جست‌وجوی استاد و پژوهشگر

Berta Verdمشاهده پروفایل

پژوهشگر ارشد

• Evolution of Development
• Dynamical Systems Theory in Biology
• Embryonic Axial Elongation and Segmentation
• +۳ مورد دیگر

Berta Verd is the Peter Brunet Fellow in Biological Sciences at Jesus College, University of Oxford. She holds a BSc in Mathematics from the Polytechnic University of Catalonia, followed by an MSc in Medicine, Science and Society from King’s College London, an MRes in Systems and Synthetic Biology from Imperial College London, and a PhD in Biomedicine from Pompeu Fabra University. Her research focuses on evolutionary developmental biology, applying dynamical systems theory to biological problems such as embryonic axial elongation, segmentation, and cichlid fish evolution. She teaches Biology courses at Jesus College and actively contributes to interdisciplinary research in developmental dynamics. Her work explores the modularity of segmentation clocks, the role of cell movements in pattern formation, and evolutionary processes in African cichlids. Recent studies include analyses of skeletal diversity in Lake Malawi cichlids using micro-CT imaging and computational modeling of gene regulatory networks. She also investigates critical transitions in developmental systems and the interplay between morphogen gradients and positional information. Advising and grants: No student advisees or grant details are explicitly listed in the provided texts. Her research is supported through her fellowship and institutional affiliations. She is associated with labs focused on systems biology and evolutionary developmental biology at the University of Oxford and collaborating institutions. Labs/Teams: While specific lab names are not mentioned, her research aligns with interdisciplinary teams studying developmental dynamics, evolutionary biology, and systems approaches in the Biological Sciences department at Oxford.

Aydan Bulut-Karslıoğluمشاهده پروفایل

استادیار

• Embryonic diapause
• Stem cell state transitions
• Fate commitment
• +۷ مورد دیگر

Dr. Aydan Bulut-Karslıoğlu is a Research Group Leader at the Max Planck Institute for Molecular Genetics in Berlin, where she leads the Bulut-Karslıoğlu Lab focused on gene-environment interactions in stem cells and development. Her work has significantly advanced our understanding of embryonic diapause and stem cell state transitions. Dr. Bulut-Karslıoğlu's educational background includes: B.Sc. in Chemical Engineering (major) and Biology (minor) from Middle East Technical University, Ankara, Turkey (2006) M.Sc. in Molecular Biology and Genetics from Bilkent University, Ankara, Turkey (2008) Ph.D. from Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany (2013) Her research focuses on mechanisms regulating stem cell state transitions and fate commitment, particularly how cells communicate signals from their surroundings to the gene expression machinery. She has pioneered work on mammalian embryonic diapause - a reversible dormant state that gives embryos extra time to develop. Her lab uses a combination of functional perturbation methods in stem cells and early mouse embryos with omics, imaging, and biochemistry to reveal how genetic networks adjust to the status of the embryo. Analysis of her recent publications reveals a strong focus on the epigenetic and metabolic regulation of embryonic diapause, with particular emphasis on mTOR signaling, lipid metabolism, and DNA methylation dynamics. Her work bridges developmental biology, stem cell research, and metabolism, demonstrating how environmental cues like oxygen levels and nutrient availability influence developmental timing and cell fate decisions. Her notable scientific achievements include: Sofja Kovalevskaja Award (2018) ERC Starting Grant (2023) ERC Proof of Concept Grant (2025) GSCN Young Investigator Award (2025) Dr. Bulut-Karslıoğlu actively mentors the next generation of scientists, currently supervising multiple PhD students including Persia Akbari-Omgba, Anastasios Balaskas, Heleen Mallie, and Gunwant Patil. Her lab has received substantial funding through prestigious grants, including the Sofja Kovalevskaja Award, ERC Starting Grant, and ERC Proof of Concept Grant, enabling her team to pursue innovative research at the intersection of developmental biology and metabolism. The Bulut-Karslıoğlu Lab maintains a vibrant research environment with both computational and experimental scientists working together to unravel the mysteries of embryonic diapause and stem cell regulation. The lab actively participates in the International Max Planck Research School for Biology And Computation (IMPRS-BAC), contributing to the training of doctoral candidates at the interface of molecular life sciences and computational sciences.

