جستجوی استاد راهنمای دانشگاهی

• Bioinformatics
• Machine Learning
• Deep Learning
• +۵ مورد دیگر

Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

Jens S. Andersenمشاهده پروفایل

استاد

• Proteomics
• Quantitative Mass Spectrometry
• Cell Biology
• +۱۱ مورد دیگر

Jens S. Andersen is a Professor in the Department of Biochemistry and Molecular Biology at the University of Southern Denmark, where he leads research in Biomedical Mass Spectrometry and Systems Biology. His work is centered on the development and application of quantitative mass spectrometry and microscopy-based proteomics to study human cell biology, particularly the structure and function of organelles such as centrosomes, cilia, autophagosomes, and mitochondria. His research focuses on determining the protein composition and dynamic properties of cellular organelles, the roles of specific protein groups, and their contributions to biological processes and diseases. He investigates cell signaling mediated by post-translational modifications, especially within the DNA damage response, autophagy, and immune systems. His lab, the Jens S. Andersen Lab, is part of the Research Section of Biomedical Mass Spectrometry. The analysis of his recent publications reveals a strong interdisciplinary trend combining proteomics, structural biology, and cell signaling. His work spans cilia biology, RNA metabolism, DNA repair, and cancer mechanisms, with frequent use of advanced techniques like mass spectrometry, CRISPR, and live-cell imaging. The integration of systems biology approaches is evident across his research outputs. Professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark Head of Research, Biomedical Mass Spectrometry and Systems Biology Principal Investigator, Jens S. Andersen Lab ORCID: 0000-0002-6091-140X While no specific scientific awards are mentioned in the provided texts, his extensive publication record in high-impact journals such as Science , Nature Communications , Molecular Cell , and EMBO Journal reflects significant scholarly contributions. He has supervised research projects and collaborated widely across Europe, though specific names of students are not listed. His research is supported by multiple ongoing projects, reflecting sustained funding and academic leadership. The Jens S. Andersen Lab operates at the intersection of proteomics and cell biology, contributing to fundamental understanding of organelle dynamics and disease mechanisms. The lab's work is highly collaborative, involving partnerships with groups in structural biology, RNA research, and cancer biology.

Ole Nørregaard Jensenمشاهده پروفایل

استاد

• Mass Spectrometry
• Proteomics
• Posttranslational Modification
• +۹ مورد دیگر

Ole Nørregaard Jensen is a Professor in Biomedical Mass Spectrometry and Systems Biology at the Department of Biochemistry and Molecular Biology, University of Southern Denmark . His research integrates advanced mass spectrometry, proteomics, and bioinformatics to study chromatin biology, post-translational modifications, and cellular signaling networks. He is actively involved in major research initiatives funded by Novo Nordisk Foundation and Lundbeck Foundation. His research interests include Mass Spectrometry, Proteomics, Posttranslational Modification, Histone Biology, Chromatin Biology, Bioinformatics, Systems Biology, Lipidomics, and Protein Chemistry . He employs cutting-edge techniques such as tandem mass spectrometry and ion mobility spectrometry to analyze protein isomers and dynamic modifications. His work has significant implications for understanding gene regulation, DNA replication, and disease mechanisms. His recent publications demonstrate a strong trend in chromatin dynamics, epigenetics, and integrated omics approaches , combining proteomics with transcriptomics and lipidomics to unravel complex biological systems. His research spans from fundamental molecular mechanisms to translational applications in biomedicine and food science. He has been recognized with several prestigious awards: MCP Lectureship Award Juan Pablo Albar Proteomics Pioneer Award 2019 EliteForsk 2009 prize Knight Order of Dannebrog (Ridder af Dannebrogordenen) Jensen is deeply involved in academic service, including peer review for journals like Nature Communications and Molecular and Cellular Proteomics , organizing conferences, and supervising students. He teaches courses such as Biomedical Mass Spectrometry - Principles and Applications and coordinates the Computational Biomedicine international Master’s program. He leads multiple active research projects, including PLATO and INTEGRA, focusing on health data, imaging, and protein networks. He is a key member of a vibrant research environment in biomedical mass spectrometry at SDU, contributing to both national and international scientific collaborations. His lab is at the forefront of developing and applying novel mass spectrometry methodologies for systems biology.

