Gabriel Birzu is an Assistant Professor in the Department of Physics at the University of Florida. He develops quantitative models of microbial ecology and evolution using statistical physics approaches. His research investigates fine-scale diversity in microbial communities, examining how spatial processes shape evolutionary trajectories. Recent work analyzes hybridization barriers in cyanobacteria and genealogical patterns during range expansions. Birzu's interdisciplinary approach combines theory, computation, and data analysis to understand microbial diversification mechanisms and community responses to environmental perturbations.
Paul O'Toole is a Professor of Microbial Genomics and Principal Investigator at the APC Microbiome Ireland, University College Cork. His research focuses on the gut microbiome's role in health, aging, and disease, particularly in the context of diet and probiotics. He leads projects like the ELDERMET study on elderly nutrition and the NU-AGE project exploring Mediterranean diets' anti-aging effects. He holds a BA (Mod.) from Trinity College Dublin and a PhD from Lund University, with postdoctoral training in Canada and New Zealand. Key grants include studies on dairy-derived microbiota, probiotic strain improvement, and microbiome analysis in aging populations. He has published extensively on Lactobacillus genomics, gut-brain interactions, and microbiome-driven health outcomes. His work bridges fundamental microbiology with clinical applications, emphasizing translational research. Scientific highlights include discovering microbiome links to cognitive decline, demonstrating dietary modulation of gut microbes to combat obesity, and identifying keystone species in healthy aging. He advocates for sustainability in conservation and food systems, reflecting his interdisciplinary approach to global health challenges.
Corrie Moreau is the Martha N. & John C. Moser Professor of Arthropod Biosystematics and Biodiversity at Cornell University, serving as Director & Curator of the Cornell University Insect Collection. She holds affiliations with the Department of Ecology and Evolutionary Biology and the College of Arts and Sciences. Her research focuses on symbiotic factors driving speciation, adaptation, and diversification in insects, particularly ants. Moreau’s work integrates molecular methods, next-generation sequencing, and field-based research to study biodiversity across scales. Education: Ph.D. in Organismic and Evolutionary Biology from Harvard University (2007), M.Sc. in Biology from San Francisco State University/California Academy of Sciences (2003), B.S. in Biology from San Francisco State University (2000). Research Interests: Evolutionary patterns/processes, organismal biology, plant-animal interactions, chemical ecology, sustainability, and microbiome dynamics. Her lab (Moreau Lab) investigates ant-microbe symbioses, host-microbe interactions, and the role of symbioses in macroevolutionary processes. Recent work includes studies on ant phylogenetics, gut microbiome evolution, and the impact of invasive species on native ecosystems. Publications highlight her contributions to understanding ant evolution, microbial symbiosis, and biogeography. Grants include NSF-funded projects on ant genomics and symbiosis. She advocates for natural history collections and their role in biodiversity research and education.
Karoline Faust is an Associate Professor at KU Leuven, affiliated with the Laboratory of Molecular Bacteriology (Rega Institute) and the Faculty of Medicine . She contributes to the iSi Health and Leuven One Health institutes, and serves on senior academic councils. Her research spans microbial systems biology, focusing on community dynamics and network analysis. Education: PhD in bioinformatics (2010, KU Leuven) Affiliations: KU Leuven, ISME Journal editorial board, Belgian Society for Microbiology Her research investigates microbial community dynamics , systems biology approaches to microbiomes, and bioinformatics tool development . She specializes in modeling human gut microbiota , synthetic microbial communities , and environmental microbiomes (e.g., microplastic impacts on Daphnia microbiomes). Her work integrates metabolic modeling , network analysis , and experimental systems to understand microbial interactions. Recent publications highlight her contributions to microbial network inference , 16S rRNA sequencing protocols , microfluidics , and ecological modeling of microbiomes. She develops tools like manta , miaSim , and CoNet to analyze community structures. Teaching: Karoline co-teaches courses in microbiology, bioinformatics, and network analysis at KU Leuven, and has contributed to international workshops on microbial network inference. Scientific Engagement: She serves as Senior Editor at ISME Journal and Secretary of the Belgian Society for Microbiology .