Amy Cherie Ralstonمشاهده پروفایل

استاد

• Mouse Embryonic Development
• Pluripotent Stem Cells
• Cell Signaling Pathways
• +۳ مورد دیگر

Amy Cherie Ralston is a Professor at Michigan State University's College of Natural Science in the Department of Biochemistry & Molecular Biology , where she also serves as Associate Dean - Graduate Studies . Her research focuses on the genetic and molecular mechanisms governing early mouse embryonic development, particularly the specification of pluripotent and extraembryonic lineages. Education: Ph.D. in Zoology, University of Wisconsin (2004) B.A. in Biochemistry, Oberlin College (1995) Research Interests encompass mouse embryonic development, pluripotent stem cell regulation, HIPPO signaling pathway functions, and transcription factor dynamics during lineage specification. She has extensively studied the roles of OCT4, SOX2, Cdx2, and TEAD4 in developmental fate determination. Publications highlight trends in mouse blastocyst lineage segregation, stem cell maintenance mechanisms, and signaling pathway interactions. Notable work includes studies on HIPPO pathway members' restriction of pluripotency factors and culture condition impacts on developmental signaling. Students and Lab : Dr. Ralston leads the Ralston Laboratory, mentoring graduate and postdoctoral researchers in developmental biology and stem cell research. While specific student names aren't listed, her lab's work has produced significant insights into extraembryonic endoderm stem cell lines and transcription factor functions in reprogramming.

Boris Landaمشاهده پروفایل

استادیار

• Statistical Signal Processing
• Geometric Data Analysis
• Manifold Learning
• +۵ مورد دیگر

Boris Landa is an Assistant Professor in the Department of Electrical & Computer Engineering at Yale University. His research focuses on statistical signal processing and geometric data analysis, developing theoretical and computational tools for analyzing large, complex datasets. He holds a Ph.D. and M.S. from Tel Aviv University, Israel, and a B.S. from the Technion - Israel Institute of Technology. His work bridges computational methods with applications in molecular biology, cryo-electron microscopy, and high-dimensional data analysis. Notable contributions include robust inference of manifold geometry, doubly stochastic scaling techniques, and multi-reference factor analysis for alignment problems. Recent research explores optimal transport metrics for single-cell data and noise stabilization in signal recovery. Landa's publications span prestigious journals such as SIAM Journal on Mathematics of Data Science and Information and Inference. His methodologies address challenges in manifold learning, graph Laplacian normalization, and biological dataset integration. Active areas include developing adaptive algorithms for low-rank signal detection and robust statistical techniques for heterogeneous data. His educational background includes advanced studies in applied mathematics and engineering, with a strong emphasis on interdisciplinary applications. Ongoing projects involve geometric approaches to omics data analysis and scalable solutions for large scientific imaging datasets.

• Molluscan Evolution
• Evolutionary Biology
• Developmental Biology
• +۳ مورد دیگر

Tim Wollesen is an Associate Professor in the Department of Evolutionary Biology at the Faculty of Life Sciences. His research focuses on molluscan evolution, neurogenesis, and developmental genetics, particularly in cephalopods, scaphopods, and chaetognaths. He has led projects funded by the Schrödinger Grant and collaborates internationally on topics like Hox gene expression and single-cell transcriptomics. Research interests include evolutionary developmental biology (evo-devo), comparative genomics, and the molecular mechanisms underlying body plan diversification. Recent studies explore the genetic basis of shell formation, nervous system evolution, and ancestral cell type conservation in spiralians. Notable contributions include analyzing developmental gene expression in squid eyes, sequencing chaetognath transcriptomes, and elucidating Hox gene roles in molluscan body plans. His work bridges molecular biology with evolutionary questions, contributing to UN Sustainable Development Goals through biodiversity research. Received Schrödinger Grant (2018) to support evolutionary research Active in international conferences, presenting on bioadhesives and molluscan cell types Lead researcher on projects like 'Elucidating molluscan evolution by single cell sequencing' (2021–ongoing) His lab focuses on integrative approaches combining genomics, microscopy, and developmental biology to decode evolutionary innovations in invertebrate lineages.

