Find Academic Supervisors

Hugh ChipmanView profile

Professor

• Statistical Learning
• Data Mining
• Bayesian Methods
• +5 more

Hugh Chipman is a Professor in the Department of Mathematics and Statistics at Acadia University , Canada. He holds a BScH (Acadia), MMath and PhD (University of Waterloo), and is a P.Stat. member of the Statistical Society of Canada. Education: BScH, Acadia University MMath, University of Waterloo PhD, University of Waterloo P.Stat. (Professional Statistician) Research Interests: Dr. Chipman specializes in statistical learning and data mining with applications to complex data structures. Key areas include Bayesian ensemble methods , tree-based models , design of experiments , network analysis , and high-dimensional data problems. He has contributed to drug discovery and functional data monitoring through computational statistics. Recent Talks: His 2024 presentation at UNC Chapel Hill focused on simulation studies for experimental design. Earlier work (2015) addressed big data education at Dalhousie University, while 2011-2014 talks covered active learning and network data mining at institutions like Harvard and MITACS. Scientific Awards: Co-organizer of NSERC-funded workshops Contributed to major statistical learning summer schools (e.g., AARMS 2014) Teaching: Courses include Statistics I and Design and Analysis of Experiments . He maintains software tools like BART (Bayesian Additive Regression Trees) and hybrid hierarchical clustering algorithms.

• Archaeology
• History
• Museum Studies
• +2 more

Hubert Kowalski is a Professor at the Faculty of Archaeology, University of Warsaw, specializing in Warsaw's cultural heritage with focus on the Vistula River archaeology, historical buildings like the Kazimierzowski Palace, and university museum systems. His academic profile combines active teaching duties (with published consultation hours) and interdisciplinary research bridging archaeology, history, and museum studies. Research interests center on urban archaeology of Warsaw across historical periods, particularly the Swedish Deluge era and 17th-century architecture. His work integrates underwater archaeology of the Vistula River, analysis of historical correspondence (including interwar period documents), and studies of academic heritage collections. Key methodologies involve interdisciplinary approaches combining material culture analysis with archival research, environmental history, and museum pedagogy to reconstruct Warsaw's layered historical identity. Analysis of his 2020-2025 publications reveals consistent focus on three interconnected themes: recovery of artifacts during Vistula River low-water events (e.g., 'Archaeological Kilometer of the Vistula'), documentation of university museums and academic heritage collections, and reinterpretation of Swedish Deluge impacts through newly discovered sources. His output demonstrates increasing methodological sophistication through hydrodynamic modeling applications while maintaining deep engagement with Polish cultural identity through material heritage. Scientific Awards: No awards documented in provided materials. Advising and grants: Text contains no references to graduate students supervised or external research funding secured, though extensive publication record suggests independent research leadership. His conference participation (e.g., 'Rome and Barbarians', 'Women’s Perspectives in the Nile Valley') indicates active scholarly networking. Labs and teams: Affiliation with University of Warsaw's Faculty of Archaeology is primary institutional context, with specific connections to museum studies initiatives and Vistula River research groups. The 'Archeologiczny kilometr Wisły' project represents his key collaborative framework for river archaeology.

Kristen W. LynchView profile

Professor

• RNA Biology
• Alternative Splicing
• Alternative Polyadenylation
• +7 more

Kristen W. Lynch, PhD, is the Benjamin Rush Professor of Biochemistry and Chair of the Department of Biochemistry and Biophysics at the Perelman School of Medicine, University of Pennsylvania. She leads research at the Lynch Lab and co-directs the Institute for RNA Innovation , focusing on RNA processing mechanisms in human immune responses. Education: Harvard University (B.A. 1990, Ph.D. 1996) Postdoctoral Training: University of California, San Francisco (1997-2001) Her work bridges RNA splicing , alternative polyadenylation , and gene regulation in immune cells and cancer. She discovered kinase pathways controlling RNA-binding protein (RBP) activity and demonstrated how antigen stimulation and viral infections reprogram splicing networks to modulate immunity. Collaborative studies with oncologists revealed splicing defects phenocopying genetic mutations in leukemias and identified therapeutic vulnerabilities in RNA processing . Her recent publications highlight TREX-2 complex in mRNA export, hnRNP L repressing cryptic exons, and DDX39B structural analysis . Collaborations span RNA-Seq , splicing codes , and epithelial cell post-transcriptional programs . She explores spliceosomal assembly mechanisms and signal-responsive RBPs in T cells and influenza pathogenesis.

