جستجوی استاد راهنمای دانشگاهی

Ting Lu is an Associate Professor at the University of Illinois at Urbana-Champaign in the School of Biomedical and Translational Sciences, focusing on microbial synthetic biology and systems biology. Their research bridges biology, engineering, and physics to reprogram cellular functionalities through gene regulatory networks. Ph.D. in Biophysics, University of California at San Diego (2007) B.S. in Physics, Zhejiang University (2002) Ting Lu's work explores microbial ecosystems, synthetic gene circuits, and their applications in biotechnology and medicine. By combining experimental approaches with mathematical modeling, they investigate bacterial communication networks, metabolic pathways, and spatial dynamics in microbial communities. Selected research trends include microbial consortia engineering for bioremediation and bioproduction, complexity reduction in microbiomes, and predictive modeling of synthetic gene networks. Their publications span high-impact journals such as Nature Communications , Nature Chemical Biology , and eLife . Fellow, American Institute for Medical and Biological Engineering (2022) Future Insight Prize (2021) Donald Biggar Willett Faculty Scholar (UIUC) (2020) NIH Maximizing Investigators' Research Award (2019) NSF CAREER Award (2015) AHA National Scientist Development Grant (2012) Ting Lu's lab has received grants from NIH, NSF, ONR, and industry partners. They offer undergraduate research opportunities in synthetic and systems biology, and teach advanced courses such as BIOE 430 - Intro Synthetic Biology and BIOE 432 - Systems Biology .

• Synthetic Biology
• Systems Biology
• Quantitative Biology
• +۵ مورد دیگر

Dr. Vakil Takhaveev is a Lecturer at ETH Zurich's Department of Health Sciences and Technology, within the Institute of Food, Nutrition and Health. His research focuses on DNA damage mechanisms, aging, cancer, and neurodegeneration, with particular emphasis on developing novel DNA-damage-sequencing methods like click-code-seq and TRABI-Seq . He investigates anticancer drug action (e.g., trabectedin), aging clocks using DNA oxidation profiling, and stress-induced carcinogenesis. His work integrates multi-omics approaches and advanced sequencing techniques. Research Directions: Novel DNA-Damage-Sequencing Methods: Developed click-code-seq and TRABI-Seq for genomic mapping of DNA lesions and repair dynamics. Anticancer Drug Action: Explored mechanisms of trabectedin and other chemotherapeutics, linking DNA repair vulnerabilities to therapy resistance. Aging Clocks: Created DNA oxidation-based biomarkers for biological aging using genome-wide profiling in human and mouse models. Stress-Induced Pathologies: Studies metabolic and DNA damage links to early tumorigenesis and neurodegeneration. Awards & Recognition: 2025 Public Award Winner in PIs of Tomorrow competition 2024 ETH Zurich Career Seed Award Best presentation awards (Swiss Chemical Society, American Chemical Society) Grants & Collaborations: Impetus grants for aging clock development Swiss Chemical Society and American Chemical Society fellowships Labs & Teams: Leads research on DNA damage and aging mechanisms at ETH Zurich, collaborating with international groups in oncology and toxicology.

• DNA Damage and Repair
• Aging Mechanisms
• Cancer Biology
• +۶ مورد دیگر

Paul O'Toole is a Professor of Microbial Genomics and Principal Investigator at the APC Microbiome Ireland, University College Cork. His research focuses on the gut microbiome's role in health, aging, and disease, particularly in the context of diet and probiotics. He leads projects like the ELDERMET study on elderly nutrition and the NU-AGE project exploring Mediterranean diets' anti-aging effects. He holds a BA (Mod.) from Trinity College Dublin and a PhD from Lund University, with postdoctoral training in Canada and New Zealand. Key grants include studies on dairy-derived microbiota, probiotic strain improvement, and microbiome analysis in aging populations. He has published extensively on Lactobacillus genomics, gut-brain interactions, and microbiome-driven health outcomes. His work bridges fundamental microbiology with clinical applications, emphasizing translational research. Scientific highlights include discovering microbiome links to cognitive decline, demonstrating dietary modulation of gut microbes to combat obesity, and identifying keystone species in healthy aging. He advocates for sustainability in conservation and food systems, reflecting his interdisciplinary approach to global health challenges.

