جست‌وجوی استاد و پژوهشگر

• Machine Learning
• Explainable AI
• Neural Networks
• +۳ مورد دیگر

Jonas Fischer is the head of the Explainable Machine Learning group at the Max Planck Institute for Informatics, Department of Computer Vision and Machine Learning. His research focuses on interpreting complex machine learning models, particularly in genomics and healthcare, aiming to enhance robustness and alignment with human decision-making. Prior to his role at MPI, he was a postdoctoral fellow at Harvard University's Department of Biostatistics, where he worked on interpretable models for gene regulatory systems in cancer. Education: PhD in Computer Science from Saarland University (2022), with a thesis titled More than the sum of its parts , exploring the intersection of pattern mining and deep learning. He has contributed to advancing methods in neural network pruning, federated learning, and low-dimensional embeddings (e.g., dtSNE, Mercat). His work bridges computational biology, data mining, and machine learning, with applications in DNA methylation analysis, graph-based differential networks, and biomedical informatics. Key research areas include: (1) Explainable AI and neural network interpretability, (2) Biomedical applications of machine learning (e.g., gene regulatory networks, cancer genomics), (3) Low-dimensional embeddings and visualization techniques, (4) Federated learning for privacy-preserving collaborative models, and (5) Pattern mining for error analysis in NLP and classification tasks. Publications span top venues like NeurIPS, ICLR, Bioinformatics, and Genome Biology. His group develops tools such as BONOBO for omics data integration and node2vec2rank for scalable graph analysis. He actively collaborates with biomedical researchers to address challenges in data-driven healthcare and precision medicine.

Knut Reinertمشاهده پروفایل

استاد

• Algorithmic Bioinformatics
• Genomic Sequence Analysis
• Proteomics
• +۷ مورد دیگر

Professor Knut Reinert is a leading figure in algorithmic bioinformatics at the Free University of Berlin, where he holds a professorship in the Department of Mathematics and Computer Science. He also maintains a significant affiliation with the Max Planck Institute for Molecular Genetics in Berlin, where he leads the Efficient Algorithms for Omics Data group. His research spans both institutions through the Reinert Lab, which focuses on developing novel computational approaches for biological data analysis. Reinert's educational background includes a Diploma in Computer Science (1994) and a Doctorate (Dr. Ing./Ph.D., 1999, with honors) from the Max-Planck-Institut for Computer Science and Universität des Saarlandes in Saarbrücken. Prior to his professorship, he worked as a computer scientist under Prof. Gene Myers at Celera Genomics in Rockville, USA (1999-2002). His primary research interests center on algorithmic bioinformatics with specific focus on developing novel algorithms and data structures for biomedical mass data analysis. This includes creating mathematical models for genomic sequence analysis and algorithms for mass spectrometry data to detect differential protein expression between normal and diseased samples. His work bridges the gap between computational tool development and practical biological applications, with particular emphasis on NGS and proteomics data. The publications and projects led by Prof. Reinert demonstrate a consistent focus on advancing computational methods in bioinformatics. His research spans genomic sequence analysis, RNA research (particularly long non-coding RNAs), parallel computing applications, and GPU acceleration for biological data processing. The work shows increasing sophistication in handling large-scale biological datasets through innovative algorithmic approaches. Intel® Parallel Computing Center designation for his lab CUDA Research Center status DFG funding of 530 thousand Euros for RNA research de.NBI funding of 2 million Euros BMBF funded projects 'LIVE-DREAM' and 'EssBar' Prof. Reinert leads multiple significant research projects and has established strong collaborations with international partners including Texas A&M, Kings College London, Eberhardt-Karls Universität Tübingen, Robert-Koch-Institute, and various Turkish institutions. His lab receives funding from major organizations including DFG, BMBF, and Intel. The Reinert Lab maintains active teaching responsibilities at FU Berlin, offering courses at BSc, MSc, and PhD levels using both traditional and innovative learning concepts like e-learning and inverted classrooms. The Reinert Lab consists of two interconnected research groups that work closely with experimental biologists and medical researchers to develop practical computational solutions for real-world biological problems. The lab has established itself as a key player in the German and international bioinformatics community through its development of the widely-used SeqAn library and participation in national infrastructure initiatives.