Lars Aagaardمشاهده پروفایل

دانشیار

• Gene therapy
• RNA interference
• Viral vectors
• +۱۱ مورد دیگر

Lars Aagaard is an Associate Professor at the Department of Biomedicine - Research and Education, Aarhus University, Denmark. He is based at the Bartholin Building in Aarhus C and is actively engaged in research and teaching in the fields of gene therapy, RNA interference, and genome editing. His work focuses on developing viral vectors, particularly AAV and lentiviral vectors, for ocular gene therapy targeting retinal diseases such as age-related macular degeneration and diabetic retinopathy. His research interests include the development of Dicer-independent RNAi systems, combinatorial gene therapy using microRNA and CRISPR/Cas9, and the delivery of RNA- and protein-based therapeutics. He also teaches Genetics and Personalized Medicine and supervises postdoctoral researchers, PhD, master's, and undergraduate students. The recent publications (2022–2024) reflect a strong trend in RNAi therapeutics, viral vector engineering, and translational applications in ocular and systemic diseases. Themes include gene silencing, immune modulation, and regenerative approaches using engineered cells. Aagaard actively contributes to the scientific community as a reviewer for journals such as Nature and Molecular Therapy . He has participated in key international conferences including ARVO, ASGCT, and ESGCT, demonstrating ongoing engagement with the global gene therapy community. Supervision of postdocs, PhD, master’s, and undergraduate students Active participation in international conferences and workshops Collaborative research across institutions, including Universidade Federal de Sao Paulo He is involved in both basic and translational research, with potential for clinical applications in gene and cell therapy.

Sonia Corianiمشاهده پروفایل

استاد

• Quantum Chemistry
• Computational Spectroscopy
• Molecular Properties
• +۷ مورد دیگر

Sonia Coriani is a Professor in Physical Chemistry at DTU Chemistry, Technical University of Denmark, since 2017. She leads a research group focused on theoretical chemistry and computational spectroscopy. Her academic journey includes a PhD from Aarhus University (2000), a permanent research scientist position at the University of Trieste (1999-2014), and associate professorship there since 2014. She held an adjunct associate professor position at the Centre for Theoretical and Computational Chemistry in Oslo (2007-2011) and was a Marie Curie IEF fellow (2010-2012) and AIAS-COFUND senior fellow (2015-2016). Education: Chemistry, University of Modena (1993) PhD in Theoretical Chemistry, Aarhus University (2000) Her research centers on developing quantum-chemical methodologies for static and dynamic molecular properties, particularly for systems with high dimensionality, complex environments, or novel spectroscopic phenomena. Key areas include non-linear optical experiments, magnetic circular dichroism, X-ray spectroscopies, and quantum computing applications in chemistry. Her recent publications highlight advancements in quantum linear response theory, polarizable embedding environments, X-ray absorption in water, and quantum algorithms for molecular properties. Collaborative work spans interdisciplinary projects with experimentalists, covering gas-phase molecules to biomolecular systems. Scientific Awards: Marie Curie IEF fellowship AIAS-COFUND senior fellowship Her work addresses challenges in ultrafast dynamics, photoionization, and the intersection of chemistry with physics and computational science, emphasizing accuracy and novel experimental guidance.

Kristian Almstrupمشاهده پروفایل

دانشیار

• Genetics
• Epigenetics
• Reproduction
• +۹ مورد دیگر

Kristian Almstrup serves as Associate Professor at the Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, and holds a Senior Scientist position at the Department of Growth and Reproduction, Copenhagen University Hospital - Rigshospitalet. His dual appointment bridges clinical practice and academic research in reproductive genetics. Dr. Almstrup's research primarily focuses on the intersection of genetic and epigenetic variation with reproductive endpoints, testicular gene expression, and sperm cell function. His work has pioneered understanding of piRNAs in human spermatogenesis, genetic variants causing non-obstructive azoospermia, and genetic factors associated with testicular germ cell cancer. His group employs cutting-edge techniques including single-cell/nuclei methods and spatial transcriptomics to study the complex cellular composition of testicular tissue. Analysis of Almstrup's 15 most recent publications reveals a consistent focus on male reproductive genetics, with particular emphasis on non-coding RNAs (especially piRNAs), genetic determinants of spermatogenic failure, and environmental factors in declining fertility. His research spans from basic molecular mechanisms to clinical applications, with several publications in high-impact journals including Nature, Nature Communications, and the New England Journal of Medicine. Dr. Almstrup actively contributes to medical education through teaching in the Medical Genetics course for Medicine and Molecular Biomedicine students, as well as organizing PhD courses in Genetics of Reproduction. His editorial work includes serving as Editor for Andrology, Scientific Reports, and Frontiers in Cell and Developmental Biology. The Almstrup Group, based at Rigshospitalet, maintains an active research program with current team members including Nina Mørup Nygaard, Sofia B. Winge, Gülizar Saritas, Ailsa Maria Main, and Maria Lykkegaard Nicolaisen. The group participates in several international consortia including GEMINI, IMiGC, and TECAC, focusing on male infertility and testicular cancer genetics.

