Find Academic Supervisors

• Metabolomics
• Lipidomics
• Proteomics
• +5 more

Dr. Thomas O. Metz is a Laboratory Fellow and Chief Science Officer in the Biological Sciences Division at Pacific Northwest National Laboratory (PNNL). He leads research in metabolomics, lipidomics, and proteomics, with a focus on developing advanced mass spectrometry methods and computational approaches for metabolite identification. His work spans chronic diseases (e.g., type 1 diabetes), infectious diseases, and environmental exposures, contributing to over 200 publications. Education: BS in Biology, Frostburg State University BS in Chemistry, San Jose State University PhD in Chemistry, University of South Carolina Postdoctoral fellowship in mass spectrometry, PNNL His research integrates multi-omics technologies to uncover disease mechanisms, emphasizing lipid signaling, biomarker discovery, and host-pathogen interactions. Recent work explores mass spectrometry innovations for exposomics and viral infection responses, with consistent themes of data standardization and computational tool development. Scientific Awards: Pathways to Excellence Award, PNNL (2024, 2023, 2022) Paper of the Year Award, PNNL (2021, 2019, 2017) Major Proposal Award, PNNL (2018, 2017) Keynote Speaker, Metabolomics Society (2017) Patent/Software Awards, PNNL (2016, 2014, 2014) Outstanding Performance Awards, PNNL (2012, 2008, 2007, 2006) He directs major initiatives like the PNNL m/q Initiative and co-leads the NEXUS ChemBio Analytical Sciences Hub. Grants include NIH programs (Undiagnosed Diseases Network, Metabolomics Program). His team develops cutting-edge analytical platforms at PNNL’s Environmental Molecular Sciences Laboratory.

Justin TeeguardenView profile

Research Fellow

• Computational Toxicology
• Exposure Science
• Nanoparticle Toxicology
• +2 more

Justin Teeguarden is a Lab Fellow at Pacific Northwest National Laboratory (PNNL) and serves as Chief Science Officer for the Environmental Molecular Sciences Laboratory (EMSL) User Program. He holds a joint appointment in the Department of Environmental and Molecular Toxicology at Oregon State University, where he leads the NIH Superfund research program. With a PhD in Toxicology (University of Wisconsin-Madison, 1999) and BS in Biochemistry (UC Davis, 1990), his research integrates computational modeling, toxicology, and exposure science. His work focuses on three core areas: 1) Computational modeling of chemical transport and biological interactions; 2) Nanoparticle fate and toxicity paradigms; and 3) Quantitative assessment of environmental estrogens in humans. This spans interdisciplinary domains including nanotoxicology, pharmacokinetics, and molecular epidemiology. Teeguarden's publications emphasize mechanistic toxicology, computational dosimetry, and multi-omics approaches. Recent work explores circadian biology, aerosol toxicity, and high-throughput exposure assessment, frequently employing advanced mass spectrometry and computational frameworks. As PI of the NIH Superfund program, he coordinates translational research on environmental contaminants. He maintains extensive professional service, including EPA advisory roles, National Academies committees, and editorial positions for Computational Toxicology and Nanotoxicology .

Moritz KinzelView profile

Researcher

• Building Archaeology
• Neolithic Architecture
• Heritage Conservation
• +7 more