Vincent Fortuinمشاهده پروفایل

استادیار

• Bayesian Deep Learning
• Uncertainty Quantification
• Probabilistic Inference
• +۵ مورد دیگر

Dr. Vincent Fortuin is a tenure-track Assistant Professor at the Technical University of Munich (TUM) and a research group leader at Helmholtz AI in Munich. He leads the Efficient Learning and Probabilistic Inference for Science (ELPIS) group and holds multiple prestigious fellowships including the Branco Weiss Fellowship. His academic affiliations include the TUM School of Computation, Information and Technology, the Konrad Zuse School of Excellence in Reliable AI, and the Munich Center for Machine Learning. Dr. Fortuin earned his BSc in Molecular Life Sciences from the University of Hamburg (2012-2015), followed by an MSc in Computational Biology and Bioinformatics from ETH Zürich (2015-2017), where he received the ETH Excellence Scholarship and the Willi Studer Prize. He completed his PhD in Machine Learning at ETH Zürich (2017-2021) under the supervision of Gunnar Rätsch and Andreas Krause, supported by a Swiss Data Science Center PhD Fellowship. Prior to joining TUM, he was a Research Fellow at St. John's College, University of Cambridge (2022-2023). His research focuses on the intersection of Bayesian statistics and deep learning, specifically developing methods for more robust, data-efficient AI systems with reliable uncertainty estimates. His work addresses critical limitations in standard deep learning approaches, particularly their tendency to be overconfident in predictions and require large datasets for training. He investigates better priors and more efficient inference techniques for Bayesian deep learning, deep generative modeling, meta-learning, and PAC-Bayesian theory, with applications in scientific and biomedical domains. Dr. Fortuin's recent publications demonstrate a consistent focus on improving uncertainty quantification in deep learning systems, with increasing emphasis on practical applications in scientific contexts. His work spans from theoretical foundations of Bayesian deep learning to practical implementations in protein design, materials science, and medical applications. A notable trend is his exploration of how to make Bayesian methods more scalable and applicable to modern large-scale AI systems while maintaining theoretical guarantees. Branco Weiss Fellowship (2023) St John's College Research Fellowship (2022) Swiss National Science Foundation Postdoc.Mobility Fellowship (2022) Swiss Data Science Center PhD Fellowship (2018) ETH Excellence Scholarship (2015) Willi Studer Award (2018) Dr. Fortuin actively supervises PhD and Master's students through his ELPIS research group at Helmholtz AI. He serves as a regular reviewer and area chair for major machine learning conferences and is an action editor for TMLR. He co-organizes the Symposium on Advances in Approximate Bayesian Inference (AABI) and the ICBINB initiative, demonstrating his commitment to advancing the field through community building. His research group receives funding from multiple sources including Helmholtz AI, the Branco Weiss Fellowship, and collaborations with international institutions. Dr. Fortuin leads the Efficient Learning and Probabilistic Inference for Science (ELPIS) group at Helmholtz AI, which focuses on fundamental machine learning research motivated by real-world scientific problems. The group collaborates extensively with researchers across Helmholtz centers and international institutions, particularly in biomedical applications where reliable uncertainty estimates are crucial.