• Immunogenomics
• Antibody Engineering
• Computational Biology
• +4 more

Yana Safonova is an Assistant Professor in Computer Science and Engineering at the Huck Institutes of the Life Sciences , Pennsylvania State University. Her research bridges computational biology with immunogenomics. Immunoglobulin Gene Analysis Genome Assembly Methodology Antibody Diversity Bioinformatics Tool Development Her research focuses on immunoglobulin genetics , vertebrate genome assembly , and computational immunology . Recent work includes developing tools for IGH locus reconstruction and analyzing germline gene diversity in model organisms. Key publication trends reveal expertise in antibody engineering , genomic immunology , and bioinformatics pipeline development for immunosequencing and genome analysis .

Darrin P. LundeView profile

Researcher

• Mammalogy
• Taxonomy
• Biodiversity Research
• +3 more

Darrin P. Lunde is a Researcher at the Smithsonian Institution , specializing in the Division of Mammals under the School of Vertebrate Zoology . With over two decades of experience, he has led extensive fieldwork across the Americas, Africa, and Southeast Asia, focusing on mammal collections and species discovery. Education: M.A. in Ecology, Evolutionary Biology and Systematics, City College of New York (2002) B.S. in Animal Sciences, Cornell University (1991) His research interests revolve around mammal taxonomy , biodiversity , and conservation biology . He has described over a dozen new species and contributed to understanding lesser-known mammals globally. His publications highlight integrative taxonomic revisions, morphological studies, and biogeographic patterns. Recent publications span primate morphology , lesser gymnures , atherosclerosis in apes , and Neotropical mammals , showcasing his expertise in species discovery and field biology . Professional Affiliations: Smithsonian Institution, National Museum of Natural History Division of Mammals, Vertebrate Zoology

John ManakView profile

Professor

• Genetics
• Neurobiology
• Genomics

John Manak serves as Professor and Biomedical Sciences Program Director in the Department of Biology at the University of Iowa, conducting research at the intersection of genomics, genetics, and neurobiology. His work employs model organisms including Drosophila and Xenopus to investigate human genetic disorders and develop translational therapies. His academic background includes: PhD from Columbia University Dr. Manak's research focuses on identifying causative mutations for congenital anomalies such as spina bifida, branchio-oto-renal syndrome, renal agenesis, and cleft lip/palate. His lab discovered ISM1 as a critical craniofacial patterning gene and elucidated PRICKLE's role in epilepsy-ataxia syndromes using fly models. Current work explores glial immune responses and oxidative stress pathways in seizure progression, with potential for repurposing anti-inflammatory drugs as novel anti-epileptic therapies. Analysis of his 2019-2023 publications reveals consistent emphasis on copy-number variation analysis in craniofacial disorders and epilepsy mechanisms. Key trends include identification of novel clefting genes (COBLL1, RIC1, ARHGEF38), chromatin organization studies involving Dm-Myb, and translational approaches targeting neuroinflammation. His work bridges fundamental genetic discovery with clinical applications through integrated genomic and physiological analyses. No scientific awards were specified in the source material. As principal investigator, Dr. Manak mentors graduate students and postdoctoral researchers while securing research funding evidenced by his publication record in high-impact journals including Nature, PNAS, and Cell Reports. His leadership extends to directing the Biomedical Sciences Program and contributing to departmental research initiatives. His laboratory maintains active research programs utilizing Drosophila for epilepsy modeling, Xenopus for craniofacial studies, and mammalian systems for neuroprotection research. The lab collaborates extensively with University of Iowa core facilities including the Carver Center for Genomics and Carver Center for Imaging, employing techniques ranging from CRISPR-based gene editing to electrophysiological analysis of neural circuits.