• Microbial Genomics
• Gut Microbiome
• Aging and Healthy Aging
• +۴ مورد دیگر

Tanja Narancic is an Assistant Professor at the School of Biomolecular and Biomedical Science at University College Dublin (UCD). She is also an academic collaborator at the Bioeconomy Research Centre BiOrbic, where she coordinates multiple research projects among PIs, PostDocs, PhD students, and designs projects proposed by industrial partners. Dr. Narancic earned her PhD in Applied Microbiology from the University of Belgrade, Serbia in 2012, followed by postdoctoral research at the Institute of Molecular Genetics and Genetic Engineering in Belgrade. In 2013, she joined University College Dublin as a Postdoctoral Research Fellow under Prof. Kevin O'Connor, where she investigated microbial metabolic pathways using proteomics, metabolomics, and synthetic biology tools as part of FP7 and H2020 projects. She became a Research Fellow at BiOrbic in 2019 before advancing to her current position as Assistant Professor. Her research focuses on elucidating bacterial metabolism and leveraging synthetic biology tools to exploit bacteria for producing high-value products. Key research areas include: Proteomics, Metabolomics, and Transcriptomics for microbial pathway analysis Metabolic engineering for bioproduction Biocatalysis and enzyme optimization Protein engineering and purification Polyhydroxyalkanoate (PHA) production from waste streams Plastic upcycling and biodegradation technologies Dr. Narancic's publication record demonstrates a strong focus on converting plastic waste into valuable biodegradable materials through innovative biotechnological approaches. Her recent work has centered on developing microbial systems for upcycling polyethylene terephthalate (PET), polyolefins, and other recalcitrant plastics into polyhydroxyalkanoates (PHAs) and other high-value products. She has made significant contributions to understanding the metabolic pathways involved in plastic monomer conversion and has developed engineered strains with enhanced capabilities for plastic upcycling. As a principal investigator, Dr. Narancic leads multiple significant research projects including the Ad Astra Studentship (2023-2028), the UPLIFT project on sustainable plastics for food packaging (2021-2025), and the PROMOFER project (2024-2028) on optimizing PHB production. She also serves as a reviewer for numerous prestigious journals including Enzyme and Microbial Technology, Journal of Applied Microbiology, and Microbial Biotechnology. Her teaching portfolio includes coordination of multiple modules such as Bioprocessing, Metabolism and Disease, and SynBio for Bioeconomy, demonstrating her commitment to educating the next generation of scientists in both fundamental and applied aspects of biomolecular science.

• Microbiology
• Biochemistry
• Synthetic and systems biology
• +۸ مورد دیگر

Dr. Jeremy Guest is the Levenick Professor in Civil and Environmental Engineering (and courtesy appointment in Chemical & Biomolecular Engineering) at the University of Illinois Urbana-Champaign (UIUC). He serves as Associate Director for Research at the Institute for Sustainability, Energy, and Environment (iSEE) and leads the Center for Advanced Bioenergy and Bioproducts Innovation (CABBI). His research focuses on advancing circular bioeconomies through sustainable sanitation systems, resource recovery from wastewater, and biofuel/bioproduct development from lignocellulosic biomass. Guest's work emphasizes Quantitative Sustainable Design (QSD) methodologies to bridge engineering innovation with policy and investment decisions. Education: PhD in Environmental Engineering (University of Michigan, 2012); MS (Virginia Tech, 2007); BS (Bucknell University, 2005). Research interests include wastewater treatment innovation, nutrient recovery, bioenergy systems design, and sustainable agriculture practices. Key contributions include the EcoRecover phosphorus recovery process, the QSDsan modeling platform, and leadership in CABBI's $262.5M DOE-funded initiative. Guest has secured funding from NSF, US EPA, USDA, and the Bill & Melinda Gates Foundation. Recognitions include the NSF CAREER Award, 2021 James J. Morgan Early Career Award, and the Paul L. Busch Award. He advises over 15 graduate students and leads multiple high-impact projects like the NEWgenerator sanitation system and oilcane biorefinery integration. Lab/Group: Guest Research Group focuses on experimental, computational, and policy-oriented research to solve global sustainability challenges. Current projects address algae-based wastewater treatment, fecal sludge management in low-income regions, and precision fermentation systems development.

