جست‌وجوی استاد و پژوهشگر

Karoline Faustمشاهده پروفایل

دانشیار

• Microbial community dynamics
• Microbial systems biology
• Bioinformatics
• +۶ مورد دیگر

Karoline Faust is an Associate Professor at KU Leuven, affiliated with the Laboratory of Molecular Bacteriology (Rega Institute) and the Faculty of Medicine . She contributes to the iSi Health and Leuven One Health institutes, and serves on senior academic councils. Her research spans microbial systems biology, focusing on community dynamics and network analysis. Education: PhD in bioinformatics (2010, KU Leuven) Affiliations: KU Leuven, ISME Journal editorial board, Belgian Society for Microbiology Her research investigates microbial community dynamics , systems biology approaches to microbiomes, and bioinformatics tool development . She specializes in modeling human gut microbiota , synthetic microbial communities , and environmental microbiomes (e.g., microplastic impacts on Daphnia microbiomes). Her work integrates metabolic modeling , network analysis , and experimental systems to understand microbial interactions. Recent publications highlight her contributions to microbial network inference , 16S rRNA sequencing protocols , microfluidics , and ecological modeling of microbiomes. She develops tools like manta , miaSim , and CoNet to analyze community structures. Teaching: Karoline co-teaches courses in microbiology, bioinformatics, and network analysis at KU Leuven, and has contributed to international workshops on microbial network inference. Scientific Engagement: She serves as Senior Editor at ISME Journal and Secretary of the Belgian Society for Microbiology .

Jeremy Wangمشاهده پروفایل

استادیار

• Computational Biology
• Genomics
• Microbiome Research
• +۷ مورد دیگر

Jeremy Wang, PhD is an Assistant Professor in the Department of Genetics at the UNC School of Medicine . His research focuses on applying high-performance computational methods and machine learning to analyze high-throughput sequence data using long-read technologies (e.g., Oxford Nanopore) to advance precision personalized medicine . Key disease areas include Inflammatory Bowel Diseases (IBD) Respiratory Infectious Diseases His lab specializes in microbiome analysis , host-pathogen interactions , and computational genomics , working with collaborators in clinical, translational, and computational domains. His publications demonstrate expertise in long-read sequencing applications for Pediatric cancer classification SARS-CoV-2 genomic epidemiology Microbiome spatiotemporal dynamics Murine disease models Drosophilid genome assemblies Metagenomic bias analysis Collaborations span UNC and global institutions, with current work extending to clinical laboratory partnerships for pathogen sequencing and oral microbiome sampling methodology.

Zackary Johnsonمشاهده پروفایل

دانشیار

• Marine Microbial Ecology
• Biological Oceanography
• Algal Biotechnology
• +۴ مورد دیگر

Zackary Johnson , the Juli Plant Grainger Associate Professor of Biological Oceanography and Marine Biotechnology at Duke University, leads interdisciplinary research at the intersection of marine microbiology and biogeochemical innovation. Affiliated with the Nicholas School of the Environment and based at the Duke Marine Laboratory , his work spans microbial ecology, algal biotechnology, and climate mitigation strategies. Education: Ph.D. in Marine Science (Duke University, 2004), B.S. in Biology (MIT, 1994) Research Interests focus on marine microbial communities, particularly the model phytoplankton Prochlorococcus , algal cultivation for sustainable bioproducts, and the ecological impacts of ocean acidification. His lab investigates microbial interactions across diverse environments—from coastal estuaries to open-ocean gyres—and develops technologies for carbon-negative aquaculture systems. Publications highlight expertise in microbial biogeography, algal biofuels, and climate-resilient marine food webs. Recent work explores drone-based ocean color sensing, Gulf Stream eddy microbiomes, and the role of Labyrinthulomycetes protists in carbon export. Scientific Awards: Juli Plant Grainger Associate Professorship DOE and NSF-funded projects Grants include high-profile initiatives like the Marine Algae Industrialization Consortium (MAGIC) and REU Site program for coastal research training. His lab maintains a dedicated research site for studying microbial dynamics and sustainable algal cultivation.