Sara K. Olsonمشاهده پروفایل

دانشیار

• Developmental Biology
• Cell Biology
• Molecular Biology
• +۸ مورد دیگر

Sara K. Olson is an Associate Professor of Biology in the Department of Biology at Pomona College, part of The Claremont Colleges. She has been at Pomona since 2012 and is based in Seaver Biology, where she leads a research lab focused on extracellular matrix dynamics during fertilization and early embryonic development in C. elegans . Her research explores the assembly and function of the nematode eggshell, using fluorescence microscopy, molecular genetics (including CRISPR), and biochemical approaches. A major goal is to identify evolutionarily conserved versus divergent mechanisms of eggshell formation, with implications for understanding basic developmental biology and targeting parasitic nematodes. Olson's scientific work has been supported by the National Science Foundation (NSF), the Research Corporation, and the Beckman Foundation. She has led or co-led several major grants, including an NSF CAREER Award and the Beckman Scholars Program. She is also deeply committed to inclusive pedagogy and undergraduate research, frequently involving students in authentic research experiences (CURE-based labs) and co-authoring publications with them. Her recent publications highlight a consistent focus on eggshell permeability, cortical granule exocytosis, proteoglycans, and glycan biology in C. elegans , with increasing integration of CRISPR and educational applications. The research demonstrates a strong interdisciplinary approach combining cell biology, biochemistry, and genetics. Wig Award for Teaching Excellence 7C Faculty Diversity Award for Teaching National Academies Education Fellow NIH IRACDA Postdoctoral Training Award Phi Beta Kappa She advises numerous undergraduate researchers and has mentored multiple students who have co-authored her publications. Her lab operates at the intersection of basic science and science education, promoting accessibility and diversity in STEM. She is also active in national efforts to bring CRISPR technology into undergraduate classrooms through networked teaching initiatives.

Anna Caiمشاهده پروفایل

مدرس

• Mathematical Biology
• Biomathematics
• Mathematical Modeling
• +۳ مورد دیگر

Dr. Anna Cai is a Lecturer in the Department of Applied Mathematics within the School of Mathematics & Statistics at the University of New South Wales (UNSW), a position she has held since 2011. Prior to this, she served as a postdoctoral researcher and lecturer at the University of California, Irvine from 2007 to 2011. Her educational background: Ph.D., The University of Melbourne, 2008 B.Sc. (First Class Honours), The University of Melbourne, 2004 Dr. Cai's research centers on Mathematical Biology , with specialization in cell migration dynamics , developmental pattern formation , and robustness in biological systems . She employs multi-scale mathematical modeling and stochastic analysis to investigate phenomena ranging from wound healing to zebrafish hindbrain development. Her work bridges theoretical mathematics with experimental biology to decode fundamental mechanisms governing cellular behavior and morphogenesis. Analysis of her 11 publications (2006-2015) reveals an evolutionary trajectory from foundational work on cell migration mechanics to sophisticated studies of developmental robustness. Early research established mathematical frameworks for wound-healing assays and immune cell dynamics, while later work pioneered noise-driven pattern formation models in zebrafish. A unifying thread is her focus on how biological systems maintain precision despite environmental fluctuations. Administrative responsibilities include: Applied representative on the postgraduate review committee UNSW study abroad and exchange course authority Current teaching assignments: MATH2121: Theory and Applications of Differential Equations MATH2018: Engineering Mathematics 2D Prior courses taught: MATH3041: Mathematical Modeling for Real World Systems MATH6781: Biomathematics