Michael BaudisView profile

Professor

• Bioinformatics
• Tumorgenomics
• Genomics
• +4 more

Michael Baudis is a Professor of Bioinformatics and Tumorgenomics at the Institute of Molecular Biology , Faculty of Science, University of Zurich. He leads the development of the Progenetix database, a global reference for cancer genomic copy number alterations, and contributes to international standards through his membership in the Global Alliance for Genomics and Health (GA4GH) . Research focuses on genomic data representation , cancer subtype classification , and data sharing protocols Key projects include Beacon networks , Phenopackets , and GA4GH standards Email: michael.baudis@uzh.ch His recent work explores short tandem repeat variations , attention-based deep learning for CNAs , and heterogeneity in cancer classifications . Methodological contributions include segment_liftover , CNARA , and pgxRpi for genomic data calibration and analysis.

Paola ArlottaView profile

Professor

• Neuroscience
• Developmental Biology
• Stem Cell Biology
• +3 more

Paola Arlotta is the Golub Family Professor and Chair of the Department of Stem Cell and Regenerative Biology at Harvard University. She is a principal faculty member at the Harvard Stem Cell Institute, an Institute Member at the Broad Institute, and an Associate Member of the Stanley Center for Psychiatric Research. Her career spans groundbreaking work in cortical development and regenerative neuroscience. Education: M.S. in Biochemistry from the University of Trieste, Italy Ph.D. in Molecular Biology from the University of Portsmouth, UK Postdoctoral training in Neuroscience at Harvard Medical School Dr. Arlotta’s research focuses on defining molecular pathways that govern the differentiation of neural progenitors into cortical projection neurons, with a special interest in corticospinal neurons linked to ALS and spinal cord injury. Her lab bridges developmental neuroscience with stem cell engineering to study human-specific cortical development using 3D organoid models, aiming to uncover mechanisms of neurodevelopmental diseases. Scientific Contributions: 2024: Discovery of individual susceptibility to neurotoxicity in brain chimeroids 2024: Microglia’s role in fetal brain inflammation response 2022: Autism risk genes affect asynchronous neuron class development 2019: Reproducible generation of human cortical diversity in organoids Scientific Awards: Elected to the National Academy of Medicine for pioneering brain organoid research Her lab employs advanced techniques like single-cell RNA sequencing, FIN-seq for frozen tissue analysis, and in utero electroporation. She also explores neuronal reprogramming and myelin dynamics across axons, contributing to understanding cortical circuit assembly and repair.

Carole HickmanView profile

Professor

• Marine Biology
• Evolutionary Biology
• Paleontology
• +3 more

Carole Hickman is a Curator and Professor at the University of California Museum of Paleontology (UCMP) within the University of California, Berkeley. Her research focuses on the morphology, function, and evolutionary history of marine gastropods, investigating how biological structures produce complex patterns over time. Using a multidisciplinary approach, Hickman integrates paleontology, evolutionary biology, and biogeography to analyze deep-sea mollusk fossils. Her work emphasizes the sophistication of extinct organisms' adaptive solutions, challenging simplistic notions of evolutionary progress. Key Research Themes: Evolutionary patterns in marine gastropods Paleoecology of deep-water mollusk assemblages Biogeographic analysis of Indo-Pacific species Geological context of Paleogene fossil formations Recent publications highlight systematic studies of bivalves and gastropods from the Keasey Formation (Oregon) and the Indo-West Pacific region. Her research combines anatomical analysis with phylogenetic and geological dating techniques. Contact: caroleh@berkeley.edu . The UCMP collections are accessible during Cal Day open house events at the Valley Life Sciences Building, Berkeley, CA.