Mikhail Gelfandمشاهده پروفایل

استاد

• molecular evolution
• comparative genomics
• systems biology
• +۷ مورد دیگر

Mikhail Gelfand is a Full Professor and Director of the Center for Molecular and Cellular Biology at Skolkovo Institute of Science and Technology (Skoltech), where he also serves as Vice President for Biomedical Research. His distinguished career spans multiple prestigious institutions including Lomonosov Moscow State University and the Higher School of Economics. His educational background includes: 1985: MSc in mathematics (functional analysis) 1993: PhD in physics-mathematics (biophysics) 1998: DSc in biology (molecular biology) 2007: full professor (bioinformatics) Professor Gelfand's research focuses on molecular evolution, comparative genomics, systems biology, and metagenomics. His work examines eukaryotic processes including alternative splicing, mRNA editing, and chromatin structure, as well as bacterial genome evolution and transcription regulation. His lab combines data on three-dimensional chromatin structure, epigenetic states, and gene expression to obtain an integrated view of genome functioning across diverse organisms from humans to amoebae. One major research direction focuses on the evolution of transcript splicing and editing, while comparative analysis of bacterial genomes yields functional annotations of novel enzymes, transporters, and transcription factors. His recent publications demonstrate a strong focus on RNA editing in cephalopods, bacterial genome analysis, and computational approaches to understanding chromatin structure. The work spans molecular biology, evolutionary biology, and bioinformatics, with particular emphasis on how RNA editing contributes to adaptation and molecular evolution across metazoans. His research shows how edited adenines are more frequently substituted with guanine in evolution than their unedited counterparts, suggesting RNA editing may enhance adaptation. His notable awards include: The President of Russian Federation's Award for Young Doctors of Science (2000) The "Best Scientist of the Russian Academy of Sciences" award (2004) A. A. Baev Prize in Genomics and Genoinformatics (2007) Member of Academia Europaea (2010) As Director of the Center for Molecular and Cellular Biology, Professor Gelfand leads a research group that combines computational and experimental approaches to study genome function and evolution. His lab's work has significant implications for understanding molecular mechanisms of evolution and adaptation across diverse biological systems, from bacteria to complex eukaryotes. His research on metagenomics extends to practical applications in areas including coral disease, aphids, and oil wells.

Ben Larsonمشاهده پروفایل

استادیار

• Biological Physics
• Cell Biology
• Evolution
• +۵ مورد دیگر

Ben Larson is an Assistant Professor in the Department of Biological Sciences at Rensselaer Polytechnic Institute (RPI), affiliated with the Center for Biotechnology and Interdisciplinary Studies (CBIS). His research bridges biological physics, cell biology, and evolutionary principles to study complex cellular behaviors without nervous systems. BA in Physics, Reed College (2012) Postbaccalaureate Research Fellow, NIH NHLBI (2012-2014) PhD in Biophysics, UC Berkeley (2019) Postdoctoral Scholar, UCSF (2019-2024) Research Focus: The Larson Lab applies interdisciplinary tools from physics and computation to investigate sensorimotor activity in unicellular organisms like Euplotes , exploring how cells achieve sophisticated behaviors through cytoskeletal dynamics and finite-state mechanisms. Key themes include cellular decision-making, evolutionary biophysics, and multicellular morphogenesis. Scientific Awards: 2013 Orloff Science Award 2016-2019 NSF Graduate Research Fellowship 2016 Society of General Physiology Scholar 2020-2023 Merck Postdoctoral Fellowship 2022 Porter Prize for Research Excellence (ASCB)

