Prof. Waldemar Kolanus leads the Molecular Immunology and Cell Biology department at the University of Bonn's Life & Medical Sciences Institute (LIMES) . His research bridges immunoregulation , stem cell dynamics , and metabolic stress responses in immune cells. Unit 2 member at LIMES Principal investigator in SFB 704 and ImmunoSensation Cluster Leads a multidisciplinary lab with postdocs, PhD students, and technical staff His work focuses on intracellular signaling pathways connecting immune activation to tissue homeostasis, particularly through: Cytohesin proteins in integrin-mediated adhesion and migration TRIM71 in stem cell regulation and congenital hydrocephalus High-salt environments affecting macrophage function Publication trends show expertise in immune cell migration , genetic models , and chemical inhibition , with frequent use of mice and zebrafish for in vivo studies. Key articles explore: TRIM71's dual role in auditory development and germ cell maintenance Cytohesin family's Golgi regulation and insulin signaling Ruxolitinib's off-target migration inhibition of dendritic cells Contact details: Address: LIMES Institute, Carl-Troll-Straße 31, Bonn Email: kolanus.sekretariat@uni-bonn.de Phone: +49 228 73-62788
Professor Urs Jenal is a Full Professor at the Biozentrum of the University of Basel, Switzerland, where he has led research on bacterial signal transduction since 2008. His laboratory investigates the molecular mechanisms of bacterial persistence and antibiotic resistance, with particular focus on pathogens causing chronic infections in humans. Previously, he served as Associate Professor (2002-2008) and Assistant Professor (1996-2002) at the same institution, and completed postdoctoral training at Stanford University and ETH Zurich. Education 2000: Habilitation and VENIA DOCENDI in Microbiology, University of Basel 1987-1991: PhD in Molecular Microbiology, ETH Zurich (supervisor: Prof. T. Leisinger) 1982-1986: Studies of Experimental Biology, ETH Zurich 1977-1981: Gymnasium with Matura Type C, Chur Research Focus Prof. Jenal's research centers on understanding how bacterial pathogens persist in the human body despite antibiotic treatments. His laboratory investigates cyclic nucleotides, particularly c-di-GMP, as signaling molecules that control bacterial biofilm formation, virulence, and antibiotic tolerance. His team studies pathogenic Escherichia coli causing recurrent urinary tract infections and Pseudomonas aeruginosa causing long-term lung infections in cystic fibrosis patients. Recent work has revealed how "sleeping" bacteria survive antibiotic treatments and how pathogens breach respiratory epithelia through goblet cell invasion. Scientific Recognition 2014: Elected member of the European Academy of Microbiology (EAM) 2013: ERC Advanced Investigator Award 2012: Elected member of the European Molecular Biology Organization (EMBO) 2011: Elected member of the American Academy of Microbiology (AAM) Mentorship and Collaborations Prof. Jenal has mentored numerous PhD students and postdocs, many receiving awards for their research. His laboratory is part of the NCCR AntiResist initiative focused on developing novel approaches against antibiotic resistance. He collaborates extensively with clinical researchers and has developed innovative models, including human mini-lungs, to investigate pathogen-host interactions. His recent publications demonstrate how understanding bacterial persistence mechanisms can lead to new therapeutic strategies against chronic infections.
Finlay Maguire is an Assistant Professor jointly appointed in the Faculty of Computer Science and the Department of Community Health & Epidemiology at Dalhousie University. He leads the Maguire Lab, which develops data-driven methods to address health and social crises through genomic epidemiology and interdisciplinary health data science. He is also affiliated with the Shared Hospital Laboratory, Sunnybrook Research Institute, and multiple national and international public health consortia including PHA4GE, CanCOGeN, and IRIDA. PhD: University College London / Natural History Museum (2016) MA: University of Oxford (2011) Donald Hill Family Fellowship, Dalhousie University (2021) Dr. Maguire's research focuses on two main areas: genomic epidemiology of infectious diseases and interdisciplinary health data science collaborations . His work in genomic epidemiology includes developing bioinformatics and machine learning tools to study antimicrobial resistance (AMR) and SARS-CoV-2 dynamics, often in collaboration with public health agencies. His broader health data science work addresses issues such as online radicalization, healthcare access for refugees, and autism-related language use, combining computational methods with social science. His recent publications (2023–2025) reflect a strong trend in pathogen genomics , AMR , zoonotic spillover , and computational social science . He has published on novel coronaviruses in bats, SARS-CoV-2 animal models, invasive Group A Streptococcus, and sociological analyses of incel communities. Much of this work involves tool development (e.g., ArgNorm, Pathoplexus) and data standardization (e.g., PHA4GE metadata standards). Finalist, 2024 Discovery Awards (Emerging Professional) 2023 President’s Research Excellence Award for an Emerging Investigator, Dalhousie Finalist, 2023 Discovery Awards (Emerging Professional) Funding from CIHR, NSERC, Genome Canada, SSHRC, BMGF Dr. Maguire actively mentors graduate students and postdocs, including PhD candidates in Computer Science and MSc students in Community Health & Epidemiology. He has secured major training grants such as the CIHR Health Research Training Platform and the Canadian One Health Training Program for Emerging Zoonoses. He also contributes to capacity-building initiatives like MicroResearch in Ghana and Kenya. The Maguire Lab is embedded in a rich network of collaborations, including the CARD database, Public Health Agency of Canada, Canadian Food Inspection Agency, and Sunnybrook Health Sciences Centre. The lab emphasizes open science, reproducible research, and interdisciplinary training, as seen in the development of open-source tools and participation in international consortia.