Lars Linsenمشاهده پروفایل

استاد

• Interactive Visual Analysis
• Medical Visualization
• Scientific Visualization
• +۴ مورد دیگر

Prof. Dr.-Ing. Lars Linsen is a full Professor of Computer Science at the Westfälische Wilhelms-Universität (WWU) Münster, leading the VISualization & graphIX (VISIX) group. His primary affiliation is the Institute of Computer Science within the Faculty of Mathematics and Computer Science. He holds adjunct professorships at Jacobs University, Bremen, and has held previous academic roles including Full Professor at Jacobs University (2012–2017) and Associate/Assistant Professor roles in Germany and the U.S. His research focuses on interactive visual analysis, medical visualization, and scientific visualization, with applications in life sciences and engineering. Education: PhD (Dr.-Ing.) in Computer Science from Universität Karlsruhe (2001), M.Sc. (Diplom) in Computer Science (1997), B.Sc. (Vordiplom) in Computer Science (1994). Awards: IEEE Visualization Design Contest Winner (2008, 2022, 2018), Preis des Fördervereins des Forschungszentrum Informatik (2002). Research Highlights: Develops visualization tools for medical imaging (e.g., mass spectrometry imaging, MRI data analysis) and physical simulations (e.g., wildfire spread analysis, asteroid impact modeling). Active in EU-funded projects like Pig-Pro-QuO (surface coatings) and cells-in-motion initiatives. Supervised over 20 PhD/MS advisees, including notable graduates in medical visualization and simulation ensemble analysis. Publications: Over 100 peer-reviewed articles in top venues like IEEE Transactions on Visualization and Computer Graphics, Computers & Graphics, and EuroVis. Key works include SciVis contest-winning wildfire analysis frameworks and medical visualization tools for stenosis detection. Teaching: Offers courses on visualization, computer graphics, and computational science. Actively involved in thesis supervision and curriculum development at both WWU Münster and Jacobs University. Grants & Collaborations: Principal investigator on DFG-funded projects (e.g., hemodynamics simulations, ensemble visualization) and industry collaborations (e.g., Tascon GmbH for coating quality analysis). Member of the Cells-in-Motion Interfaculty Centre and CDH board at WWU.

Martin Burgerمشاهده پروفایل

استاد

• Inverse Problems
• Applied Mathematics
• Mathematical Modelling
• +۱۵ مورد دیگر

Prof. Dr. Martin Burger is a leading scientist at DESY and a Full Professor in the Department of Mathematics at Universität Hamburg, where he leads the Computational Imaging Group. His research bridges applied mathematics, imaging sciences, and machine learning, with a focus on inverse problems, mathematical modeling, and partial differential equations. He has held professorial positions at Universität Münster and FAU Erlangen-Nürnberg prior to his current dual appointment. Full Professor, Universität Hamburg (2023–present) Leading Scientist, DESY, Hamburg (2023–present) Full Professor, FAU Erlangen-Nürnberg (2018–2023) Full Professor, Universität Münster (2006–2018) His research interests include inverse problems, variational regularization, optimal transport, kinetic models, and mathematical modeling in biology and social sciences. He has made significant contributions to imaging reconstruction, sparse neural networks, and the analysis of transformer architectures. His work often integrates theoretical analysis with computational methods, influencing both pure and applied mathematics. The most recent articles reflect a strong trend toward interdisciplinary applications, combining deep learning with PDE-based modeling, analyzing social and biological systems via kinetic and mean-field models, and advancing mathematical imaging through graph-based and optimal transport methods. His publications span high-impact venues in applied mathematics and computational science. Calderon Prize, Inverse Problems International Association (IPIA) ERC Consolidator Grant (2014) Invited speaker at ECM (2021), ICM (2022), and ICIAM (2023) Editor-in-Chief, European Journal of Applied Mathematics (since 2017) Prof. Burger has supervised numerous PhD students and postdoctoral researchers, many of whom appear as co-authors in his publications. His research is supported by major grants, including funding from the German Federal Ministry of Education and Research (BMBF). He is actively involved in collaborative projects across mathematics, physics, and engineering disciplines. He leads the Computational Imaging Group at DESY, fostering a collaborative environment for developing novel mathematical tools in imaging science. The group works on both theoretical foundations and practical implementations, contributing to advancements in tomography, machine learning, and data analysis.