Jun Allardمشاهده پروفایل

استاد

• Mathematical Biology
• Computational Biology
• Cell Mechanics
• +۴ مورد دیگر

Jun Allard is a Professor at the University of California, Irvine, with joint appointments in the Department of Mathematics and Department of Physics and Astronomy. He is affiliated with the Center for Complex Biological Systems and the NSF-Simons Center for Multiscale Cell Fate Research. Education includes: Ph.D. Applied Mathematics, University of British Columbia (2011) M.Sc. Physics, Dalhousie University (2007) B.Sc. Mathematical Physics, Queen's University (2005) His research specializes in mathematical and computational modeling of cellular and biomolecular mechanics. Key interests include how cells utilize force, space, and time to solve problems, with applications in immune cell signaling, cytoskeletal dynamics, and intracellular transport. His work combines theoretical models with experimental collaborations to uncover fundamental biological mechanisms. Recent publications (2021-2025) predominantly focus on computational approaches to cellular processes, including molecular transport mechanisms, immune receptor dynamics, and cytoskeletal organization. These studies employ advanced stochastic modeling, biophysical simulations, and quantitative experimental methods to reveal principles governing cellular behavior. Scientific awards include: UCI Chancellor's Award for Distinguished Fostering of Undergraduate Research (2015) Emerging Diversity Scholar, National Center for Institutional Diversity (2016) Honorable Mention, NSF Graduate Research Fellowship (2012) He has advised over 12 doctoral students and leads the Allard Lab, which develops computational models for cell mechanics. Major grants include NSF awards for research on molecular-tether reactions (DMS-2052668), nanoparticle adhesion (CBET-1929565), and multiscale cell fate (DMS-1763272). The lab collaborates internationally with experimental groups and participates in interdisciplinary initiatives including the Chemical and Materials Physics program.

Mārtiņš Vaivadsمشاهده پروفایل

استادیار

• Cleft Lip and Palate
• Craniofacial Anomalies
• Molecular Genetics
• +۷ مورد دیگر

Mārtiņš Vaivads is an Assistant Professor at the Department of Morphology, Institute of Anatomy and Anthropology, Faculty of Medicine, Riga Stradins University. He also serves as Deputy Vice-Dean for International Students, reflecting his administrative engagement alongside academic responsibilities. His research centers on craniofacial development and anomalies, particularly non-syndromic cleft lip and palate. He investigates the molecular and genetic underpinnings of these conditions, focusing on homeobox genes, signaling pathways (SHH, WNT), and tissue-level changes involving inflammation, immunomodulation, and regeneration. His work contributes to the UN Sustainable Development Goal 3 (Good Health and Well-being) through fundamental medical research. The recent publications (2017–2025) highlight a consistent focus on immunohistochemical analysis of candidate genes and proteins in cleft-affected tissues. Key themes include the expression of BARX1, DLX4, FOXE1, HOXB3, MSX2, SOX3, PAX7, SHH, and WNT proteins, as well as factors involved in tissue protection and regeneration such as HSP60 and BMP2. His work bridges developmental biology, molecular genetics, and clinical anatomy. He leads a PhD-level research project titled 'Investigation of genes and gene proteins in cleft affected tissue' and actively participates in broader institutional research on craniofacial anomalies. He regularly presents findings at conferences, including oral and poster presentations, and engages in peer review for journals like Tissue and Cell . Latvian Council of Science Expert, Field of Science 3.1 Basic Medicine (2024–2027) He advises doctoral candidates and collaborates with researchers such as Professor Maija Pilmane and Professor Ingrida Akota. His research is supported by RSU internal grants and PhD project funding. He is part of a collaborative network studying tissue remodeling and inflammation in craniofacial anomalies, contributing to a multidisciplinary team that includes experts in histology, immunology, and maxillofacial surgery.