Julie HaasView profile

Professor

• Neuroscience
• Computational Neuroscience
• Electrophysiology
• +3 more

Julie Haas is a Professor at Lehigh University investigating neural attention mechanisms through electrical synapses in the thalamic reticular nucleus (TRN). Her research integrates electrophysiology, optogenetics, and computational modeling to decode how inhibitory circuits filter sensory information, with implications for attention disorders. Her educational journey includes a B.A. in Music and Mathematics from Indiana University, a Ph.D. in Biomedical Engineering from Boston University, and postdoctoral training at Harvard University and UC San Diego, supplemented by Computational Neuroscience studies at the Marine Biological Laboratory. Research focuses on electrical synapse plasticity as the core mechanism for attentional selection. The Haas lab examines how dopamine, GABA receptors, and amygdala inputs modulate TRN circuitry using in vitro brain slices and optogenetic tools. Key discoveries include activity-dependent long-term potentiation at electrical synapses and their role in sensory gating, bridging molecular dynamics to circuit-level functions through innovative computational models. Publication analysis reveals a decade-long trajectory from foundational electrical synapse characterization (2012-2015) to neuromodulatory mechanisms (2016-2021) and recent dopamine receptor investigations (2022-2024). This evolution demonstrates increasing complexity in understanding how electrical synapses integrate neuromodulatory signals for attentional control. Funding from NIH, NSF, Whitehall Foundation, and Brain and Behavior Foundation supports her lab's work. She teaches advanced courses including Synapses, Plasticity and Learning (Bios 385/415) and Neurophysiology Laboratory (Bios 278), training next-generation neuroscientists in cutting-edge techniques. The Haas lab operates within Lehigh's neuroscience facilities with specialized electrophysiology rigs, optogenetic systems, and computational resources for multi-scale analysis of thalamic circuitry, currently exploring electrical synapse dysfunction in neurodevelopmental disorders.

• Neuroscience
• Cholinergic System
• Molecular Genetics
• +5 more

Julie Miwa serves as an Associate Professor in the Department of Biological Sciences within the College of Arts and Sciences at Lehigh University. Her research laboratory investigates complex neurobiological processes with a specific focus on the cholinergic system and its regulation through lynx genes. Dr. Miwa's work employs a highly multidisciplinary approach that combines molecular genetics, genetic engineering, electrophysiology, behavioral analysis, and biochemical techniques. Dr. Miwa's research centers on lynx proteins, which function as molecular brakes on nicotinic acetylcholine receptors. Her laboratory generates genetically engineered mouse lines to characterize how these regulatory proteins influence neural function and behavior. Key findings from her research demonstrate that manipulating lynx proteins affects learning capabilities, critical period plasticity, anxiety responses, and neuronal survival. Her work has significant implications for understanding neural adaptation mechanisms and potential therapeutic approaches for neurological conditions. Analysis of Dr. Miwa's publication record reveals a consistent trajectory of research focused on cholinergic regulation, with particular emphasis on lynx proteins and their interactions with nicotinic receptors. Her work spans molecular mechanisms, cellular function, and behavioral outcomes, demonstrating a comprehensive approach to neuroscience research. The publications show increasing sophistication in techniques and expanding applications to understanding neural plasticity, learning mechanisms, and potential relevance to neurological disorders. Dr. Miwa's laboratory actively seeks researchers with expertise in molecular genetics, genetic engineering, behavioral pharmacology, and biochemical techniques. Her research program appears to be well-established with consistent publication output across nearly two decades, indicating sustained funding and productive research operations. While specific grant information isn't provided in the available text, the longevity and productivity of her research program suggest successful grant acquisition and management. The laboratory focuses on investigating how lynx proteins regulate the cholinergic system through multidisciplinary approaches. Current research directions include examining the role of lynx proteins in motor learning, anxiety-related behaviors, and neuronal health during aging. The lab utilizes genetically engineered mouse models combined with electrophysiological, behavioral, biochemical, and microscopic techniques to unravel the complex relationships between molecular regulation and behavioral outcomes.