Olaf Ronnebergerمشاهده پروفایل

دانشیار

• Deep Learning
• Computer Vision
• Biomedical Image Segmentation
• +۴ مورد دیگر

Olaf Ronneberger is an associate professor at the Albert-Ludwigs-Universität Freiburg and works at Google DeepMind . His research focuses on deep learning architectures , AI applications to scientific problems , and protein structure prediction . He leads seminars on deep learning and 3D image analysis, emphasizing vision-language integration and generative models. His publications include foundational work on U-Net architectures for biomedical image segmentation, AlphaFold 3 for biomolecular interaction prediction, and Gemini models for multimodal AI systems. Key subfields span medical imaging , protein folding , and vision-language models . Co-developer of U-Net , a widely used biomedical image segmentation framework. Contributor to AlphaFold 3 for structural biology. Research on Gemini 1.5/2.5 models for multimodal reasoning.

• Business Process Management
• Process Mining
• Complex Event Processing
• +۵ مورد دیگر

Prof. Dr. Matthias Weidlich is a faculty member at Humboldt University of Berlin within the Institute of Computer Science under the Faculty of Mathematics and Natural Sciences . His research focuses on Process Mining , Complex Event Processing , and Data Privacy with applications in Business Process Management and Scientific Workflows . Research Interests: Business Process Management and Process Mining Complex Event Processing and Stream Data Analysis Data Privacy and Security in Process Systems Scientific Workflow Systems and User Behavior Heterogeneous Network Embeddings Algorithm Design and Optimization Recent Publications (2023-2025) demonstrate expertise in: Efficient stream processing techniques Privacy-preserving process mining frameworks Scientific workflow analysis tools Graph neural network applications Multi-modal data integration Adaptive querying systems Contact: Office: Unter den Linden 6, 10099 Berlin Phone: 030 2093-41277 Email: matthias.weidlich@hu-berlin.de Web: hu.berlin/data

Ralf Zimmerمشاهده پروفایل

استاد

• Bioinformatics
• Systems Biology
• Machine Learning
• +۵ مورد دیگر

Ralf Zimmer is a Full Professor for Practical Informatics and Bioinformatics at Ludwig Maximilian University of Munich (LMU) since 2001, affiliated with the Department of Informatics in the Faculty of Mathematica, Informatics and Statistics. He concurrently serves as Head of Section III and Head of the Research Group Network Regulation and Modeling / Machine Learning at the Leibniz Institute for Food Systems Biology at TUM (Leibniz-LSB@TUM) in Freising, Germany. His academic foundation includes a Diploma with distinction in Computer Science, Applied Mathematics and Operations Research from the University of Bonn (1981-1986), followed by a summa cum laude Doctorate in Computer Science and Applied Mathematics from CAU Kiel in 1990, where he received dual honors: the CAU Dissertation Award and Best Dissertation Award. Zimmer's research pioneers the integration of bioinformatics, systems biology, and machine learning to decode molecular food-consumer interactions. His group develops causal system models for biological networks, validated through in silico simulations and multi-omics perturbation experiments (transcriptomics/proteomics). Core methodologies include network regulation modeling, algorithmic bioinformatics, and database construction linking food compounds to biochemical networks and cellular phenotypes, with translational goals for food and biotech innovation. His 14 most recent publications (2012-2024) reveal dominant trends in multi-omics immunology and cardiovascular research, featuring computational innovations for high-throughput data analysis. Key themes include host-pathogen dynamics (viral infections), inflammatory disease mechanisms (atherosclerosis), and methodological advances in proteomics/transcriptomics, consistently bridging fundamental bioinformatics with clinical applications. Major scientific recognitions include: CAU Dissertation Award and Best Dissertation Award (1990) Director of LMU's Informatics Department (2010-2012) DFG Review Board membership for biomedical foundations (2008-2016) Leadership of the DFG Bioinformatics Munich Center (2001-2008) Academic Senate election at LMU München (2011) Zimmer directs LMU/TUM's joint B.Sc./M.Sc. bioinformatics programs since 2001 as founding architect of the DFG-funded Bioinformatics Munich initiative. His educational leadership spans spokesperson roles for international training groups (IRTG RECESS), collaborative research centers (SFB1123 Atherosclerosis), and elite programs (Data Science, Munich Center for Machine Learning). Grant stewardship includes directing the DFG Bioinformatics Munich Center and shaping national funding policy via the DFG review board. At Leibniz-LSB@TUM, his research group pioneers databases connecting food compounds to cellular phenotypes through molecular networks, collaborating with Munich universities, clinics, and biotech partners to develop high-throughput sequencing/proteomics applications for future food and health innovations.