Dr. Moritz Kinzel serves as an External Researcher in the Department of Cross-Cultural and Regional Studies at the University of Copenhagen's Faculty of Humanities. His research focuses on building archaeology and Neolithic architecture, with extensive fieldwork across the Middle East including significant projects at Göbekli Tepe (Turkey) and Shkarat Msaied (Jordan). PhD in Building Archaeology (Dr. Ing.), Technical University of Berlin (2011) M.Sc. in Heritage Conservation, Technical University of Berlin (2006) Diplom Ingenieur in Architecture, Beuth Hochschule für Technik (2001) Dr. Kinzel's primary research encompasses Building Archaeology, Neolithic Architecture, Heritage Conservation, and Digital Archaeology methodologies. His work integrates traditional architectural analysis with cutting-edge digital techniques including 3D scanning, photogrammetry, and AR/VR applications. He has developed innovative approaches to documenting ancient structures through his involvement with the ABACUS 2.0 photogrammetry system and has pioneered the use of graphic novels for archaeological outreach through the Prehistory Graphic Outreach Initiative. Analysis of his 15 most recent publications reveals consistent focus on Neolithic architectural practices, particularly at Göbekli Tepe and Shkarat Msaied sites. His work demonstrates strong interdisciplinary connections between architectural history, digital humanities, and heritage conservation, with increasing emphasis on digital documentation methods and public engagement strategies since 2019. Key thematic threads include architectural modification processes, monumentality studies, and the application of proteomics to ancient bone analysis. Dr. Kinzel actively contributes to major international projects including the HeAT (Heritage and Threat) initiative addressing heritage preservation in crisis situations across Syria, Northern Iraq, Poland, Romania, and Italy. His collaborative approach is evident through extensive international partnerships reflected in his research output spanning multiple countries and institutions. His outreach efforts include the Prehistory Graphic Outreach Initiative producing graphic novels based on Shkarat Msaied research, and the HeAT project developing practical manuals for heritage threat management. Dr. Kinzel maintains active participation in academic discourse through conference presentations, peer review activities, and media engagement to disseminate findings from his Middle Eastern archaeological projects.

Bobbie-Jo Webb-RobertsonView profile

Clinical Professor

• Statistics
• Machine Learning
• Bioinformatics
• +5 more

Bobbie-Jo Webb-Robertson serves as Division Director and Chief Scientist of computational biology in the Biological Sciences Division at Pacific Northwest National Laboratory (PNNL). She holds multiple academic appointments including Clinical Volunteer Professor at the University of Colorado Anschutz Medical Campus, Courtesy Assistant Professor at the University of Florida, and Clinical Associate Professor at Oregon Health and Sciences University. Dr. Webb-Robertson earned her PhD in Engineering Systems from Rensselaer Polytechnic Institute in 2002, an ME in Statistics from the same institution in 2000, and a BA in Mathematics from Oregon State University in 1997. With over 20 years of experience in statistics and data science, she has established herself as a leader in computational biology with an h-index of 30 and more than 100 publications. Her research focuses on developing and applying advanced statistical and machine learning methods to address challenges associated with large and complex omics data. She specializes in mass spectrometry-based omics data analysis, statistical data integration, predictive modeling, and biomarker discovery. Her work has significant applications in biomedical research, particularly in understanding type 1 diabetes through multi-omics approaches. Dr. Webb-Robertson's recent publications demonstrate a strong trajectory in type 1 diabetes biomarker discovery, multi-omics data integration, and the application of machine learning to biological problems. Her work spans proteomics, metabolomics, and transcriptomics with a focus on developing computational tools that can integrate multiple data types for improved biological insights. Chauncey and Doris Starr Graduate Fellowship, 1997 GE Future Faculty Scholarship, 1999-2000 National Science Foundation Program in Mathematics and Molecular Biology Fellowship, 1999-2001 HPC Analytics challenge in biology first place team member, 2007 Spirit of nPOD award from the Network for Pancreatic Organ Donors with Diabetes Dr. Webb-Robertson serves in various editorial and advisory roles including Executive Editor for the Journal of Proteomics and Genomics Research, Review Editor for Frontiers in Artificial Intelligence, Scientific Advisory Board Member for the Juvenile Diabetes Research Fund IBM Machine Learning Project, and member of the American Statistical Association. She actively contributes to the scientific community through these service roles while maintaining a productive research program focused on computational methods for biological data analysis. Her laboratory develops computational tools for multi-omics data analysis with particular emphasis on applications in type 1 diabetes research. She leads a team that integrates expertise in statistics, machine learning, and biological domain knowledge to tackle complex biomedical problems, with a focus on biomarker discovery and early disease prediction.