Rüdiger BielerView profile

Research Professor

• Taxonomy
• Marine Biology
• Evolutionary Systematics
• +5 more

Rüdiger Bieler serves as Curator (Research Professor) in the Integrative Research Center at the Field Museum of Natural History, Chicago, and is a Member of the Committee on Evolutionary Biology at the University of Chicago. His dual institutional affiliation bridges museum-based organismal research with academic evolutionary biology training. His research centers on evolutionary systematics and taxonomy of marine Mollusca, particularly Gastropoda and Bivalvia, integrating morphological, paleontological, and molecular data. Key focus areas include: Development of collections-based research methodologies Large-scale specimen and data management systems Bivalve Assembling-the-Tree-of-Life (BivAToL) initiatives Coral reef restoration ecology in the Florida Keys Marine biogeography and biodiversity assessment His work frequently addresses conservation challenges through systematic frameworks. Bieler's editorial leadership includes significant contributions to PeerJ as Editor (2,100+ contributions) and involvement with WoRMS (marinespecies.org) and MolluscaBase.org. His research infrastructure development supports global taxonomic efforts through digital platforms and specimen databases. Professional leadership roles include past presidency of both the American Malacological Society and the International Society for Malacology (Unitas), reflecting his standing in the malacological community. Current service includes the WoRMS steering committee and chief editorship for MolluscaBase.org. His publication record demonstrates consistent output in marine biodiversity documentation, with recent emphasis on: Discovery of novel anatomical features in mollusks Island biogeography patterns in remote archipelagos Adaptive radiation mechanisms in marine invertebrates Integration of micro-fragmentation techniques for reef restoration Methodological innovations in species diversity estimation and mark-recapture adaptations for taxonomic work represent cross-disciplinary contributions.

Ning YuView profile

Associate Professor

• Artificial Intelligence
• Machine Learning
• Deep Learning
• +6 more

Ning Yu serves as an Associate Professor in the Department of Computing Sciences within the School of Arts & Science at State University of New York Brockport. He earned his Ph.D. in Computer Science from Georgia State University and joined SUNY Brockport in 2017 after serving as a Tenure-Track Assistant Professor at the University of South Carolina Upstate. Georgia State University, Computer Science, Ph.D. Southern Illinois University Carbondale, Computer Science, M.S. Dr. Yu's research spans artificial intelligence, network and information security, big data analytics, deep learning, and cloud computing with significant applications in bioinformatics. His work demonstrates a clear progression from foundational AI and security research toward specialized applications in healthcare and energy systems. The most recent publications show increased focus on graph-based deep learning approaches for biomedical problems, particularly in cancer genomics and drug response prediction. His scholarly impact includes over 40 publications in prestigious venues including ACM/IEEE Transactions, BMC, PLoS, and Information Sciences. The publication trend reveals consistent output with increasing emphasis on interdisciplinary applications, particularly at the intersection of AI and biomedical research. Teacher of The Year, School of Science and Art, SUNY Brockport 2022-2023 Influential Professor 2022, SUNY Brockport, Fall 2023 Provost Post-Tenure Scholarship Award, $3,500, SUNY Brockport, Spring 2024 Google Research Credits Grants (2018, 2020-2021) WORLDWIDE TOP 10 FINALISTS, IBM 2017 Watson Analytics Global Competition As an educator, Dr. Yu has mentored numerous undergraduate researchers who have presented at national conferences including NCUR and SURC. He founded SUNY Brockport's first ACM SIGAI Student Chapter and has secured significant funding including a multi-campus SUNY IITG grant for AI education development. His research group actively recruits students for projects involving cloud development (Azure/GCP/AWS), CI/CD, Docker/K8s, and software architecture. Prior to academia, Dr. Yu accumulated 10 years of professional experience in software development and system networking with certifications from Cisco, Microsoft, and Google.