Lucas Paoli is a Researcher and Course Instructor at École Polytechnique Fédérale de Lausanne (EPFL), Switzerland. He leads the Paoli Lab (Microbiome Immunity and Ecology) within the Global Health Institute (GHI) under the School of Life Sciences (SV). His roles include scientific collaboration and teaching responsibilities in life sciences engineering. Paoli holds a PhD in Microbiome Research from ETH Zürich (2018-2023), an M.Phil. in Environmental Policy from the University of Cambridge (2017-2018), and an M.Sc. in Ecology and Evolution from École normale supérieure (2015-2017). Research Focus: His work bridges microbial immunity and ecology, investigating how microbes defend against viral infections across ecosystems like oceans and human microbiomes. Techniques include global-scale metagenomics and functional genomics to study immune strategies and ecological interactions. Key themes involve microbial community dynamics, viral defense mechanisms, and the impact of environmental factors on microbial immunity. Lab & Education: The Paoli Lab explores microbiome-immunity interactions with a focus on ecological contexts. Paoli supervises PhD students in Life Sciences Engineering. His research outputs span microbial ecology, metagenomic tool development, and marine microbiome studies. Contact: lucas.paoli@epfl.ch, AAB 1 39, +41 21 693 16 99.
Josh Atkinson is an Assistant Professor in the Department of Civil and Environmental Engineering and the Omenn-Darling Bioengineering Institute at Princeton University. His research focuses on using synthetic biology and protein engineering to control electron transport in microbes for environmental applications, such as bioelectronic sensors and bioremediation. The Atkinson Lab investigates microbial energy processing, biofilm-electronic interfaces, and sustainable biotechnologies. Affiliations: Princeton University, Omenn-Darling Bioengineering Institute Research Interests: Microbial electron transport, bioelectronic systems, environmental monitoring, sustainable catalysis His work bridges disciplines like electrochemistry, bioengineering, and environmental science to engineer living materials for real-world challenges. The lab recruits students across levels, emphasizing diversity and interdisciplinary collaboration. Recent projects include real-time contaminant sensors and light-controlled biofilm patterning. Articles highlight innovations in bioelectronics and microbial systems engineering. The lab’s future directions involve scaling-up bioelectronic devices and enhancing microbial community understanding.
Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .
David Serre is a Professor in the Department of Microbiology and Immunology at the University of Maryland School of Medicine, with an additional appointment at the Institute for Genome Sciences. His research focuses on developing genomic approaches to study eukaryotic pathogens, particularly Plasmodium vivax, the leading cause of malaria outside Africa. His laboratory investigates parasite responses to antimalarial drugs, host immune responses, and mosquito vector biology using genomic and transcriptomic techniques. Education 1997–2000: Engineering degree in Chemistry, École Nationale Supérieure de Chimie, Montpellier, France 2000–2004: PhD in Biology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany 2004–2007: Postdoctoral fellowship, McGill University and Genome Quebec Innovation Centre, Montreal, Canada Research Focus Dr. Serre’s work integrates genomics to study Plasmodium vivax’s drug resistance, relapse mechanisms, and interactions with hosts and vectors. Key areas include: Genomic assays to characterize parasite drug responses Transcriptomic analysis of host immune responses Genomic studies of Anopheles mosquitoes as malaria vectors Recent Trends in Publications Recent work highlights genomic and transcriptomic approaches to dissect Plasmodium vivax biology, including: Single-cell RNA sequencing to resolve transcript isoforms and stage-specific expression Analysis of relapse dynamics and drug resistance mechanisms Microbiome studies in mosquitoes and environmental contexts Grants & Advising No explicit grants or advisee names are listed in the provided text. Collaborators include institutions like the Max Planck Institute, McGill University, and the Institute for Genome Sciences. Labs & Teams His lab is affiliated with the University of Maryland School of Medicine and the Institute for Genome Sciences, focusing on genomic and molecular approaches to infectious diseases.
Dr. Rachel Carmody is the Thomas D. Cabot Associate Professor of Human Evolutionary Biology at Harvard University, affiliated with the Faculty of Arts and Sciences. Her research focuses on energy metabolism, gut microbiome interactions, and their evolutionary implications. She leads the Nutritional & Microbial Ecology Lab, exploring how diet, genetics, and microbial communities influence human energy dynamics. Her work integrates evolutionary biology, physiology, and metagenomics to address questions about human uniqueness in digestion, maternal-offspring energy conflicts, and non-caloric dietary components. Office: Museum of Comparative Zoology 542; Email: carmody@fas.harvard.edu. Key research themes include gut microbiome-modulated obesity, placental hormone roles in pregnancy metabolism, and dietary digestibility frameworks. She also investigates evolutionary shifts in gut microbiota during human industrialization and animal domestication. Her lab employs mouse models, comparative studies, and multiomics approaches to dissect host-microbial interactions. Recent articles highlight microbiome effects on exercise-induced weight changes, antibiotic-induced obesity mechanisms, and cross-cultural dietary comparisons. While no awards are explicitly listed, her prolific publications reflect sustained impact in nutritional and evolutionary microbiology. No student advisees or grants are detailed in the provided text.
