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Hauke SmidtView profile

Professor

• Microbiology
• Environmental Microbiology
• Gut Microbiota
• +4 more

Hauke Smidt is a Personal Professor at Wageningen University & Research, affiliated with the Molecular Ecology group within the Faculty of Veterinary Medicine and Animal Sciences. His research focuses on microbial ecology, particularly gut microbiota dynamics, antibiotic resistance, environmental microbiology, and the One Health framework. Smidt has supervised over 50 PhD students and contributed to 519 publications, including studies on microbiome resilience, fermented food impacts, and bioremediation strategies. Education and affiliations include leadership roles in projects addressing antimicrobial resistance, pig health, and drinking water microbiology. His work spans collaborations across Europe and Asia, with notable contributions to understanding microbial community responses to environmental stressors and dietary interventions. Smidt is actively involved in public outreach, as seen in media contributions discussing microbiome research and health benefits. Key projects include aquifer treatment for drinking water, microbiome simulation models, and combating plant pathogens. His awards and recognition are not explicitly listed, but his extensive publication record and project leadership highlight significant academic impact.

Hyun KooView profile

Professor

• Biofilms
• Oral Infectious Diseases
• Nanotechnology
• +3 more

Hyun (Michel) Koo is a Professor at the University of Pennsylvania School of Dental Medicine , with affiliations in the Department of Orthodontics , Division of Community Oral Health , and Division of Pediatric Dentistry . As Co-Founder and Co-Director of the Center for Innovation & Precision Dentistry (CiPD) , he leads interdisciplinary efforts merging bioengineering, nanotechnology, and oral health research. Education : DDS and PhD Research Focus : Biofilms, bacterial-fungal interactions, and nanotechnology for oral disease prevention Leadership : Co-Director of CiPD; key roles in training programs like NIDCR-sponsored R90 and T90/R90 Dr. Koo’s research explores biofilm mechanisms in oral infectious diseases, particularly childhood caries, through engineering methods and microrobotics . His team developed micron-scale robots for automated biofilm eradication and FDA-approved nanoparticles for caries prevention. Collaborations with Penn Engineering, including Dr. Daeyeon Lee and Dr. Kacy Cullen, emphasize translational approaches. The 15 most recent publications highlight his work in nanorobotics , interkingdom biofilms , and precision diagnostics . Articles span 2025–2024 and address topics like adaptive micromotors , biofilm matrix degradation , and single-cell microbial interactions . These emphasize his focus on targeted therapies and biofilm microenvironment engineering . Key Awards : Elected Fellow, American Association for the Advancement of Science (AAAS) IADR Distinguished Scientist Award for innovative dental research Dr. Koo trains next-generation researchers through the CiPD NIDCR T90/R90 Postdoctoral Training Program , mentoring fellows like Smruti Nair (ACE2 Chewing Gum development) and Zhi Ren (K99 awardee). His work intersects with Penn Health-Tech, CT3N , and Penn Institute for Biomedical Informatics , fostering transdisciplinary innovation.

Angela D KentView profile

Professor

• Microbial Ecology
• Nitrogen Cycling
• Agroecosystems
• +3 more

Angela D. Kent is a Professor in the Department of Natural Resources and Environmental Sciences at the University of Illinois Urbana-Champaign, where she also serves as Director of the Program in Ecology, Evolution, and Conservation Biology within the School of Integrative Biology. She is affiliated with the Carl R. Woese Institute for Genomic Biology. Her research focuses on microbial communities in agroecosystems and natural environments, particularly their roles in nitrogen cycling, soil health, and sustainable bioenergy production. Key research interests include microbial interactions in plant-microbe systems, the impact of genetic variation in crops on microbial processes, and the ecological and biogeochemical implications of soil microbiomes. She has authored over 99 publications and supervised datasets on topics such as denitrification dynamics, rhizosphere microbiome assembly, and microbial contributions to nitrogen retention. Dr. Kent has received the NACTA Educator Award (2012) and has contributed to high-impact studies on topics like microbial community responses to environmental stressors and the application of stable isotopes in bioenergy research. Her work bridges microbial ecology, agronomy, and environmental science, emphasizing practical solutions for sustainable agriculture and ecosystem management.