Jennifer L. Clarke is a Professor in the Department of Statistics at the University of Nebraska–Lincoln and Director of the Quantitative Life Science Initiative. She holds leadership roles in enabling big data integration across the University of Nebraska system through collaborative research programs. Her affiliations include the Institute of Agriculture and Natural Resources (IANR) and the College of Agriculture and Natural Resources. Dr. Clarke's research focuses on statistical methodology for high-dimensional data, computational biology, bioinformatics, and bacterial genomics. Her work bridges statistical innovation with applications in oncology, microbiome analysis, and agricultural phenomics. Key areas include predictive modeling, machine learning, and genomic/metagenomic data integration. Her recent publications span cancer biomarker discovery, plant phenotyping methodologies, and microbial community analysis, reflecting her interdisciplinary approach. Articles emphasize translational applications like therapeutic target identification and precision agriculture. Dr. Clarke leads initiatives fostering collaboration between statisticians and domain scientists, including the Quantitative Life Science Initiative and contributions to the Agricultural Genome-to-Phenome Initiative (AG2PI). Her work advances data-driven solutions for healthcare and food security challenges. Notable projects include developing statistical tools for microbiome studies, analyzing root architecture via 3D imaging, and investigating cranberry-derived compounds' cancer-inhibitory mechanisms. Her methodological contributions include hybrid clustering techniques and predictive model validation frameworks.
Xiang Ji is an Assistant Professor in the Department of Mathematics at Tulane University, affiliated with the School of Science & Engineering. His research focuses on statistical phylogenetics, computational biology, and bioinformatics, particularly in viral evolution and genomic epidemiology. He collaborates with Dr. Wu-Min Deng on cancer biology research from a bioinformatics perspective. Education: Ph.D., 2017: Bioinformatics and Statistics (Co-Major), North Carolina State University M.S., 2013: Material Science and Engineering, North Carolina State University B.S., 2011: Economics (Double Major) and Physics, Peking University Research Interests: Dr. Ji develops statistical models and computational tools for phylogenetic analysis, including scalable algorithms for large-scale genomic data. His work spans viral evolution, zoonotic disease surveillance, and parallel computing libraries for Bayesian inference. He emphasizes practical implementations such as Torchtree and TreeFlow . Articles Trends: Recent publications emphasize viral evolution dynamics (e.g., SARS-CoV-2, avian influenza), genomic surveillance strategies, and computational methods for phylogenetic inference. His work often bridges statistical theory with real-world applications in public health and epidemiology. Advising & Grants: While specific grant details are not listed, his active research program indicates involvement in funding initiatives related to computational biology and viral evolution. He teaches advanced courses in data analysis, linear models, and probability theory. Labs & Teams: Collaborates with Tulane’s Cancer Biology group and maintains partnerships with institutions globally, focusing on genomic epidemiology and phylogenetic software development.
David Blair is a Professor at James Cook University, specializing in parasitic flatworms, molecular systematics, and evolutionary biology. His research focuses on understanding the genetic diversity, phylogeography, and host-parasite interactions of species such as Schistosoma, Paragonimus, and Opisthorchis. He has contributed extensively to studies on the molecular evolution of parasitic organisms and their implications for human and wildlife health. Key research areas include: molecular taxonomy of trematodes, phylogenetic analysis of parasitic flatworms, and genomic studies of host-parasite coevolution. Collaborations span global institutions, addressing public health challenges like paragonimiasis and fasciolosis. His work integrates field studies, lab-based molecular techniques, and computational biology to unravel evolutionary dynamics and ecological adaptations. Recent studies focus on the genetic diversity of Daphnia species, dugong population genetics, and drug-resistant Mycobacterium tuberculosis. His publications in journals like *Parasitology*, *Molecular Phylogenetics and Evolution*, and *Scientific Reports* highlight interdisciplinary approaches to parasitology and conservation biology.