Patrick Keelingمشاهده پروفایل

استاد

• Molecular Evolution
• Protistology
• Microbial Diversity
• +۴ مورد دیگر

Dr. Patrick Keeling is a Professor in the Department of Botany at the University of British Columbia (UBC), affiliated with the Biodiversity Research Centre and the Faculty of Science. He holds a Canada Research Chair Tier 1 in Microbial Diversity and Evolution. His research focuses on the molecular evolution and cell biology of eukaryotes, particularly protists, emphasizing their diversity, genomic adaptations, and roles in ecosystems. Key projects include studying endosymbiotic events, apicomplexan parasites, and the genomic evolution of microbial eukaryotes. Affiliations: Department of Botany, Biodiversity Research Centre, Faculty of Science (UBC) Research Interests: Protistology, microbial diversity, endosymbiosis, genome evolution, phylogenetics, and comparative genomics Dr. Keeling’s lab investigates protist taxa such as apicomplexans, dinoflagellates, and chlorarachniophytes, with a focus on their metabolic pathways, organelle evolution, and ecological roles. Recent work includes uncovering coral-infecting parasites, analyzing microbial symbioses, and exploring the origins of multicellularity. His team employs genomic, transcriptomic, and microscopy-based approaches to address evolutionary questions. Awards: Canada Research Chair Tier 1 (2021–present). Scientific contributions span over 200 publications, emphasizing protist diversity, parasite evolution, and endosymbiotic mechanisms. His lab hosts students and collaborates globally on marine and microbial research projects. Labs/Teams: The Keeling Lab at UBC, part of the Biodiversity Research Centre, integrates molecular, genomic, and ecological methods to study microbial eukaryotes. Collaborations include studies on coral symbionts, dinoflagellate evolution, and protistan microbiomes.

• Genome Evolution
• Gene Transfer
• Endosymbiosis
• +۵ مورد دیگر

John M. Archibald is a Professor in the Department of Biochemistry and Molecular Biology and the Department of Microbiology & Immunology at Dalhousie University's Faculty of Medicine in Halifax, Nova Scotia, Canada. He serves as Director of the Institute for Comparative Genomics (ICG) and holds the Arthur B. McDonald Research Chair of Excellence. Dr. Archibald has been a department member since 2003 and was University Research Professor from July 2016 to June 2021. Dr. Archibald earned his PhD from Dalhousie University. Following postdoctoral research at the University of British Columbia with Patrick Keeling, he returned to Dalhousie as a faculty member in 2003. Dr. Archibald's research focuses on the genes and genomes of microorganisms, particularly examining how genes are transferred between eukaryotes, prokaryotes and viruses, and how endosymbionts become organelles. His laboratory uses molecular biological and computational methods to study the genes and genomes of prokaryotic and eukaryotic microorganisms. Key research areas include the pivotal molecular and biochemical events that have shaped eukaryotic evolution, understanding evolutionary relationships among eukaryotic microbes, how endosymbionts become organelles, and how eukaryotic genes, genomes and proteins change over time. Current work examines the spread of photosynthetic organelles (chloroplasts) in eukaryotes and the extent of lateral (horizontal) gene transfer in nuclear genomes. His recent publications demonstrate a strong focus on protist genomics, endosymbiosis, and the evolution of eukaryotic cells. The research spans multiple disciplines including genomics, evolutionary biology, microbiology, and bioinformatics, with particular emphasis on understanding the complex evolutionary history of eukaryotes through comparative genomic approaches. His work often involves international collaborations and large-scale genomic projects. Dr. Archibald has received numerous scientific honors including: Election as Fellow of the Royal Society of Canada Election as Fellow of the American Academy of Microbiology (2015) Arthur B. McDonald Research Chair of Excellence University Research Professor (July 2016-June 2021) Membership in the Canadian Institute for Advanced Research (2003-2017) Visiting By-Fellow at Churchill College, University of Cambridge (2012) Appointment to the Royal Society of Canada's College of New Scholars, Artists and Scientists (2017) Dr. Archibald actively mentors graduate students and postdoctoral fellows, with current advisees including PhD students Cedric Blais, Dmytro Tymoshenko, and Jessica Latimer, and MSc student Charlotte Maclean. His lab has received substantial research funding that supports these trainees and enables cutting-edge genomic research. He has served in editorial roles for prestigious journals including Current Biology, Environmental Microbiology and BMC Biology, and was Treasurer of the International Society for Molecular Biology & Evolution (2009-2011). The Archibald Lab operates within the Institute for Comparative Genomics at Dalhousie University, which was officially launched in September 2021 with Dr. Archibald as Director. The lab maintains active collaborations with researchers worldwide and contributes to major international genomic initiatives including the Aquatic Symbiosis Genomics Project.