Mary K. FirestoneView profile

Professor

• Soil Microbial Ecology
• Carbon Cycling
• Nitrogen Cycling
• +2 more

Mary K. Firestone is Professor of the Graduate School in the Department of Environmental Science, Policy and Management at UC Berkeley. Her research revolutionized understanding of soil microbial processes, particularly oak regeneration techniques and microbial mediation of carbon/nitrogen cycling in terrestrial ecosystems. Firestone's work examines microbial responses to environmental change, including drought, rewetting, and warming scenarios. Her lab develops innovative methods like quantitative stable isotope probing (qSIP) to trace microbial activity in complex soil environments. Research spans grassland, rangeland, and agricultural ecosystems. Honors include election to the National Academy of Sciences (2017), Soil Ecology Society Career Achievement Award (2017), and American Geophysical Union Fellowship (2016). She holds the Betty and Isaac Barshad Chair in Soil Sciences. Current PhD candidates and postdoctoral researchers in the Firestone Lab investigate viral-bacterial interactions in soil, mycorrhizal carbon transfer, and drought impacts on soil carbon persistence. Field studies at California's Hopland Research Center examine grassland responses to climate variability.

Jennifer L ClarkeView profile

Professor

• Statistical Methodology
• Bioinformatics/Computational Biology
• Data Mining/Machine Learning
• +3 more

Jennifer L. Clarke is a Professor in the Department of Statistics at the University of Nebraska–Lincoln and Director of the Quantitative Life Science Initiative. She holds leadership roles in enabling big data integration across the University of Nebraska system through collaborative research programs. Her affiliations include the Institute of Agriculture and Natural Resources (IANR) and the College of Agriculture and Natural Resources. Dr. Clarke's research focuses on statistical methodology for high-dimensional data, computational biology, bioinformatics, and bacterial genomics. Her work bridges statistical innovation with applications in oncology, microbiome analysis, and agricultural phenomics. Key areas include predictive modeling, machine learning, and genomic/metagenomic data integration. Her recent publications span cancer biomarker discovery, plant phenotyping methodologies, and microbial community analysis, reflecting her interdisciplinary approach. Articles emphasize translational applications like therapeutic target identification and precision agriculture. Dr. Clarke leads initiatives fostering collaboration between statisticians and domain scientists, including the Quantitative Life Science Initiative and contributions to the Agricultural Genome-to-Phenome Initiative (AG2PI). Her work advances data-driven solutions for healthcare and food security challenges. Notable projects include developing statistical tools for microbiome studies, analyzing root architecture via 3D imaging, and investigating cranberry-derived compounds' cancer-inhibitory mechanisms. Her methodological contributions include hybrid clustering techniques and predictive model validation frameworks.

Lucas PaoliView profile

Researcher

• Microbiome Research
• Microbial Immunity
• Ecological Genomics
• +4 more

Lucas Paoli is a Researcher and Course Instructor at École Polytechnique Fédérale de Lausanne (EPFL), Switzerland. He leads the Paoli Lab (Microbiome Immunity and Ecology) within the Global Health Institute (GHI) under the School of Life Sciences (SV). His roles include scientific collaboration and teaching responsibilities in life sciences engineering. Paoli holds a PhD in Microbiome Research from ETH Zürich (2018-2023), an M.Phil. in Environmental Policy from the University of Cambridge (2017-2018), and an M.Sc. in Ecology and Evolution from École normale supérieure (2015-2017). Research Focus: His work bridges microbial immunity and ecology, investigating how microbes defend against viral infections across ecosystems like oceans and human microbiomes. Techniques include global-scale metagenomics and functional genomics to study immune strategies and ecological interactions. Key themes involve microbial community dynamics, viral defense mechanisms, and the impact of environmental factors on microbial immunity. Lab & Education: The Paoli Lab explores microbiome-immunity interactions with a focus on ecological contexts. Paoli supervises PhD students in Life Sciences Engineering. His research outputs span microbial ecology, metagenomic tool development, and marine microbiome studies. Contact: lucas.paoli@epfl.ch, AAB 1 39, +41 21 693 16 99.