• Circular Bioeconomy
• Wastewater Treatment
• Resource Recovery
• +۵ مورد دیگر

C. Perry Chou is a full professor in the Chemical Engineering Department at the University of Waterloo, with a cross-appointment in Biology. He holds a BSc and MSc from National Taiwan University and a PhD from Rice University, all in Chemical Engineering. His research focuses on integrating biochemical, genetic, and metabolic engineering strategies to enhance biomanufacturing using microbial cell factories. Key areas include recombinant protein production, microbial biotechnology, and biofuel development. Education: PhD in Chemical Engineering, Rice University (1995) MSc in Chemical Engineering, National Taiwan University (1987) BSc in Chemical Engineering, National Taiwan University (1984) Research Interests: Dr. Chou’s work spans biochemical engineering, bioprocessing, and metabolic engineering. He develops strategies for microbial strain construction, fermentation optimization, and bioproduct purification. His research bridges fundamental biological sciences with applied engineering to advance biomanufacturing. Publications: His 90+ peer-reviewed articles highlight contributions to strain engineering, CRISPR-Cas9 tools, and microbial production of chemicals like 5-aminolevulinic acid and propionate. Recent trends emphasize nanomaterial applications (e.g., graphene oxide) and sustainable biofuel pathways. Awards: Canada Research Chair (Canada) 1000-talent Award (China) Advising & Grants: Dr. Chou actively mentors graduate students and contributes to editorial roles at journals like Biotechnology Advances and Scientific Reports . He teaches courses such as CHE 161 (Engineering Biology) and CHE 562 (Advanced Bioprocess Engineering). Labs/Teams: Collaborates with interdisciplinary teams to advance bioprocess development, though specific lab names are not explicitly mentioned in the text.

• biochemical engineering
• bioprocessing
• biomanufacturing
• +۷ مورد دیگر

Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.

• Plant-microbe interactions
• Biomolecular engineering
• Systems biology
• +۴ مورد دیگر

Dr.-Ing. Steffen Klamt leads the Research Group 'Analysis and Redesign of Biological Networks' at the Max Planck Institute for Dynamics of Complex Technical Systems in Magdeburg, Germany, where he has been employed since 1998. He received his Diplom-Systemwissenschaftler degree from the University of Osnabrück in 1998 and his Dr.-Ing. from the University of Stuttgart in 2005. His research focuses on computational systems biology with emphasis on metabolic engineering, biochemical networks analysis, and bioprocess optimization. He develops computational tools like CellNetAnalyzer for network analysis and StrainDesign for metabolic engineering applications. Key research areas include constraint-based modeling, minimal cut sets analysis, and dynamic optimization of metabolic processes. His recent publications demonstrate strong focus on multi-stage bioprocess optimization, enzyme cascade engineering, and novel strain development strategies for chemical production. Common themes include ATP manipulation strategies, thermodynamic constraints in metabolism, and integration of experimental data with computational models. Scientific Awards: Ernst Dieter Gilles Lecture Award Ernst Dieter Gilles Fellowship He leads a research group developing computational methods for metabolic network analysis and maintains collaborations with experimental groups for model validation and application. The group develops open-source software tools widely used in systems biology research.

• Metabolic Engineering
• Systems Biology
• Computational Modeling
• +۲ مورد دیگر

Susie Dai is a Professor in the Department of Chemical and Biomedical Engineering at the University of Missouri, with a laboratory located at the Bond Life Sciences Center. Her research bridges chemistry, biology, and engineering to address critical environmental and sustainability challenges. Education: PhD in Chemistry from Duke University; Certificate in Biomedical Engineering from Duke University; Certificate in Regulatory Science from Texas A&M University; BS in Chemistry from Fudan University Dr. Dai specializes in biological and material engineering, carbon waste conversion, contaminant remediation, and synthetic biology. She is developing RAPIMER, a lignin-based fungal scaffold for PFAS removal, and pioneering electro-microbial systems to convert CO2 into bioplastics and biofuels. Her work focuses on scalable, sustainable solutions for environmental pollutants and carbon utilization. Recent research trends include creating biomimetic materials for sustainable packaging, optimizing lignocellulosic biorefineries, and designing lignin-derived photocatalysts. She leads projects funded by Tito's Handmade Vodka's philanthropic arm for PFAS remediation and collaborates with the NSF Engineering Research Center CURB at Washington University in St. Louis. At Mizzou, Dai integrates engineering and life sciences, leveraging both Mizzou Engineering and Bond Life Sciences Center's resources. Her interdisciplinary approach combines electrochemistry, microbial engineering, and social impact analysis to advance circular bioeconomy solutions.