Wendell Limمشاهده پروفایل

استاد

• Synthetic Biology
• Cellular Engineering
• Immunoengineering
• +۷ مورد دیگر

Wendell Lim is a Professor in the Department of Cellular and Molecular Pharmacology at the University of California, San Francisco (UCSF), School of Medicine. He is a leading figure in synthetic biology and cellular engineering, directing the Lim Lab, which focuses on reprogramming immune cells for precision cancer immunotherapies. His research integrates synthetic biology, immunology, and systems biology to design novel cell-based therapeutics. University: University of California San Francisco School: School of Medicine Department: Department of Cellular and Molecular Pharmacology Academic Rank: Professor Email: wendell.lim@ucsf.edu Dr. Lim's research interests center on synthetic biology, T cell engineering, cell signaling, and programmable cell therapies. His lab pioneers technologies such as synNotch and CAR-T systems that enable precise control over immune cell behavior, allowing for spatial and temporal regulation of therapeutic activity. His work aims to overcome challenges in cancer heterogeneity, specificity, and persistence. The recent publications of Dr. Lim reflect a strong trend toward engineering smart cell therapeutics, particularly through modular receptor systems, synthetic cytokine circuits, and logic-gated T cells. These works span disciplines including immunology, cancer biology, protein engineering, and regenerative medicine, emphasizing the development of next-generation, conditionally activated immunotherapies with enhanced safety and efficacy. Dr. Lim has received widespread recognition for his contributions to synthetic biology and immunoengineering. His work is frequently published in top-tier journals such as Science , Nature , and Cell , and he is a sought-after speaker and collaborator in the field. He mentors a large group of students, postdoctoral researchers, and collaborators, many of whom are co-authors on his publications. His lab has secured significant funding to support research in engineered cell therapies, synthetic signaling circuits, and translational applications in oncology and autoimmunity. The Lim Lab also develops educational tools and frameworks for teaching synthetic biology concepts. Dr. Lim leads interdisciplinary teams working on synthetic morphogen systems, degron-based control mechanisms, and multicellular patterning, aiming to build foundational platforms for programmable tissues and intelligent cell-based medicines.

Jonathan Eggenschwilerمشاهده پروفایل

دانشیار

• Developmental Biology
• Genetics
• Hedgehog Signaling Pathway
• +۳ مورد دیگر

Jonathan Eggenschwiler is an Associate Professor in the Department of Genetics at the University of Georgia (UGA), affiliated with the UGA Developmental Biology Alliance. His research focuses on molecular mechanisms governing tissue patterning during mammalian embryonic development, particularly through Hedgehog and Nodal signaling pathways. B.A., Biology, University of California, Santa Cruz (1988) Ph.D., Genetics and Development, Columbia University (1998) Postdoctoral Research, Sloan-Kettering Institute (2003) Using mouse models, his lab investigates how Hedgehog signaling controls cell fate specification in the central nervous system and explores Nodal signaling in left-right axis patterning. Current NIH/NICHD grants support studies on Hedgehog transcriptional responses linked to the cell cycle and TGF-beta regulation by Rab23 and Megf8. He also co-leads an NSF-funded project to develop genome-editing tools in Anolis lizards. His scientific contributions are highlighted by awards such as the March of Dimes Basil O’Connor Starter Scholar Award and his role on editorial advisory boards for journals like Cilia and Development. He teaches courses including GENE4310 (Genetic Approaches to Developmental Neuroscience) and mentors graduate students.

• Developmental Biology
• Systems Biology
• Computational Biology
• +۷ مورد دیگر

Luciano Marcon is a Researcher at the Andalusian Center for Developmental Biology (CABD) under Pablo de Olavide University. He earned his PhD in Developmental Biology from Pompeu Fabra University, focusing on Turing mechanisms in digit patterning under Dr. James Sharpe. Education: PhD in Developmental Biology (2013), Pompeu Fabra University His research spans Developmental Biology , Systems Biology , and Computational Modeling , with a focus on Turing networks, somitogenesis, and embryoid self-organization. Recent work includes studies on scale-invariant patterning, Nodal signaling feedbacks, and 4D stem cell dynamics. Analysis of his 15 most recent publications reveals trends in Turing pattern formation , embryonic self-organization , and gene regulatory networks , often integrating mathematical modeling with experimental data from embryoids and stem cell systems.

• Developmental Biology
• Evolutionary Biology
• Gene Expression Regulation
• +۳ مورد دیگر