Simone Fior is a Lecturer at the Department of Environmental Systems Science , ETH Zürich , focusing on ecological genetics and plant adaptation. Their research integrates genomic, quantitative genetics, and ecological field experiments, particularly on Dianthus (Caryophyllaceae) along altitudinal and climatic gradients. Recent work explores climate-induced range shifts, local adaptation, and genomic responses to environmental changes. Professional experience includes roles at ETH Zürich since 2013 (Senior Assistant, Postdoc) and prior positions at the Edmund Mach Foundation (2009-2012) and University of Insubria (2007-2008). Education spans a PhD in Plant Biology (University of Milan, 2007) and an MSc in Natural Sciences (University of Milan, 2003). Simone co-organizes the Bioinformatics for Adaptation Genomics Winter School . Key research areas include adaptive divergence , polygenic adaptation , climate change biology , and phylogenomics . Articles emphasize genomic selection signatures, functional-structural modeling, and ecological-genetic interactions. Notable collaborations involve Jake Alexander, Alex Widmer, and interdisciplinary teams at ETH Zurich.
Prof. Dr. Anja Meryandini is a Professor in the Department of Biology at IPB University (Bogor Agricultural University), Indonesia. She leads research in microbial biotechnology with a focus on enzyme technology, probiotics, prebiotics, and fermentation processes for food and agricultural applications. Her educational journey includes a Bachelor's degree in Biology from Padjadjaran University, a Master's degree in Biology from IPB University, and a PhD in Microbiology from Albert Ludwig Universitaet, Germany. This strong academic foundation has supported her extensive research career spanning over three decades. Professor Meryandini's research interests encompass: Microbial enzyme technology (protease, mannanase, xylanase) for animal feed processing Development of probiotics and prebiotics for food and animal applications Flour production using microbial technology Fermentation processes for various agricultural products Soil microbiome analysis in relation to land use changes Biodegradation of environmental pollutants Her recent publications reveal a consistent focus on lactic acid bacteria, yeast fermentation, enzyme characterization, and biodegradation processes, often utilizing Indonesian indigenous microorganisms. She has made significant contributions to understanding cocoa fermentation microbiology, tempeh processing, and agricultural waste valorization. Professor Meryandini has been actively involved in important research projects including 'Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia)' which is part of a larger CRC 990 program. Her work demonstrates strong interdisciplinary connections between microbiology, environmental science, and food technology. With over 100 publications documented from 1994 to 2024, Professor Meryandini maintains an active research program with significant contributions to microbial biotechnology in the Indonesian context and beyond.
Dr. Pamela D. Roberts is a Professor of Plant Pathology and State Extension Specialist for Vegetable Pathology at the University of Florida's Southwest Florida Research and Education Center (SWFREC) in Immokalee, FL. She holds a B.Sc. in Horticultural Sciences from Kansas State University, an M.S. in Plant Pathology from the University of Hawaii, and a Ph.D. in Plant Pathology from the University of Florida. Her research focuses on sustainable disease management in vegetables and specialty crops, emphasizing integrated management strategies for bacterial and fungal-like pathogens. She leads the Florida Extension Plant Disease Diagnostic Laboratory at SWFREC, offering diagnostic services and disease management recommendations. Her extension programs include educational outreach on plant diseases and field demonstrations of integrated management techniques. Dr. Roberts has received prestigious awards such as the UF/IFAS Jim App Team Award and the Dallas Townsend Distinguished Extension Award. She serves as Editor-in-Chief of the American Phytopathological Society journal Plant Health Progress . Her work spans disease diagnosis, epidemiology, and pathogen evolution, with a strong emphasis on crops like tomato, pepper, and citrus. Her research publications address topics such as Xanthomonas pathogen diversity, remote sensing for disease detection, and sustainable agricultural practices. She collaborates on projects involving molecular diagnostics, pest management strategies, and crop resilience. Ongoing efforts include combating bacterial spot diseases, whitefly-transmitted viruses, and citrus black spot.