Nicholas Kortessis is an Assistant Professor in the Department of Biology at Wake Forest University, within The Undergraduate College. His research lies at the intersection of ecology, evolution, and theoretical modeling, focusing on how environmental variability shapes biological diversity. Research Interests: His primary areas include statistical and theoretical ecology, adaptation in variable environments, population and community dynamics, and ecosystem modeling. He uses mathematical frameworks to simulate ecological processes across large spatial and temporal scales, bridging experimental data with predictive theory. Publication Trends: His recent work spans topics such as habitat fragmentation, disease in invasive species, character displacement, seed dormancy evolution, and pandemic transmission dynamics. These reflect a strong emphasis on theoretical and synthetic approaches to ecological problems, often involving collaboration across institutions. Scientific Awards: No awards are mentioned in the provided text. Advising and Grants: While no specific students or grants are listed, Dr. Kortessis leads an active research lab and collaborates widely, indicating ongoing mentorship and likely grant-supported research. His lab engages in theoretical and data-driven ecological studies, suggesting funding from agencies supporting environmental and theoretical biology. Labs and Teams: He runs the Kortessis Lab at Wake Forest University, which focuses on modeling ecological and evolutionary processes. The lab emphasizes mathematical and conceptual tools to explore biodiversity, coexistence, and ecosystem responses to environmental change.
Lawrence Goodridge is a Professor and Director of the Canadian Research Institute for Food Safety (CRIFS) at the University of Guelph's Ontario Agricultural College. He holds the Leung Family Professorship in Food Safety and leads research at the intersection of food safety, antibiotic resistance, and One Health principles. His work focuses on applying genomic technologies to study foodborne pathogens (E. coli, Salmonella, Listeria, Cronobacter) and leveraging wastewater surveillance for infectious disease outbreak prediction. Academic History: BSc Microbiology (University of Guelph, 1995), MSc Food Microbiology (2003), PhD Food Microbiology (2002), followed by post-doctoral training in Food Safety at the University of Georgia (2002). Joined CRIFS in 2003. Research Interests: Genomic analysis of pathogen emergence, wastewater-based epidemiology, bacteriophage applications, and consumer education strategies for food safety. His lab develops innovative methods for rapid pathogen detection in food systems and environmental samples. Articles Trends: Over 100 peer-reviewed publications emphasize genomic surveillance of foodborne pathogens and SARS-CoV-2, with a focus on wastewater sampling innovations. Recent work explores multi-modal data integration for public health forecasting and ethical data protection frameworks for surveillance programs. Awards: While no specific prizes are listed, his $50M+ research funding from Canadian/international sources underscores recognition of his impactful work. Grants support projects like phage-based sanitization and antimicrobial resistance tracking. Advising & Labs: Leads CRIFS laboratory operations and collaborates globally on food safety initiatives. His research has informed food industry guidelines and policy frameworks for mitigating pathogen risks in agricultural and environmental systems.