Claudia Mieko Mizutani is an Associate Professor in the Department of Biology at Case Western Reserve University. Her research focuses on understanding how gene expression patterns evolve to produce diverse tissues and life forms, using Drosophila melanogaster as a model organism. She combines genetic engineering, imaging, and computational modeling to investigate embryonic dorsal-ventral axis patterning and its evolutionary modifications. Research Interests: Investigating gene network evolution in conserved developmental systems Analyzing BMP signaling mechanisms in neuroectoderm patterning Comparing dorsal-ventral axis development across Drosophila species Quantifying transcriptional response dynamics Studying developmental time variation and scaling Exploring hybrid infertility through Evo-Devo perspectives Her laboratory has produced significant publications in fields spanning developmental biology, evolutionary genetics, and computational modeling. Notable contributions include work on morphogen gradient formation and the interaction between embryo morphology and signaling pathways. Scientific Awards: Selected cover feature for 2011 Developmental Biology publication Faculty of 1000 'Must Read' recommendation for 2006 PLoS Biology paper Dr. Mizutani's research integrates experimental and computational approaches to uncover fundamental mechanisms of developmental evolution while maintaining core functionality in biological systems.

• Epigenetics
• Chromatin Biology
• Developmental Biology
• +۴ مورد دیگر

Nathalie Dostatni is a Professor at Sorbonne University and Research Team Leader at the Curie Institute, affiliated with the Core Dynamics (UMR3664) research unit. She has held senior research positions since 2012, focusing on epigenetic mechanisms that govern cell identity during embryonic development and their implications in cancer biology. Epigenetic plasticity and polarity of the embryo Chromatin dynamics in development Transcriptional regulation by morphogen gradients Genome integrity in germ stem cells Her recent work combines interdisciplinary approaches (genetics, biophysics, and quantitative imaging) to dissect the role of chromatin assembly factors like CAF-1 in heterochromatin formation and the transcriptional precision of morphogens like Bicoid in Drosophila embryos. Publications highlight her contributions to understanding stochastic transcriptional dynamics, sharp gene expression borders, and chromatin-mediated genome stability. Collaborations include biophysicists (M. Coppey at Institut Curie/UMR168, C. Fradin at McMaster University) and theoreticians (A. Walczak at ENS, Paris). Her lab investigates chromatin dynamics in two key contexts: (1) CAF-1's role in meiotic cells and germ stem cells, and (2) Bicoid morphogen gradient interpretation in transcriptional precision. The team utilizes Drosophila as a model organism for genetic and imaging studies.

• Molecular Genetics
• Plant Development
• Genetics
• +۳ مورد دیگر

Pablo D Jenik is a Professor of Biology whose research focuses on plant embryogenesis, particularly in the model organism Arabidopsis thaliana . His work investigates the molecular mechanisms controlling embryonic patterning and seed maturation, making significant contributions to plant developmental biology through genetic and molecular approaches. His educational background includes: Ph.D. in Molecular, Cellular and Developmental Biology, Yale University, 2000 Licenciado (B.Sc./M.Sc.) in Biology, University of Buenos Aires, Argentina, 1994 Jenik's research program centers on understanding plant embryo formation with emphasis on two critical phases: patterning (spatial specification of cell types) and maturation (accumulation of reserves for germination). Early work characterized mutants affecting embryonic patterning, studying genes involved in microRNA synthesis (e.g., DICER-LIKE1) and protein degradation pathways (e.g., proteasome subunits). Recent research investigates genetic and physiological triggers initiating the seed maturation program, utilizing Arabidopsis for its stereotyped development that facilitates mutant analysis. Analysis of his publication record reveals a clear evolution from embryonic patterning to maturation processes. His work consistently integrates genetic, molecular, and physiological methodologies with strong undergraduate involvement. Key recurring themes include transcriptional regulation by trihelix factors, microRNA-mediated control, proteasome function, and the coordination of developmental timing—providing fundamental insights into plant reproduction with potential agricultural applications. Jenik has secured significant external funding including an NIH-NIGMS grant (1R15GM113186-01, 2015-2019) for characterizing maturation repressors and an NSF Major Research Instrumentation grant (DBI1626073, 2016-2018) for a confocal microscope. His mentorship of undergraduate researchers is evident through frequent student co-authorships. He teaches core courses including Genetics (BIO 305), Advanced Genetics and Epigenetics (BIO 352), and Evolutionary Developmental Biology (BIO 331), emphasizing research integration in the classroom. Operating within a research-intensive liberal arts college environment, Jenik's laboratory fosters close faculty-student collaboration. Current research directions include expanding embryo maturation studies to related plant species and investigating physiological signals coordinating maturation with developmental progression.