Holly NanceView profile

Associate Professor

• Conservation Genetics
• Population Genetics
• Epigenetics
• +5 more

Dr. Holly Nance serves as Associate Professor of Biology at the College of Coastal Georgia, where she has taught for five years following her PhD in Biological Sciences from Clemson University with a focus on population genetics and conservation management. Her research expertise spans: Conservation Genetics Population Genetics Epigenetics Environmental DNA (eDNA) Seafood Mislabeling Bioinformatics She actively mentors undergraduates in conservation-focused molecular research and leads the SEA PHAGES bioinformatics course where students annotate novel bacteriophage genomes. Her teaching portfolio includes Cell and Molecular Biology, Genetics, and introductory biology courses emphasizing hands-on laboratory techniques and genomic/proteomic software applications to prepare students for molecular biology careers. Dr. Nance's educational approach centers on developing student-led research projects and practical skill acquisition through course-based genomic initiatives like the national SEA PHAGES program, fostering undergraduate engagement in cutting-edge conservation science.

Raed KhashanView profile

Associate Professor

• Computational Medicinal Chemistry
• In-Silico Drug Design and Discovery
• Artificial Intelligence
• +6 more

Dr. Raed Khashan is an Associate Professor in the Pharmaceutical Sciences Division at Long Island University. He holds a Ph.D. in Pharmaceutical Sciences from the University of North Carolina at Chapel Hill, an M.S. in Pharmaceutical Sciences from The University of Texas at Austin, and a B.S. in Pharmacy from Jordan University of Science and Technology. As a licensed pharmacist with over ten years of community pharmacy experience, he bridges theoretical concepts with real-world applications in his teaching. His interdisciplinary research spans three core areas: Computer-Aided Drug Design using machine learning and molecular modeling Molecular Dynamics Simulation for mechanistic studies of biological processes Development of computational algorithms for cheminformatics and bioinformatics challenges This work integrates chemistry, biology, physics, and computer science to advance therapeutic discovery. Dr. Khashan's publications demonstrate consistent focus on computational method development, with recent work emphasizing AI-driven drug discovery (e.g., BMX inhibitors for cancer) and CRISPR/Cas molecular mechanisms. His articles frequently appear in journals like Molecular Informatics , Journal of Cheminformatics , and Proteins: Structure, Function, and Bioinformatics . He has received significant recognition including: AACP Teacher of the Year Award CCG Excellence Award for computational method innovation Multiple teaching nominations (Lindback, Bright Idea) Research awards from USciences and King Faisal University He actively mentors students in computational projects, with current advisees including Faranak Dinehkaboudi, Nadimbhai Vahora, and Amnah Alalmaie. As director of the Khashan Laboratory for Molecular Modeling & Simulation, he leads initiatives in CADD and algorithm development.

Stacy MalakerView profile

Assistant Professor

• Glycoproteomics
• Mass Spectrometry
• Mucin Biology
• +5 more

Dr. Stacy Malaker is an Assistant Professor in the Department of Chemistry at Yale University whose research focuses on developing innovative methods to study mucins - densely O-glycosylated extracellular proteins with important but poorly understood roles in numerous diseases. Dr. Malaker maintains multiple affiliations within Yale University: Department of Chemistry (Primary) Yale Cancer Center Cancer Immunology Program Plant Molecular Biology WHRY Pilot Project Program Investigators Yale Combined Program in the Biological and Biomedical Sciences (BBS) Her educational background includes a B.S. from the University of Michigan in Biochemistry and Anthropology-Zoology, a PhD in Chemistry from the University of Virginia under Professor Donald Hunt, and an NIH postdoctoral fellowship in Professor Carolyn Bertozzi's laboratory at Stanford University before joining Yale in 2021. Dr. Malaker's research centers on overcoming the technical challenges of studying mucins, which resist standard proteomic workflows due to their dense O-glycosylation. Her lab has developed three complementary approaches: characterizing mucin-digesting enzymes (mucinases), improving ionization techniques for hydrophilic glycopeptides, and creating specialized software for glycopeptide analysis. These methods enable the study of mucins in biological contexts related to cancer, cystic fibrosis, inflammatory bowel disease, and other conditions. Analysis of Dr. Malaker's recent publications reveals a strong focus on method development in glycoproteomics, with applications spanning biochemistry, analytical chemistry, and disease biology. Her work has appeared in high-impact journals including Cell, Journal of Biological Chemistry, and Molecular & Cellular Proteomics. Dr. Malaker has received significant recognition for her early-career contributions: Early Career Researcher Manuscript Competition Finalist (2021) Chemistry Biology Interface Division Horizon Prize from Royal Society for Chemistry (2021) Early Career Faculty Award from ASBMB (2021) Rising Stars in Proteomics and Metabolomics: 40 under 40 (2021) Her laboratory provides interdisciplinary training at the chemistry-biology interface, with opportunities for students to develop expertise in mass spectrometry, glycoproteomics, and protein biochemistry while addressing fundamental biological questions related to human health and disease.