Felix Claus MüllerView profile

Researcher

• Economic Geography
• Spatial Innovation Research
• Value Creation
• +3 more

Dr. Felix Claus Müller serves as a Science Communication Officer at the Leibniz Institute for Research on Society and Space (IRS) since January 2019, working within the Science Support and Communications department (WUK). His responsibilities include managing press contacts, creating in-house publications like "IRS aktuell," overseeing institute-wide social media activities, and developing communication content for the IRS website. Müller earned his doctorate in economic geography from Freie Universität Berlin in 2016, with research focusing on spatial innovation and economic value creation. His academic background includes studies in regional studies, geography, and regional development at the University of Potsdam, the University of Bucharest, and Newcastle University's Centre for Urban and Regional Development Studies (CURDS). Müller's research interests span economic geography, spatial innovation research, value creation processes, geographies of dissociation, and the fur fashion industry. His work examines how value is created through spatial arrangements, particularly in global commodity chains where certain elements are deliberately made invisible. Recent publications explore topics including German-Argentine economic relations, science-policy interfaces, urban transformation, and ethical consumption narratives. His scholarly output shows a clear trajectory from studying innovation processes in biotechnology to examining value creation in fashion and fur industries, with a consistent focus on spatial dimensions of economic activities. Müller's work bridges theoretical geographic concepts with practical applications in policy and industry contexts, particularly through his examination of "geographies of dissociation" - how value is created by making certain elements of production invisible. Müller has contributed to significant research projects including the Repository for Policy Documents (REPOD) and "Geographies of Dissociation: The Social Construction of Values from a Spatial Perspective." His work has been presented at major international conferences including the Global Conference on Economic Geography, RGS-IBG Annual Conference, and American Association of Geographers meetings. As Science Communication Officer, Müller bridges academic research and public engagement, translating complex geographic and economic concepts into accessible formats while maintaining scholarly rigor. His dual expertise in economic geography research and science communication creates a unique profile that connects theoretical academic work with practical policy applications and public understanding.

Vijay KumarView profile

Assistant Professor

• Tumor Immunology
• Immunotherapy
• Innate Immunity
• +3 more

Vijay Kumar, PhD, serves as an Assistant Professor in the Department of Surgery at Morehouse School of Medicine, where he directs the Laboratory of Tumor Immunology and Immunotherapy. His research focuses on tumor immunology and immunotherapy with emphasis on innate immune mechanisms and the tumor microenvironment. His academic background includes: PhD in Immunology and Medical Microbiology from Panjab University MSc in Toxicology from Hamdard University BSc in Botany, Zoology, and Chemistry from DAV College Dr. Kumar's research centers on understanding immune dysregulation in cancer, particularly through Toll-like receptors and macrophage biology. His work explores how inflammation and immune homeostasis influence tumor progression, aiming to develop novel immunotherapeutic strategies. Recent editorial contributions demonstrate expertise in translating fundamental immunological concepts into clinical applications, with significant focus on methodological advances in immune protocols. His publication record (2017-2024) reveals consistent scholarly output in immunological mechanisms, showing evolution from foundational topics like sepsis and vaccines toward contemporary cancer immunology. Key trends include historical perspectives on immunological discoveries (e.g., 140 years of macrophage research, 30 years of Toll-like receptor studies) and methodological frameworks for immune homeostasis in tumor contexts. No scientific awards were mentioned in the provided documentation. Information regarding student advising, grant funding, or specific mentorship activities was not provided in the available text, though his faculty position implies involvement in academic supervision within the Department of Surgery. Dr. Kumar leads the Laboratory of Tumor Immunology and Immunotherapy, which investigates immune cell interactions within the tumor microenvironment. The lab's work integrates historical immunological perspectives with modern therapeutic approaches, focusing on restoring immune homeostasis as a strategy for cancer treatment.