Sören Laueمشاهده پروفایل

استاد

• Machine Learning
• Optimization Algorithms
• GPU Computing
• +۳ مورد دیگر

Prof. Dr. Sören Laue is a Professor of Machine Learning at the University of Hamburg's Department of Informatics. His research focuses on optimization algorithms, machine learning frameworks, and high-performance computing. He leads the Machine Learning research group and developed the GENO optimization framework and the Matrix Calculus toolset. His work emphasizes GPU acceleration, tensor operations, and scalable solutions for classical machine learning problems. Projects: GENO solver (Python-based optimization), Matrix Calculus (derivative computation), and SQL-based tensor operations. Key Research Themes: Optimization frameworks, GPU computing, neural network scalability, and algorithm design. Selected recent publications highlight contributions to tensor calculus benchmarks, GPU-optimized machine learning pipelines, and novel optimization methods. His work bridges theoretical foundations and practical software tools for the machine learning community.

Marcell K. Petersمشاهده پروفایل

پژوهشگر

• Biodiversity
• Community Ecology
• Climate Change
• +۵ مورد دیگر

Dr. Marcell K. Peters is a Senior Academic Councillor at the Chair of Animal Ecology and Tropical Biology (Zoology III) at the University of Bremen. His research focuses on biodiversity patterns, ecosystem functioning, and climate-land use interactions in tropical and montane environments, with extensive fieldwork in East Africa and the Amazon. He leads projects under DFG and EU funding, including the UPSCALE initiative. Habilitation in Zoology (University of Würzburg, 2018) PhD in Biology (University of Bonn, 2008) Diploma in Biology (RWTH Aachen & University of Bonn, 2003) Research spans multi-taxa community ecology, army ants and ant-following birds, DNA barcoding applications, and climate change impacts on pollination networks. Google Scholar highlights recent work on climate-agriculture interactions in sub-Saharan Africa, trait-based community assembly, and network resilience in biodiversity hotspots. His publications emphasize elevational gradients, disturbance ecology, and functional diversity across Mount Kilimanjaro studies. Current affiliations include the DFG Research Unit Kilimanjaro and EU-funded UPSCALE project. He employs advanced methods like airborne LiDAR for biodiversity prediction and investigates nutrient use by ant communities across continents.

• Machine Learning
• Bioinformatics
• Medical Imaging
• +۵ مورد دیگر

Paul J. Kennedy is a Professor at the University of Technology Sydney's Centre for Artificial Intelligence. He holds a PhD from the same institution (1999). His research focuses on machine learning applications in healthcare, bioinformatics, medical imaging, and data mining. Key areas include developing algorithms for genomic data analysis, healthcare pathway modeling, and edge-cloud frameworks for omics data. Education: PhD in Artificial Intelligence (1999, UTS). Research interests span machine learning, health informatics, and data compression. Notable work includes studies on administrative health records, lung nodule detection, and virtual reality-based cancer cohort analysis. He has co-authored over 100 publications across journals like BMC Bioinformatics, IEEE Transactions, and Artificial Intelligence in Medicine. Advising: Collaborates extensively with students/researchers but no explicit student list provided. Grants and labs: Active in interdisciplinary projects involving medical and computational teams, though specific grants are not detailed here.