Kerstin Skovgaardمشاهده پروفایل

دانشگاهی

• Antiviral Immunology
• Zoonotic Influenza
• Translational Research
• +۹ مورد دیگر

Kerstin Skovgaard is a Senior Researcher at the Department of Biotechnology and Biomedicine , Technical University of Denmark . Her work focuses on antiviral immunology with emphasis on zoonotic influenza viruses and metabolic syndrome's impact on infection severity . She develops translational animal models for innate immune research in respiratory infections and post-traumatic conditions . Research Interests Antiviral Immunology of influenza A viruses and PEDV Metabolic Syndrome and obesity-related immunity Translational models for respiratory diseases and gut-brain axis miRNA profiling in equine osteoarthritis and porcine infections Immunomodulatory diets with algae and probiotics Biomarker discovery through proteomics and RT-qPCR Scientific Contributions include 202+ publications across influenza , gut immunity , and joint inflammation . Her recent 15 articles demonstrate expertise in porcine models for human diseases , with emphasis on innate immune responses , miRNA dynamics , and metabolic-immune interactions . Supervision includes PhD students : J. Pina Agullet B. L. Henriksen C. J. M. Polhaus H. A. Laybourn C. López-Figueroa Methodologies encompass microfluidic qPCR , RNA-Seq , and advanced in vitro systems . Her research supports UN Sustainable Development Goals through cost-efficient diagnostics and therapeutic development .

Anja Grothمشاهده پروفایل

استاد

• Molecular Cell Biology
• Epigenetics
• DNA Repair
• +۳ مورد دیگر

Anja Groth, 43 years old, is a full professor at the Biotech Research and Innovation Centre (BRIC) under the University of Copenhagen's Faculty of Health Sciences. Her research centers on molecular cell biology, epigenetics, DNA repair, and genome stability, with significant contributions to understanding how cells maintain functional memory during division—a critical process for both human development and cancer progression. Education: MSc in Biochemistry, University of Copenhagen PhD in Cancer Biology, University of Copenhagen (2004) Postdoc at Institut Curie, Paris (3 years) Her groundbreaking work on DNA repair mechanisms revealed a protein critical for cancer cell survival through error-free DNA repair. This discovery is paving the way for novel cancer therapies that block this protein. Using advanced molecular biology and interdisciplinary collaboration, she has published in top journals like Nature and secured two major ERC grants. Key Research Themes: Epigenetic memory and chromatin replication DNA damage repair pathways Histone dynamics and inheritance Replication fork stability Protein networks in genome maintenance Articles show a consistent focus on histone chaperones, ubiquitination pathways, and chromatin assembly factors. Her 2016 discovery of H4K20me0 marks and the TONSL–MMS22L complex has had lasting impacts on DNA repair research. Awards & Grants: EliteForsk Award (2018) EMBO Investigator Heirloom Award for Women Scientist Leaders ERC Starting Grant ERC Consolidator Grant As leader of a diverse research group of 15 international scientists (primarily women), Groth emphasizes collaborative innovation and trust-building in scientific environments. She advocates for sustainable lab practices and flexible research strategies that allow unexpected discoveries.

• Epitranscriptomics
• RNA Biology
• Ribozymes
• +۴ مورد دیگر

Henrik Nielsen is a Professor with special responsibilities at the University of Copenhagen's Department of Cellular and Molecular Medicine, where he leads research in the Transcription, RNA, and Gene Medicine Program. His academic journey includes a Master's (1983) and PhD (1990) in Molecular Biology from the University of Copenhagen. He has held progressive academic positions since 1984, including Associate Professorships at the University of Copenhagen and University of Tromsø, before attaining his current professorship. His research focuses on RNA biology with emphasis on: Epitranscriptomics and specialized ribosomes in immune function, development, and cancer Catalytic RNA mechanisms including ribozymes and splicing RNA-guided nucleotide modifications and helicase functions Novel RNA cap structures and lariat capping ribozymes Recent publications (2021-2024) demonstrate strong focus on ribosomal RNA modifications, ribosome heterogeneity, and their functional impacts across biological systems including skeletal muscle, stem cells, and microbial organisms. The work consistently integrates molecular biology with physiological contexts. Awards include: Teacher of the Year 1998 from the Health Science Faculty He leads the H Nielsen research group and maintains active collaborations through networks including InnControl (Norwegian Research Council) and COST Translacore. Key collaborators span institutions in Copenhagen, Göttingen, Toulouse, and Stockholm.