Jonathan ConwayView profile

Assistant Professor

• Plant-microbe interactions
• Biomolecular engineering
• Systems biology
• +4 more

Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.

Philip PooleView profile

Professor

• Nitrogen Fixation
• Plant-Microbe Interactions
• Rhizosphere Microbiology
• +3 more

Philip Poole is a Professor of Plant Microbiology at the University of Oxford's Department of Plant Sciences and Senior Research Fellow at Somerville College. His research focuses on plant-microbe interactions, nitrogen fixation, and rhizosphere microbiology. He has led major international projects including the BBSRC-NSF Synthetic Symbioses program (2014-2019) and the India-UK Nitrogen Fixation Consortium (2016-2019). With 26 grants as PI from the UK's BBSRC, he has secured over £10.5 million in funding. His work includes pioneering bacterial Lux biosensors for metabolite analysis, transcriptomics under sterile conditions, and metatranscriptomics in soil to study microbiome-plant interactions. Current projects model nitrogen fixation biochemistry in legume nodules and investigate rhizobia lifecycle transitions from rhizosphere colonization to symbiotic bacteroid differentiation. He co-directs the Oxford Centre for Plants for the 21st Century and serves on editorial/advisory boards for Microbiology UK, The Journal of Bacteriology, and Pivot Bio. His contributions include elucidating the ammonia-alanine pathway for nitrogen secretion and demonstrating symbiotic auxotrophy dependencies in bacteroids. Key achievements include developing global mutagenesis strategies (INSeq) and advancing understanding of microbial community structures in the rhizosphere. His research integrates molecular, genetic, and systems biology approaches to address global challenges in sustainable agriculture.

Pamela RonaldView profile

Professor

• Plant Genetics
• Crop Improvement
• Plant-Microbe Interactions
• +3 more

Pamela Ronald is a Distinguished Professor of Plant Pathology at the University of California, Davis, affiliated with the Department of Plant Pathology within the College of Agricultural and Environmental Sciences. Her research focuses on understanding and enhancing crop resilience, particularly in rice, through genetic and molecular mechanisms. Key areas include plant immunity against pathogens, climate adaptation, and sustainable agricultural practices. Education and Background: Details on her academic qualifications are not explicitly mentioned in the provided text, but her career trajectory suggests advanced training in plant genetics and pathology. Research Interests: Ronald’s work centers on engineering disease-resistant crops, studying plant-microbe interactions, and developing climate-resilient varieties. Notably, she has contributed to identifying genes like XA21 that confer resistance to bacterial infections and pioneered methods to reduce methane emissions in rice. Her studies also explore the role of sulfated peptides in pathogen virulence and host defense mechanisms. Publications Trends: Her recent articles emphasize molecular mechanisms of plant immunity, genetic engineering applications, and sustainability challenges. Themes include directed evolution of immune receptors, machine learning in genotype-phenotype prediction, and mitigation of agricultural greenhouse gases. Awards and Recognition: While specific awards are not listed here, her leadership in plant genetics and advocacy for evidence-based biotechnology policies reflect significant recognition in her field. Grants and Advising: Ronald has led projects funded by agencies like the U.S. Department of Energy, focusing on bioenergy crops like switchgrass. She collaborates globally on initiatives such as the Rice Protein Tagging Project and the AI Institute for Next Generation Food Systems. Labs and Teams: She directs the Crop Genetics Innovation Lab at UC Davis, fostering interdisciplinary research in crop improvement and sustainable agriculture.

