology & Hepatology. His research focuses on epithelial cell biology of the human gastrointestinal tract, particularly the esophagus, stomach, and small intestine, using organoid technology and single-cell genomics. University of Vienna (B.S. in Molecular Biology) ETH Zurich (Master’s in Molecular Biology) Rockefeller University (research on epigenetic regulation of interferon response) Research Institute of Molecular Pathology (Ph.D. on cohesin genome localization) Hubrecht Institute (postdoctoral work on organoid biology) His research utilizes CRISPR/Cas9 genome editing and single-cell RNA sequencing to study transcriptional regulation, epithelial differentiation, and disease mechanisms in gastrointestinal organs. He investigates how nutrients and microbiome signals contribute to carcinogenesis and employs organoid models to dissect functional roles of cell types like acid-secreting parietal cells and hormone-producing enteroendocrine cells. Recent publications highlight his work on ulcerative colitis (2025), diet-induced mutations (2023), Barrett’s esophagus progression (2022), and foundational studies on single-cell characterization of gastrointestinal epithelia (2021). Collaborations with clinicians at UMC Utrecht explore organoid applications in precision oncology. Georg Busslinger's lab is funded by the FWF Stand-Alone Program (PAT6421424) and hosts predoctoral fellows including Katharina Kohl, Franziska Langner, Daria Pajak, and Gabriela Vladova. His team also includes Lab Manager Michael Gerstorfer.

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