• Artificial Intelligence
• Machine Learning
• Computational Biology
• +۳ مورد دیگر

Aiyu Liu is a Lecturer at the Department of Computer Science, University of Copenhagen. She is affiliated with the Pioneer AI (P1AI) section, which specializes in foundational research across artificial intelligence, machine learning, computer vision, medical imaging, statistics, and geometry. University: University of Copenhagen Department: Department of Computer Science Email: aiyu@di.ku.dk Research Interests: Aiyu's work intersects computational biology and machine learning, focusing on: Single-cell RNA sequencing analysis Epithelial-mesenchymal transition (EMT) modeling Gene regulatory network inference Medical imaging applications Computational oncology RNA interaction networks Publications Overview: Aiyu's research spans 8 years (2016-2023) with significant contributions to computational biology. Key trends include: Single-cell transcriptomics for cellular heterogeneity Machine learning applications in cancer genomics Modeling RNA regulatory mechanisms Computational approaches to developmental biology Algorithm development for high-throughput data analysis Systems biology of disease progression

Steffan Noe Niikanoff Christiansenمشاهده پروفایل

پژوهشگر ارشد

• Genetics
• Cardiology
• Molecular Biology
• +۵ مورد دیگر

Steffan Noe Niikanoff Christiansen serves as a Postdoctoral Researcher at the Department of Health Science and Technology within the Faculty of Medicine at Aalborg University, Denmark. His research program focuses on elucidating the genetic and epigenetic mechanisms underlying sudden cardiac death in young individuals, with particular emphasis on calmodulinopathies and DNA methylation patterns in cardiac tissues. His academic credentials include: PhD in Oral Sciences, Forensic Medicine and Bioanthropology from the University of Copenhagen (2017-2022) MSc in Molecular Medicine from Aarhus University (2014-2016) BSc in Molecular Medicine from Aarhus University (2011-2014) Christiansen's research integrates molecular cardiology with forensic applications, investigating how DNA and RNA variations contribute to cardiac arrhythmias and sudden death. His work addresses critical challenges in variant interpretation by examining calmodulin gene mutations (CALM1/CALM2/CALM3) and epigenetic modifications, particularly DNA methylation alterations in cardiac development and postmortem tissues. This research has significant implications for improving genetic testing accuracy and risk stratification in clinical and forensic contexts. Analysis of his publication trajectory reveals a pronounced methodological focus on epigenetic techniques, with increasing specialization in cardiac methylation patterns since 2021. His recent work demonstrates sophisticated integration of genomic technologies across cardiac and neurological contexts, consistently bridging basic science with clinical applications through advanced bioinformatics approaches. As Principal Investigator of the Danish Cardiovascular Academy project "The Deadly, the Deleterious, and the Dangerous – Decoding the Differential Pathogenicity among CALM1, CALM2, and CALM3" (2024-2026), Christiansen leads a multi-institutional collaboration investigating calmodulin variant pathogenicity. This project involves key partners including the University of Copenhagen and international experts in cardiac genetics. He actively contributes to methodological advancement through tools like the "Snpbeadchip" R package for genomic analysis, while maintaining active collaborations across Danish research institutions as evidenced by his network map showing extensive domestic and international connections.