• PFAS Remediation
• CO2 Conversion
• Synthetic Biology
• +۶ مورد دیگر

Eric W. Schmidt is a Distinguished Professor of Medicinal Chemistry at the University of Utah, with adjunct appointments in Biological Sciences and Chemistry. His research focuses on natural products chemistry, biosynthesis, synthetic biology, and pharmaceutical applications of marine animal microbiomes. University of California, San Diego (BS, PhD) Research areas include: Biosynthesis in animals and their microbiomes Synthetic biology approaches to chemical engineering Drug design from marine natural products Metagenomic analysis of symbiotic relationships Neuroactive compound discovery Antibiotic development against resistant pathogens His lab has pioneered methods for: Biosynthetic gene cluster identification Heterologous expression in E. coli Enzymatic modification of peptides Chemical analysis of marine invertebrates Recent publications highlight discoveries in: Marine animal chemical defense mechanisms Evolution of biosynthetic pathways Antibiotic resistance profiling Ionic channel-targeting compounds Peptide macrocyclization techniques Lipid-polyketide biosynthesis continuum Email: ews1@utah.edu Honors include: Distinguished Professor recognition

• Natural Products Chemistry
• Biosynthesis
• Synthetic Biology
• +۵ مورد دیگر

Dr. Bob Beitle Jr. is a Professor of Chemical Engineering and Senior Associate Vice Chancellor for Research and Innovation at the University of Arkansas. He joined the department in 1993, earned tenure in 1998, and was promoted to Full Professor in 2006. His research spans biochemical engineering , bioseparation , fermentation , and adaptive technology for the disabled , with significant work on protein purification, catalytic nanoparticles, and sustainable bioprocesses. Education: BS, MS, PhD in Chemical Engineering from the University of Pittsburgh (1987, 1991, 1993) Dr. Beitle's research combines experimental and computational approaches, focusing on peptide-directed nanoparticle synthesis and biocatalysis . His recent publications highlight advancements in MOF-based separations , CO2 capture materials , and viral detection platforms . He has secured grants like the CAREER Award and led projects in industrial partnerships and student development . Scientific contributions include multiple patents in bioseparation and software interfaces. Awards span decades: teaching honors (1988–2007) and mentorship recognition . He serves on the Cell and Molecular Biology Program Advisory Committee and the Executive Committee for the Biochemical Technology Division of ACS . Lab initiatives involve genomic data-driven affinity tail design and membrane-assisted fermentation systems .

• Biochemical Engineering
• Bioseparation
• Fermentation
• +۵ مورد دیگر

Dr. Seung-gu Lee is a Principal Scientist and Director of the Synthetic Biology Institute at the Korea Research Institute of Bioscience and Biotechnology (KRIBB). He holds a Ph.D. in Biotechnology from KAIST and serves as the President of the Korean Society of Enzyme Engineering. His leadership extends to multiple national research initiatives focused on advancing synthetic biology infrastructure and applications. Dr. Lee is a leading expert in genetic circuits and enzyme engineering for synthetic biology. He pioneered the development of GESS (Genic Enzyme Screening System/Circuits) technology, which enables ultra-high-speed screening of trace enzyme activities at the single-cell level. His research focuses on applying intelligent genetic circuits to biosensors, metabolic control, and bioprocess development. He is actively integrating AI-based automated workflows with synthetic biology to revolutionize the speed and scale of biological research. His work spans multiple disciplines including enzyme engineering, genetic circuit design, metabolic engineering, and biofoundry development. Dr. Lee currently leads several major research initiatives including the Korea-North America Biofoundry Collaboration Global Joint Research Center, the development of core technologies for advanced synthetic biology, and the establishment of biofoundry infrastructure. His research team at KRIBB works at the intersection of synthetic biology, enzyme engineering, and AI-based automation to develop next-generation bio-manufacturing platforms. The lab has made significant contributions to genetic circuit design, biosensor development, and plastic biodegradation technologies.