Katherine McMahonمشاهده پروفایل

استاد

• Microbial Ecology
• Environmental Microbiology
• Biogeochemistry
• +۳ مورد دیگر

Katherine McMahon is a Vilas Distinguished Achievement Professor in the College of Engineering at the University of Wisconsin–Madison. Her work focuses on microbial ecology, environmental microbiology, and biogeochemistry, particularly in freshwater systems like Lake Mendota. She leads long-term ecological studies integrating metagenomics and microbial population dynamics to understand ecosystem processes. Her research investigates the interplay between microbial communities, environmental drivers, and biogeochemical cycles. Notable projects include 20-year time-series studies of bacterial and viral ecology, mercury methylation in lakes, and the impact of climate change on microbial-driven ecosystem functions. She also explores engineered microbiomes for wastewater treatment. Recent work highlights viral dynamics, nitrogen fixation constraints, and microbial responses to environmental stressors. Articles emphasize freshwater lake microbiology, including protistan ecology and the role of electroactive bacteria. Her team’s contributions include refining the genus ‘Candidatus Accumulibacter’ and analyzing viral-host interactions in natural and engineered systems. Scientific recognition includes the Vilas Distinguished Achievement Professorship. Research is supported by grants addressing microbial community resilience, One Health, and climate-microbe-human interactions. Labs and projects include the Lake Mendota Microbial Observatory, generating extensive datasets on limnology, microbial traits, and environmental parameters. Collaborations bridge environmental engineering, public health, and evolutionary biology to address global challenges in water quality and microbial ecology.

Connie Lovejoyمشاهده پروفایل

استاد

• Microbial biodiversity
• Arctic marine microbes
• Phytoplankton
• +۷ مورد دیگر

Connie Lovejoy is a Professor in the Department of Biology at Université Laval, Quebec, Canada, specializing in Arctic marine microbial ecology. Her research focuses on microbial biodiversity in polar environments, particularly planktonic microorganisms including phytoplankton, protists, archaea, and bacteria that drive global carbon and mineral cycling. She leads multiple research projects examining Arctic microbial communities and their responses to climate change. Dr. Lovejoy received her B.Sc. from the University of California Davis (1973-1976), followed by a Ph.D. in Oceanography from Université Laval (1998-2002), and completed a postdoctoral fellowship at Institut Ciènces del Mar, CSIC' CMIMA in Spain (2002-2004). Her research interests center on Arctic marine microbes and their ecological roles. She investigates questions regarding microbial abundance, genetic and metabolic diversity, and the factors determining growth and mortality in these organisms. Her work examines how these microorganisms function within changing Arctic ecosystems, particularly in relation to climate change impacts on microbial food webs and biogeochemical cycles. She has pioneered research on microbial communities in permafrost lakes, river-to-sea continua, and under-ice environments. Analysis of her recent publications (2022-2024) reveals consistent focus on Arctic microbial ecology across multiple dimensions: microbial community structure across environmental gradients, biogeochemical cycling in changing environments, evolutionary adaptations of polar microorganisms, and the use of molecular techniques to understand microbial diversity. Her work spans freshwater, brackish, and marine systems, with particular attention to the impacts of climate change on microbial communities and their ecosystem functions. Dr. Lovejoy has secured significant research funding through NSERC and ArcticNet grants, leading projects on Arctic microbial biodiversity, biogeography, and environmental selection. She has been instrumental in major research initiatives including the Canada First Research Excellence Fund Sentinel North project focusing on sentinel microbiomes for Arctic ecosystem health. Her laboratory at Université Laval collaborates extensively with international research teams across Canada, the United States, Europe, and participates in major Arctic research networks. She works closely with the Takuvik research unit, a joint Canada-France research laboratory focusing on Arctic studies.

Christopher Howeمشاهده پروفایل

استاد

• Photosynthesis
• Evolution of Photosynthetic Systems
• Biotechnology
• +۶ مورد دیگر

Professor Christopher Howe is a Professor of Plant and Microbial Biochemistry at the Department of Biochemistry, University of Cambridge . He has been a Fellow of the College since 1983 and currently serves as its President . He directs studies in Preclinical Medicine , teaching Biochemistry to first-year medical students. Research Interests : Photosynthesis biochemistry and evolution Biotechnological applications of photosynthetic organisms (e.g., algae for electricity production) Plasmodium's photosynthetic ancestry and remnant chloroplast Evolutionary analysis of non-biological systems like manuscripts Coral bleaching and dinoflagellate-coral symbiosis Article Trends : Focus on cyanobacteria, dinoflagellates, and Plasmodium Biophotovoltaic systems and sustainable energy Phylogenetic methods in biological and cultural evolution Scientific Awards : Fellow of the American Academy of Microbiology (2017) Advising and Collaborations : Supervises graduate students in the Howe Group Collaborates with academic and commercial partners (Anaero Technology, LEITAT, Spireat) Labs & Teams : Leads the Howe Group at the Department of Biochemistry Co-leads the BEST Project for biophotovoltaic systems Works with 3D organotypic cultures and biophotoelectrochemistry