• Hematology
• Oncology
• Epidemiology
• +۵ مورد دیگر

Morten Rytter Tulstrup serves as a Lecturer in the Department of Public Health within the Faculty of Health and Medical Sciences at the University of Copenhagen. His academic affiliation centers on the Section of Biostatistics, where he conducts research at the intersection of hematology, epidemiology, and pharmacovigilance. His institutional address is Øster Farimagsgade 5 opg. B, 1353 København K. His research spans hematological malignancies, clonal hematopoiesis, and drug safety assessment. Key focus areas include: Mendelian randomization studies for causal inference in testosterone therapy DNA methylation alterations in myelodysplastic syndromes Epidemiological patterns of anabolic steroid complications Clonal evolution in multiple myeloma and acute leukemias Pharmacovigilance methodologies for adverse drug reactions His work integrates genomic, epigenetic, and population-level data to address clinical questions in hemato-oncology. Analysis of his 16 recent publications (2023-2025) reveals consistent focus on hematological disorders with emerging emphasis on Mendelian randomization techniques. His collaborative network spans Danish hospitals and international consortia, particularly in studies involving large population cohorts and genomic databases. Key publication venues include Leukemia , Haematologica , and specialized pharmacology journals. No scientific awards are currently documented in available sources. His research impact is evidenced by social media dissemination across X (formerly Twitter), Bluesky, and Mendeley readership, with several studies picked up by news outlets. Tulstrup participates in multi-institutional collaborations, notably with Rigshospitalet and Copenhagen University Hospital departments. His current work involves Danish population-based studies on clonal hematopoiesis (e.g., COVID-19 hospitalization research) and testosterone-related adverse events. He appears integrated within the university's hematology research ecosystem but no dedicated lab leadership is indicated.

• Molecular microbiology
• RNA biology
• Bacterial pathogenesis
• +۴ مورد دیگر

Jens Sivkær Pettersen is a Postdoctoral Researcher at the Department of Biochemistry and Molecular Biology , University of Southern Denmark, with guest researcher status at Karolinska Institute, Odense University Hospital. His work focuses on molecular microbiology, particularly RNA-mediated regulation in bacterial pathogens. Education : PhD in RNA biology of Streptococcus pneumoniae (2023) Key collaborations : Jakob Møller-Jensen, Morten G. Jørgensen, Tobias E. Andersen Research interests span bacterial pathogenesis, regulatory networks, RNA biology, and host-environment interactions. Recent studies explore: Pneumococcal adaptation to human bodily fluids RNA regulatory mechanisms in Gram-positive pathogens Antimicrobial properties of marine compounds Two-component signal transduction systems Publications (2020-2024) reveal expertise in: Streptococcus pneumoniae pathogenesis Uropathogenic E. coli surface dynamics Bioinformatic analysis of regulatory elements RNA-based virulence control

Sebastian Marquardtمشاهده پروفایل

دانشیار

• Non-coding Genome
• RNA Processing
• Chromatin Biology
• +۵ مورد دیگر

Dr. Sebastian Marquardt is an Associate Professor in the Department of Plant and Environmental Sciences at the University of Copenhagen , leading the Molecular Plant Biology section. His research focuses on uncovering molecular mechanisms of the non-coding genome and its role in organismal fitness. Education : PhD in Biological Sciences from the University of East Anglia (dissertation: Linking RNA Processing to Chromatin via Flowering Time Study) Research interests include: RNA polymerase II transcription in non-coding regions Short promoter-proximal RNAs (sppRNAs) and their correlation with gene expression Chromatin-based signaling during transcriptional interference Co-transcriptional RNA processing and modification Recent publications address topics like non-coding RNA isoforms in food security, co-transcriptional miRNA processing, and histone chaperone mechanisms in Arabidopsis. His work emphasizes transcriptional dynamics over RNA product functionality. Scientific awards include: EMBO Young Investigator Program (2020) Hallas-Møller Investigator Award (2015) European Research Council Starting Grant (2017) Novo Nordisk Ascending Investigator (2021) Marquardt supervised BSc thesis student Julie Overgaard Hansen and hosted researcher Lucia Gonzalo (2023). His laboratory developed innovative methods for detecting non-coding transcription units missed by conventional approaches.

Anna Sherwoodمشاهده پروفایل

استادیار

• RNA Biology
• Virology
• Computational Biology
• +۳ مورد دیگر

Anna Sherwood is an Assistant Professor in the Department of Biology at the University of Copenhagen, specializing in Computational and RNA Biology. She holds a PhD in Molecular, Cellular and Developmental Biology from Ohio State University (awarded 2015), where her thesis focused on T-box riboswitch gene regulation in Actinobacteria. Her research bridges RNA biology , virology , and plant genetics , with emphasis on RNA modifications (e.g., m6A), viral RNA mechanisms (HCV), spliceosome dynamics, and riboswitch-mediated gene regulation. She employs cutting-edge methods like nanopore direct RNA sequencing and computational genomics. Publications (2016–2023) reveal consistent themes: RNA epitranscriptomics in plants/viruses, spliceosomal regulation, and evolutionary genetics of crops. Noteworthy articles include a 2023 Nature study on HCV RNA capping and a 2022 Nature Communications paper on yam chromosome evolution. No awards, students, or grants are detailed in available sources.