Juri RappsilberView profile

Professor

• Proteomics
• Mass Spectrometry
• Protein Structure
• +4 more

Prof. Juri Rappsilber is a Professor at the Technical University of Berlin's Institute of Biotechnology and Group Leader of Research Unit E in the UniSysCat Cluster of Excellence. His affiliations include Visiting Professorship at Kyoto University (2017, JSPS Fellow) and Senior Research Fellowships at the Wellcome Trust (2009-2019). He leads the Rappsilber Laboratory, focused on developing mass spectrometry technologies to study protein structure and interactions. Research interests center on proteomics , crosslinking mass spectrometry , and protein-network analysis . Key areas include: Functional protein networks through co-regulation studies Chromatin dynamics and mitotic chromosome composition In-cell structural proteomics integrating deep learning Development of bioorthogonal catalysis for medical applications His publication record demonstrates consistent output in high-impact journals, with recent work emphasizing: Structural mechanisms of protein complexes (γ-tubulin, condensin) Crosslinking MS methodology innovation and error control Integration of AI with experimental structural biology Catalytic processes in bioinorganic systems Awards and honors: EMBO Membership (2021) BSPR Lectureship (2014) Einstein Professorship (2011) Wellcome Trust Senior Research Fellow (2009-2019) Marie Curie Excellence Fellow (2005-2010) He actively advises doctoral students, including DAAD Hilde-Domin Program recipients, and secures substantial funding through ERC Synergy Grants, Wellcome Trust awards, and national initiatives. The lab focuses on developing anti-cancer therapeutics and sustainable chemistry solutions while pursuing Green Lab Certification.

• Resilience Research
• Stress Models
• Neurobiology
• +3 more

Marianne Müller is a Professor for Psychiatry and Psychotherapy at the University Medical Center of Johannes Gutenberg University Mainz, leading a research group focused on resilience mechanisms. Her interdisciplinary team integrates human medicine, natural sciences, and translational research to address fundamental questions in stress resilience. Her research centers on resilience to stressful life events , with two primary pillars: (1) developing animal models for stress/resilience and (2) elucidating neurobiological mechanisms of resilience-promoting interventions. Key projects include characterizing resilience in mouse models, stress inoculation paradigms, DRR1 protein dynamics, ketamine's molecular actions, and dynamic system analysis tools. The group's publication trends reveal strong emphasis on translational neuroscience (71% of articles), with subfields spanning rapid-acting antidepressants, glial cell biology, and stress-induced metabolic-cognitive interactions. Methodologically, they prioritize proteomics, behavioral phenotyping, and molecular validation in animal models. Müller's leadership includes managing a 6-member research team and securing funding from major sources like DFG and Boehringer Ingelheim Stiftung. Her collaborative network spans Goethe-Universität Frankfurt, Max-Planck-Institut für Psychiatrie, Stanford University, and Emory University. The group operates within the Department of Psychiatry and Psychotherapy, leveraging the University Medical Center's infrastructure for translational work. Current initiatives focus on instrument development for dynamic system analysis (IDSAIR project) and pharmacological modeling of resilience factors.