• Genome Evolution
• Comparative Genomics
• Organelle Evolution
• +۳ مورد دیگر

Andrew J. Roger is a Professor in the Department of Biochemistry and Molecular Biology at Dalhousie University, Faculty of Medicine. His primary roles include academic research and leadership as the Founding Director of the Institute for Comparative Genomics (ICG) and Canada Research Chair in Comparative Genomics. He has been a department member since 2001. Education: PhD in Biochemistry from Dalhousie University Affiliations: Dalhousie University, Department of Biochemistry and Molecular Biology; Institute for Comparative Genomics (ICG) His research focuses on genome evolution, particularly in eukaryotic protists. Key interests include: Phylogenomics of eukaryotic super-kingdoms like Excavata Comparative genomics of anaerobic protists and lateral gene transfer (LGT) Evolution of mitochondria, hydrogenosomes, and mitosomes Modeling molecular evolution with computational tools Recent publications (2021–2023) highlight studies on protist organelle evolution, genomic adaptation mechanisms, and novel phylogenetic methods. His lab includes graduate students and postdocs actively researching these areas. He collaborates extensively with statisticians and computational biologists. Lab Members: Tugba Nur Atalay, Min Cho, Marlena Dlutek, Katherine Dunn, Ryo Harada, Joran Martijn, Charley McCarthy, Greg Seaton, Jason Shao, Kelsey Williamson, and others.

Karla Heidelbergمشاهده پروفایل

استاد

• Marine Microbial Ecology
• Zooplankton Ecology
• Mixotrophy in Protists
• +۳ مورد دیگر

Karla Heidelberg is a Professor of Biological Sciences and Environmental Studies at the University of Southern California (USC), affiliated with the USC Dornsife College of Letters, Arts and Sciences. She serves as Director of USC Sea Grant Program and RTPC Faculty in the Natural and Social Sciences Divisions. Her research focuses on marine microbial ecology, mixotrophy in protists, and coastal ecosystem dynamics. She holds appointments at the Wrigley Institute for Environmental Studies and collaborates with institutions like the J. Craig Venter Institute. Education: Ph.D. in Marine-Estuarine Environmental Science (1999, University of Maryland), B.A. in Individualized Major (1988, Maryville College). Postdoctoral training at University of Maryland (1999–2001). Research Interests: Investigates microbial eukaryotes, zooplankton ecology, and environmental impacts on marine systems. Current projects include mixotrophic protist behavior, microbial diversity in hydrothermal vents, and coastal sediment nitrogen cycling. Past projects include studies on Lake Tyrrell hypersaline ecosystems and Antarctic microbial adaptations. Awards: Includes NSF Director’s Award (2022), multiple USC teaching awards (2017–2013), and U.S. Department of State honors (2004–2003). Recognized for contributions to microbial ecology education and outreach. Advising & Grants: Mentored over 10 graduate researchers. Active in educational outreach through USC Wrigley Institute programs, including REU sites for coastal sustainability and K-12 STEM engagement. Collaborates on NSF-funded initiatives to broaden geosciences diversity. Labs & Affiliations: Leads research at USC Wrigley Marine Science Center on Catalina Island. Affiliated with Microbiome editorial board and Frontiers in Aquatic Microbiology (2010–2019). Co-leads projects on microbial metagenomics and ocean time-series analysis.