Steven SicilianoView profile

Professor

• Soil Toxicology
• Environmental Science
• Polar Ecosystems
• +5 more

Steven Siciliano is a Professor and NSERC/FCL Industrial Research Chair in In Situ Remediation and Risk Assessment at the University of Saskatchewan's College of Agriculture and Bioresources. He leads the CREATE Human and Ecological Risk Assessment Program. His expertise spans soil toxicology, greenhouse gas dynamics in polar ecosystems, and nitrogen cycle interactions in contaminated environments. Education: Ph.D. in Toxicology, University of Saskatchewan B.Sc. in Biochemistry, Concordia University Research Interests: His work focuses on human-soil interaction dynamics, including soil pollution impacts on human health (e.g., PAH toxicity via soil ingestion) and ecosystem resilience (e.g., nitrogen cycle disruptions). He investigates Arctic/Antarctic soil microbiology, greenhouse gas production in polar deserts, and the ecological effects of pollutants like mercury and petroleum hydrocarbons. His lab is divided into toxicology (e.g., metal cardiovascular effects, soil ingestion models) and ecology (e.g., sub-zero water effects on gene expression, Arctic nitrogen cycles). Teaching: Teaches courses on environmental fate analysis, contaminated site management, and advanced risk assessment methodologies at both undergraduate and graduate levels. Courses include EVSC 420, TOX 820, and EVSC 821. Grants & Labs: Directs the CREATE Program and leads projects funded by NSERC and industry partnerships. His lab integrates fieldwork, molecular techniques, and modeling to address environmental remediation challenges. Collaborates on projects like cryoturbation-driven carbon dynamics and microbial community analysis in agricultural systems. Labs/Teams: Active in soil science research teams, including Arctic soil microbiology and bioremediation innovation groups. Engages in interdisciplinary collaborations with environmental engineers and ecologists to advance in situ remediation technologies.

Andrea CarminatiView profile

Professor

• Environmental Soil Physics
• Vadose Zone Hydrology
• Soil-Plant Water Relations
• +4 more

Andrea Carminati is a Full Professor at the Department of Environmental Systems Science, ETH Zurich. His research focuses on soil-plant hydraulics , rhizosphere dynamics , and drought adaptation mechanisms in crops and forest species. He investigates how root traits , soil texture , and biogenic substances like mucilage influence water uptake , gas exchange , and soil microbial activity . Key Research Areas: Soil-Plant Water Relations Rhizosphere Hydrology Drought Resistance in Maize and Trees Microplastics in Agricultural Soils Hydraulic Redistribution and Isohydricity Contact: Email: andrea.carminati@usys.ethz.ch Phone: +41 44 633 61 60 Recent studies highlight his work on soil texture-specific transpiration responses , rhizosheath properties under drought , and microplastic impacts on soil hydrology . He employs advanced techniques like X-ray computed tomography and neutron radiography to visualize root-soil interactions.

Shahid SiddiqueView profile

Associate Professor

• Plant-Nematode Interactions
• Agricultural Entomology
• Molecular Biology
• +3 more

Shahid Siddique is an Associate Professor in the Department of Entomology and Nematology at the University of California, Davis. His research focuses on understanding molecular and applied aspects of plant-parasitic nematode interactions with host plants. He aims to develop sustainable strategies to mitigate nematode-induced crop losses through genetic, biochemical, and biotechnological approaches. His lab is particularly interested in host resistance mechanisms, nematode effector proteins, and biocontrol solutions. Education: MSc, Bahauddin Zakariya University, Multan, Pakistan PhD, University of Natural Resources and Life Sciences, Vienna, Austria Habilitation, University of Bonn, Germany Research Interests: Siddique’s work bridges basic and applied research, including cell surface signaling in plant-parasitic nematode interactions, functional characterization of secretory proteins, molecular diagnostics for nematodes, and biocontrol strategies. Current projects explore recombination hotspots in nematode genomes, CRISPR-based resistance engineering, and redox signaling mechanisms. Teaching: General Plant Nematology (NEM100) in Spring 2020 Labs/Teams: The Siddique Lab focuses on translating molecular discoveries into practical pest management solutions. Collaborations involve genomic analysis, proteomics, and field trials to address global agricultural challenges.