• Plant Chemistry
• Biochemistry
• Structural Biology
• +5 more

Dr. Joseph Noel serves as Professor and Director of the Jack H. Skirball Center for Chemical Biology and Proteomics at the Salk Institute for Biological Studies, where he holds the Arthur and Julie Woodrow Chair. His research bridges plant chemistry, biochemistry, and structural biology with practical applications for climate change mitigation. Dr. Noel's educational background includes a BS in Chemistry from the University of Pittsburgh at Johnstown, a PhD in Chemistry and Biochemistry from Ohio State University, and postdoctoral training at Yale University, supported by fellowships from the National Science Foundation and National Institutes of Health. His research focuses on plant compounds and evolutionary adaptations, particularly examining suberin (cork) as a natural carbon storage mechanism. Through the Harnessing Plants Initiative, he develops strategies to enhance plants' carbon sequestration capabilities - engineering crop plants to store more carbon in soil via increased suberin production in roots, and studying coastal wetlands that naturally sequester up to 100 times more carbon per unit area than terrestrial ecosystems. His work combines biological assays to test genetic modifications with chemical techniques to replicate plant pathways in laboratory settings. Dr. Noel's significant scientific contributions have been recognized with multiple prestigious awards including being named a Fellow of the American Association for the Advancement of Science (2012), a Howard Hughes Medical Institute Investigator (2005), a Monsanto Biotechnology Fellow (1989), and a Presidential Fellow (1988). As Director of the Jack H. Skirball Center, he leads research on plant biochemistry and structural biology, collaborating with institutions like the San Diego Zoo on conservation efforts. His recent publications (2020-2025) demonstrate continued productivity across enzyme mechanisms, protein interactions, and climate change mitigation strategies, reflecting his unique integration of fundamental biochemical research with practical environmental applications.

Huseyin GUNERView profile

Lecturer

• Bioinformatics
• Computational Biology
• Proteomics
• +7 more

Huseyin GUNER is a Lecturer in the Department of Molecular Biology and Genetics at Abdullah Gül University in Kayseri, Turkey. With a strong background spanning physics, computer science, and molecular biology, he bridges computational approaches with biological research to tackle complex scientific questions. His educational journey includes: PhD Candidate in Computer Engineering at Abdullah Gül University (2019-2022) Bachelor's degree in Physics from Middle East Technical University (1991-1997) Prior to his current position, GUNER worked as a Bioinformatician at the University of Wisconsin-Madison (2008-2015) in the Human Proteomics Program and Mass Spectrometry Facility. His research expertise spans bioinformatics, computational biology, proteomics, and mass spectrometry, with significant contributions to software development for proteome analysis including MASH Suite Pro and the recently developed BrAIn system for brain organoid analysis. His interdisciplinary approach integrates artificial intelligence with molecular biology to address challenges in drug discovery, cancer biology, neuroscience, and stem cell research. Analysis of GUNER's publication record reveals a consistent focus on developing and applying computational methods to biological problems. His work demonstrates expertise in both theoretical algorithm development and practical experimental validation. Recent publications show increasing emphasis on AI applications in neuroscience and continued contributions to proteomics methodology. His research has practical implications for drug discovery, disease modeling, and diagnostic tool development, particularly in areas like inflammatory bowel disease treatment, multiple sclerosis therapy, and cancer immunotherapy. GUNER has published 27 scientific articles that have garnered 9,253 reads and 817 citations, indicating substantial impact in his research areas. His collaborative network spans multiple disciplines and institutions including Johns Hopkins Medicine, Izmir International Biomedicine and Genome Institute, and University of Wisconsin-Madison. As a lecturer, GUNER contributes to academic training in molecular biology and genetics while maintaining an active research program. His unique background in physics, computer science, and molecular biology enables him to approach complex biological problems from multiple perspectives, fostering innovative solutions at the intersection of computational and experimental biology.