• Mycovirology
• Plant Pathology
• Fungal Virology
• +۴ مورد دیگر

Maria Angeles Ayllón is an Associate Professor at the Technical University of Madrid (UPM) and leads the Virus-Fungus-Plant Interaction research group at the Center for Plant Biotechnology and Genomics (CBGP-UPM/INIA/CSIC) . Her research focuses on understanding the molecular mechanisms of mycovirus interactions with plant pathogenic fungi, particularly Botrytis cinerea , to develop sustainable biocontrol strategies for plant diseases. Research Focus: Mycovirus diversity and evolution in fungal pathogens Molecular mechanisms of fungal responses to viral infections Development of mycovirus-based biocontrol agents RNA silencing in fungi as antiviral defense Synthetic mycovirus construction for functional studies Her group has made significant contributions to mycovirus discovery, including novel Botrytis cinerea viruses, and has developed infectious clones for reverse genetics studies. The research has direct applications in sustainable agriculture, particularly in reducing chemical fungicide use as mandated by the EU Green Deal. Current Research Projects: PID2020-120106RB-I00 (2021-2024): "Molecular mechanism involved in the interaction of Botrytis cinerea-host plant mediated by a mycoviral infection" - Co-PI with Julio L. Rodríguez-Romero VIROPLANT H2020-SFS-17 (2018-2021): "Virome NGS analysis of pests and pathogens for plant protection" - PI Research Team: The group currently includes 3 PhD students (Cecilia Martín Parera, Julian Méndez Garcia), 1 postdoc (Javier Pardo Medina), and collaborates with Assistant Professor Julio Luis Rodriguez Romero. Laboratory Facilities: The group operates from offices (Room 223) and laboratories (Room 229) at the CBGP facilities in Montegancedo Campus, Madrid, with full molecular biology, genomics, and plant pathology capabilities.

• Catalysis
• Environmental Chemistry
• Materials Science
• +۵ مورد دیگر

Dr. Harsh Vardhan is a Postdoctoral Research Associate and Rice Academy Junior Fellow at Rice University's Department of Chemical & Biomolecular Engineering, working under Dr. Rafael Verduzco. His research focuses on covalent organic frameworks (COFs) for applications in PFAS degradation and selective metal ion removal from water. Previously, he held roles as a postdoctoral fellow at Northwestern-Argonne Institute of Science and Engineering and conducted doctoral research on COFs for heterogeneous catalysis at the University of South Florida. He has been recognized with multiple awards, including the Alexiou Award in Environmental Chemistry and Rice Academy Fellowship. Education: Ph.D. in Chemistry (University of South Florida, 2021), M.S. in Chemistry (Indian Institute of Technology-Kharagpur). His work bridges materials science, environmental engineering, and nanotechnology. Key projects include developing COF-based materials for ion rejection and catalytic processes, alongside pioneering CRISPR-Cas9 genome editing tools for therapeutic applications in sickle cell disease. Research Interests: Catalytic materials design Environmental remediation technologies Nanomaterials synthesis CRISPR-based gene editing Water purification systems Publications Trends: Over 15 peer-reviewed articles highlight his contributions to genome editing precision, CRISPR off-target mitigation, and COF material applications. Recent work emphasizes spatial control of gene editing and AAV vector engineering. Awards & Grants: Recipient of departmental research grants, travel awards, and student-nominated teaching accolades. Current funding includes the Rice Academy Fellowship supporting his PFAS degradation studies. Labs & Affiliations: Member of the Verduzco Polymer Engineering Laboratory at Rice. Collaborates with interdisciplinary teams on environmental and biomedical material innovations.

Geoffrey Bartonمشاهده پروفایل

استاد

• Bioinformatics
• Computational Biology
• Protein Structure Prediction
• +۴ مورد دیگر

Professor Geoffrey Barton is the Chair of Bioinformatics at the Computational Biology department within the School of Life Sciences at the University of Dundee . With a career spanning decades, he has been pivotal in advancing bioinformatics tools and methodologies for analyzing biological data, particularly in protein structure prediction and RNA sequencing. Core Research Interests : Protein structure and function prediction, computational methods for large biological datasets, small RNA analysis, and integration with wet-lab collaborations across plants, model organisms, and human disease. Awards : Fellow of the Royal Society of Edinburgh (2019) Fellow of the Royal Society of Biology (2011) Brian Cox Prize for Excellence in Public Engagement with Research (2023) Publications and Software : He leads the development of widely used tools like JPred (25,000+ predictions/month) and Jalview (55,000+ installations). His group's work spans proteomics, transcriptomics, and structural genomics, addressing questions in basic science and clinical applications. Media and Collaboration : Available for media commentary on bioinformatics and computational biology, he collaborates extensively with international institutions, including the University of Cambridge and Oxford.