• Plant-Microbe Symbiosis
• Molecular Genetics
• Plant Developmental Biology
• +3 more

Prof. Ton Bisseling is a distinguished Professor at the Laboratory of Molecular Biology, Wageningen University & Research. His research focuses on plant-microbe symbiosis, particularly root nodule development in legumes, mycorrhizal interactions, and the genetic mechanisms underlying symbiotic relationships. He has supervised over 70 PhD candidates, including ongoing projects like 'The role of endodermis in mycorrhizal symbiotic interactions' and 'Recruiting microbial communities to combat soil salinization.' Key research interests include understanding symbiotic gene regulation, auxin biosynthesis in nodules, and the role of strigolactones in plant-microbe communication. His work bridges fundamental biology with agricultural applications, addressing sustainable crop production challenges. Bisseling has contributed to 431 research outputs spanning articles, datasets, and book chapters. Notable datasets include RNA sequencing studies on ectomycorrhizal roots and strigolactone biosynthesis. He actively engages in public discourse on topics like nitrogen fixation and Chinese PhD student recruitment in Dutch academia. Current projects involve microbial community analysis in saline agriculture and citrus pathogen mechanisms. His lab collaborates globally, with recent studies in China, the Netherlands, and Saudi Arabia.

Gregory Michael PeckView profile

Associate Professor

• Tree fruit production
• Hard cider research
• Organic agriculture
• +7 more

Gregory Michael Peck is an Associate Professor and Director of Undergraduate Studies for the Plant Sciences Major at Cornell University's School of Integrative Plant Science, Horticulture Section. His research focuses on sustainable tree-fruit production, particularly in organic apple systems , cider apple germplasm evaluation , and crop-load management through pollen tube growth modeling . Award-winning educator (2021 Cornell Teaching, Advising & Mentoring Award) 2018 Grower Advocate of the Year (American Cider Association) Active in outreach through field days, extension publications, and social media Peck's work spans tree-fruit physiology , soil health , and mechanization of orchard practices . He co-teaches Cornell's popular cider appreciation course with microbiologist Kathy Arnink, combining apple production science with fermentation expertise. His research explores phenolic development , nitrogen management , and yeast interactions in cider production systems. Recent publications highlight collaborations in rootstock effects , compost applications , and fermentation chemistry . Peck's career has included work in California, Washington, New York, and Virginia, with training spanning horticulture, plant physiology, soil science, and agricultural economics.

Manuel KleinerView profile

Associate Professor

• Host-Microbe Interactions
• Microbial Ecology
• Metaproteomics
• +7 more

Manuel Kleiner is an Associate Professor in the Department of Plant and Microbial Biology at North Carolina State University. His research focuses on metabolic and physiological interactions in host-microbe systems, microbial ecology, and the application of metagenomics and high-resolution mass spectrometry to study complex microbiota-host relationships. Research Highlights: Development of metaproteomic techniques to quantify protein expression, analyze community structure via biomass contributions, and track isotope ratios to understand nutrient flow between hosts and microbiota. Creator of the "transductomics" approach to detect horizontal gene transfer via viral transduction in intestinal systems. Collaborates with researchers such as Theriot, Sartor, Sheikh, Ziegler, and Gonzalez. Recent Trends: His 2025 publications emphasize gut microbiome dynamics, maize root-microbe interactions, transplantation biology, and advancements in metaproteomic methodologies. Key themes include dietary impacts on microbiota, stable isotope probing, and synthetic microbial communities for plant and human health. Laboratory Tools: The Kleiner Lab utilizes quantitative metagenomics, high-resolution mass spectrometry, and computational modeling to dissect functional interactions in symbiotic systems across diverse environments, from marine organisms to agricultural crops.