• Functional Data
• Time Series Data
• Spatial Statistics
• +۶ مورد دیگر

Pramita Bagchi is an Assistant Professor in the Department of Biostatistics & Bioinformatics at The George Washington University (GWU), affiliated with the Milken School of Public Health. She holds a Ph.D. in Statistics from the University of Michigan and completed a postdoctoral fellowship at Ruhr Universitat Bochum in Germany. Her research focuses on developing statistical methodologies for analyzing dependent data, particularly in high-dimensional and functional contexts such as time series, spatial data, and functional observations. Education: Ph.D. in Statistics, University of Michigan, Ann Arbor Postdoctoral Research, Department of Mathematics, Ruhr Universitat Bochum Research Interests: Functional Data Analysis Spatiotemporal Modeling High-Dimensional Data Non-Parametric Inference Healthcare Applications Methodological Development for Biomedical Data Publications span statistical theory (e.g., functional time series analysis) and applied health research (e.g., heart transplant biomarkers, acculturation effects in immigrant health). Recent work emphasizes methodological innovations for complex data structures, blending theoretical rigor with real-world applications in cardiology and epidemiology. Grants & Collaborations: NSF Grant: "Empirical Frequency Band Analysis for Functional Time Series" (2022–2025) INOVA Hospital Grant: "Clinical Data Analytics in Cardiac Transplantation" (2020–2023) Teaching includes advanced courses like Mathematical Statistics I (STAT 872), reflecting her expertise in statistical theory and methodology.

• Honeybee Genetics
• Animal Breeding
• Disease Resistance
• +۳ مورد دیگر

Prof. Dr. agr. Kaspar Bienefeld is an Honorary Professor at the Humboldt University of Berlin within the Albrecht Daniel Thaer-Institute of Agricultural and Horticultural Sciences. His research focuses on honeybee genetics, breeding optimization, and disease resistance mechanisms. Research Interests: Honeybee population genetics, Varroa mite resistance, genomic selection, and behavioral ethology. Key Contributions: Development of SNP assays for resistance traits, simulation studies for breeding schemes, and conservation strategies like Europe’s first honeybee gene bank. Publications: Over 40 peer-reviewed articles spanning honeybee breeding, genetic parameter estimation, and stress biomarker analysis.

• Computer Science
• Machine Learning
• Health Monitoring Systems
• +۷ مورد دیگر

Muhammad Waqas is a researcher affiliated with COMSATS University Islamabad , where he holds a position in the Department of Meteorology under the School of Applied Sciences and Humanities . His academic collaborations span institutions like Bahria University, National University of Technology, and University of Bahrain, indicating a multidisciplinary approach. Research interests include Mechanisms for integrating fuzzy logic and machine learning in health monitoring Application of deep learning to medical imaging and clinical diagnostics Development of smart sensors for wearable technology in biomechanics Analysis of social media data for public health surveillance and sentiment analysis Investigation of digital citizenship and ICT leadership in educational contexts Trends in his 15 most recent publications (2025-2024) reveal a focus on medical diagnostics (e.g., monkeypox, breast cancer), smart infrastructure (e.g., sensor placement, structural health monitoring), and social media analytics for health and behavioral insights. These works leverage machine learning , fuzzy systems , and multi-objective optimization .

Florian Buettnerمشاهده پروفایل

استاد

• Bioinformatics
• Machine Learning
• Multi-omics Data Integration
• +۲ مورد دیگر

Florian Buettner is Professor for Bioinformatics in Oncology at Goethe University Frankfurt, with affiliations at the German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ). His research integrates multi-omics data with machine learning for cancer research. Research focuses on: Multi-omics bioinformatics AI for precision oncology Probabilistic modeling Single-cell analysis Uncertainty quantification Buettner received an ERC Consolidator Grant to develop trustworthy AI models for cancer diagnosis. His methodological innovations include techniques for single-cell RNA sequencing analysis and model calibration.