• Synthetic Biology
• Enzyme Engineering
• Genetic Circuits
• +۳ مورد دیگر

Dr. Liang Yu is an Adjunct Professor at Washington State University (WSU) within the College of Agricultural, Human, and Natural Resource Sciences (CAHNRS), Department of Biological Systems Engineering. He holds roles as a Guest Editor for the Journal of Fermentation (Energy Converter-Anaerobic Digestion), Faculty Senator for Non-Tenure Track Faculty, Anti-Hazing Advisory Committee member, and Review Committee member for undergraduate research scholarships at WSU. His research focuses on biorefinery-based industrial symbiosis and the circular economy, employing multi-scale mathematical modeling (molecular simulation, CFD, bioprocess control, machine learning) to optimize anaerobic digestion systems. His work aims to convert organic waste (animal manure, food waste) into renewable natural gas, fertilizers, and bioproducts. He has secured funding from the DOE and USDA, with over 60 peer-reviewed publications and five patents. Key research themes include hydrothermal pretreatment, ammonia recovery, microbial community dynamics, and techno-economic analysis. Recent articles emphasize anaerobic digestion innovation, biodesulfurization, and biohydrogen production. His contributions bridge environmental engineering, biotechnology, and sustainable systems design. Dr. Yu’s grants and patents reflect a commitment to applied sustainability solutions, with projects addressing agricultural waste valorization and energy recovery. Collaborative efforts drive his work, integrating computational modeling with experimental validation for scalable bioenergy systems.

• Biorefinery
• Circular Economy
• Environmental Engineering
• +۷ مورد دیگر

Prof. Dr. Sven Panke is a Full Professor and Head of the Department of Biosystems Science and Engineering at ETH Zürich. His research focuses on bioprocess engineering, synthetic biology, and enzymatic process development. Key areas include miniaturized bioreactor systems, microbial engineering for novel metabolite production, and high-throughput screening methodologies. Education: Studied Biotechnology at TU Braunschweig, with postgraduate research at the German National Research Center for Biotechnology and ETH Zurich. Transitioned from industry (DSM) to academia in 2001 as an Assistant Professor, progressing to Associate Professor (2007-2009) before leading the BSS department. Research interests emphasize directed evolution of enzymes, metabolic pathway engineering, and systems biology approaches to optimize microbial production systems. Current projects include bio-indigo synthesis, antimicrobial peptide discovery, and synthetic biology tools for cellular engineering. Labs/Teams: Leads the Bioprocess Engineering Lab at ETH Zurich, collaborating on projects like the E. coli import system design and γ-glutamyltransferase engineering. Active in developing microfluidics platforms for parallel reaction analysis. Grants/Advising: Funded by initiatives in sustainable biomanufacturing and synthetic biology. Supervises graduate students in bioprocess design and microbial systems engineering.

• Bioprocess Engineering
• Synthetic Biology
• Fermentation Technology
• +۳ مورد دیگر

Adjunct Professor Robert Speight holds a position at Queensland University of Technology (QUT) within the Faculty of Science, School of Biology & Environmental Science. His primary role is Director of CSIRO's Advanced Engineering Biology Future Science Platform. He focuses on microbial biotechnology, enzyme engineering, and industrial biotechnology applications. His research spans protein engineering, microbial production systems, and biocatalyst development for industrial processes. Education: BSc (Chemistry) from Imperial College London (1996) PhD in Biochemistry from the University of Cambridge (2000) Research Interests: Enzyme optimization for industrial applications Microbial protein production systems Biocatalytic processes for chemical manufacturing Biorefinery development and techno-economic assessments Synthetic biology for future foods and sustainable bioproduction Grants & Projects: Lead investigator for the $6.5M Queensland Sustainable Aviation Fuel Initiative ARC Centre of Excellence in Synthetic Biology (2020–present) Biorefineries for Profit Phase 2 (RnD4Profit 2019) Collaborations: Works with industry partners and academic groups, including the ARC Centre of Excellence in Synthetic Biology and the Centre for Agriculture and Bioeconomy at QUT. Affiliations: President of Synthetic Biology Australasia CSIRO Director of Advanced Engineering Biology Future Science Platform Labs/Teams: Maintains collaborations in enzyme engineering and microbial systems through QUT’s adjunct role and CSIRO leadership.

• Industrial Biotechnology
• Synthetic Biology
• Enzyme Engineering
• +۴ مورد دیگر