Mads Albertsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. He leads the Albertsen Lab and is a key member of the Center for Microbial Communities. His research focuses on high-throughput DNA sequencing methods to explore uncultivated microbes and populate the tree of life. He is actively involved in major interdisciplinary projects such as NanoEat , Microflora Danica , and DarkScience , funded by the European Research Council, Villum Foundation, and Poul Due Jensen Foundation. His research interests span metagenomics , long-read sequencing , bioinformatics , microbial ecology , and environmental biotechnology . He develops cutting-edge methods to improve throughput in microbial genome recovery and applies them to diverse areas including wastewater treatment, human microbiome studies, and infectious disease diagnostics. His work has significant implications for public health and sustainability. The recent publications highlight a strong trend in long-read sequencing (Oxford Nanopore), metagenome-assembled genomes (MAGs) , and microbial dark matter . His team has published high-impact papers in Nature , Nature Methods , and Nature Communications , with applications in environmental systems and clinical diagnostics, including SARS-CoV-2 and bloodstream infections. His scientific awards include: The Grundfos Prize (2021) The Fritz Kaufmann Prize (2021) The Rising Star Award by IWA & ISME (2016) Research Result of the Year in Denmark (2015) The Spar Nord Fond Research Prize (2015) Mads Albertsen advises numerous PhD students, leads externally funded research projects, and is involved in technology transfer through his co-founding of DNASense ApS (2014–2020). He also serves on scientific advisory boards and contributes to public policy, including as a member of the Danish SARS-CoV-2 variant risk-assessment group. He teaches courses in Data Science, Bioinformatics, Genomics, and Environmental Microbiology at Aalborg University. His lab, the Albertsen Lab , is part of the Center for Microbial Communities , a leading research center focused on microbial systems biology and environmental applications. The lab collaborates extensively with national and international partners in academia, industry, and public health institutions.
Alex Liu is a Researcher at the Department of Earth Sciences within the University of Cambridge. He specializes in palaeobiology , focusing on the origin and early evolution of animals, particularly the Ediacaran biota (~579–539 million years ago), and their co-evolution with Earth's environment. Research Focus: Refines understanding of animal body plan evolution, taphonomy, sedimentology, and macroevolutionary trends. Methodologies: Combines fieldwork, experimental studies, petrology, phylogenetics, and big-data analyses. Collaborations: Works with international museums and research teams on fossil sites in Namibia, Canada, and Brazil. Additional Interests: Explores meiofaunal evolution, paleogeography, paleoclimate, and conservation paleobiology. He supervises Cambridge NERC Doctoral Landscape Awards (DLA) projects and welcomes student contributions to taxonomic, paleoecological, and analytical studies.
Christopher Lawson is an Assistant Professor in the Department of Chemical Engineering and Applied Chemistry at the University of Toronto, affiliated with the Faculty of Applied Science and Engineering. He serves as Principal Investigator of the Microbiome Engineering Lab and is part of BioZone – the Centre for Applied Bioscience and Bioengineering. His research focuses on engineering anaerobic microbiomes for resource recovery from waste streams using systems biology, synthetic biology, and machine learning approaches. B.A.Sc., M.A.Sc. (University of British Columbia) Ph.D. (University of Wisconsin-Madison) Postdoctoral Training (Berkeley Lab) Lawson's work addresses the challenge of controlling complex microbial interactions in engineered systems to enable scalable biotechnologies for renewable energy, chemicals, and materials. His lab develops high-throughput methods integrating automation and computational tools to optimize microbiome assembly and metabolic fluxes. Recent publications highlight advancements in metabolic modeling , isotope tracing , and systems-level analysis of anaerobic microbiomes, with applications in wastewater treatment , anammox granules , and bioenergy production . His research bridges fundamental microbiology with industrial-scale bioprocess engineering. Scientific Awards ISME/IWA BioCluster Rising Star Award (2022) Jacobs Engineering Group/AEESP Outstanding Doctoral Dissertation Award (2020) Wesley Eckenfelder Graduate Research Award (2019) WEF Canham Graduate Studies Scholarship (2018) NSERC Post-Graduate Scholarship – Doctoral (2014) Lawson actively mentors students and postdocs, emphasizing technical rigor, communication skills, and independence. His lab collaborates within BioZone and with industry partners to advance "team science" principles. Current projects focus on creating engineered microbiomes for commercial-scale waste valorization.