Prof. Dr. Oliver Krüger is a behavioral ecologist and evolutionary biologist at Bielefeld University 's Faculty of Biology , where he leads the Department of Animal Behaviour since 2013. His research spans avian and marine mammal systems, focusing on life history strategies, parasite-host interactions, and environmental adaptation. Education: Biology studies at Bielefeld University (1994-1996) MSc in Oxford (1996-1997) PhD at Bielefeld University with Fritz Trillmich and Jan Lindström (1998-2000) Research Themes: Behavioral ecology, evolutionary biology, and population dynamics across tropical and temperate ecosystems. Key projects include NC³ (Niche Choice/Construction) and studies on Galápagos sea lions, common buzzards, and pinniped species. Scientific Leadership: Spokesperson, SFB TRR 212 "NC³" (2018-2025) Advisory Board member: German Ornithologists Union, IUCN SSC pinniped group, German Primate Centre Peer review roles: Humboldt Foundation, DFG, HFSP, NSF Awards: Leopoldina Prize (2001) Niko Tinbergen Award (2008) DFG Heisenberg Professorship (2010-2015)
Professor Julia Gog is a leading academic at the University of Cambridge, holding the position of Professor of Mathematical Biology within the Department of Applied Mathematics and Theoretical Physics (DAMTP). She also serves as the David N. Moore Fellow and Director of Studies in Mathematics at Queens' College, Cambridge. Research Interests: Mathematics of infectious diseases Viral bioinformatics Influenza modelling Infectious disease dynamics Pathogen evolution Salmonella Affiliations: Cambridge Infectious Diseases (Principal Investigator) Queens' College, Cambridge (David N. Moore Fellow and Director of Studies) Department of Applied Mathematics and Theoretical Physics (DAMTP)
Joel Weadge is an Associate Professor in the Biology Department at Wilfrid Laurier University , Waterloo, Ontario. His research focuses on bacterial biofilms, glycobiology, and protein structure-function relationships. Contact: jweadge@wlu.ca , Office: BA425 (Bricker Academic). Education: PhD in Microbiology (University of Guelph, 2006) BSc (Hons) in Microbiology (University of Guelph, 2000) Research Interests center on bacterial biofilms as virulence factors in pathogens like E. coli and Salmonella . Key areas include: Structural and functional characterization of biofilm proteins (cellulose, curli fimbriae) Enzymology of carbohydrate modifications (acetylation, phosphoethanolamine transfer) Developing therapeutics targeting biofilm synthesis Biopolymer applications for medical/industrial use Publications highlight studies on Pseudomonas and Salmonella biofilm mechanisms, glycosyltransferases, and carbohydrate-active enzymes, with methodologies spanning X-ray crystallography to high-throughput biofilm profiling. Labs and Teams: The Weadge Lab investigates biofilm roles in food/water security and oral health, utilizing enzymology, mass spectrometry, and structural biology. Current members include graduate students, technicians, and research assistants.
Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .
Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.
Brian Hie is an Assistant Professor of Chemical Engineering at Stanford University , a Dieter Schwarz Foundation Stanford Data Science Faculty Fellow , and an Innovation Investigator at Arc Institute . He leads the Laboratory of Evolutionary Design , focusing on the intersection of biology and machine learning . His prior roles include a Stanford Science Fellow in the Stanford University School of Medicine and a Visiting Researcher at Meta AI . Education: Ph.D. , Electrical Engineering and Computer Science , Massachusetts Institute of Technology (2021) Bachelor’s Degree , Stanford University Research Interests: Brian’s work bridges machine learning and computational biology , with a focus on protein engineering , single-cell RNA sequencing , and viral evolution . His Evolutionary velocity framework predicts protein evolutionary dynamics across timescales, while his Scanorama algorithm enables efficient integration of heterogeneous single-cell datasets. He also develops structure-informed language models for antibody optimization and uncertainty-aware ML for biological discovery. Publication Trends: His recent work (2023) emphasizes structure-based inverse folding for antibody evolution, evolutionary scale modeling , and unsupervised optimization . Earlier studies (2022-2021) cover evolutionary velocity , multi-modal single-cell analysis , and viral escape prediction using natural language analogies. Scientific Awards: Stanford Science Fellow (2021) National Defense Science and Engineering Graduate Fellowship (2019) Advising: He mentors doctoral students including Brandon Ameglio , Garyk Brixi , and Chang M. Yun , with a focus on biological design and computational methods . Labs & Collaborations: His lab collaborates with Bio-X and the Institute for Human-Centered Artificial Intelligence (HAI) , and he maintains affiliations with Sarafan ChEM-H and Stanford Data Science .
Dr. Rachel Penczykowski is an Assistant Professor of Biology at Washington University studying disease ecology in changing environments. Her NSF CAREER Award supports research on urban plant pathogens, particularly powdery mildew epidemics in urban heat islands. Combining field observations, lab experiments, and mathematical modeling, she examines how climate, biodiversity loss, and urbanization reshape host-parasite interactions. Her work spans diverse ecosystems—from aquatic Daphnia-parasite systems to terrestrial plant-pathogen networks—revealing how predators, resources, and microclimates indirectly modulate disease spread. Current projects investigate warming impacts on fungal virulence and host resistance evolution in St. Louis-area plant populations. Dr. Penczykowski leads outreach through the PlantSTEM program, engaging K-12 students in pathogen research. She mentors high schoolers via Tyson Research Center apprenticeships and teaches Disease Ecology, integrating modeling with empirical approaches. Her lab collaborates with the Taylor Geospatial Institute to map urban microclimate-disease linkages.
