Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .
Josh Atkinson is an Assistant Professor in the Department of Civil and Environmental Engineering and the Omenn-Darling Bioengineering Institute at Princeton University. His research focuses on using synthetic biology and protein engineering to control electron transport in microbes for environmental applications, such as bioelectronic sensors and bioremediation. The Atkinson Lab investigates microbial energy processing, biofilm-electronic interfaces, and sustainable biotechnologies. Affiliations: Princeton University, Omenn-Darling Bioengineering Institute Research Interests: Microbial electron transport, bioelectronic systems, environmental monitoring, sustainable catalysis His work bridges disciplines like electrochemistry, bioengineering, and environmental science to engineer living materials for real-world challenges. The lab recruits students across levels, emphasizing diversity and interdisciplinary collaboration. Recent projects include real-time contaminant sensors and light-controlled biofilm patterning. Articles highlight innovations in bioelectronics and microbial systems engineering. The lab’s future directions involve scaling-up bioelectronic devices and enhancing microbial community understanding.
Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.
Simone Fior is a Lecturer at the Department of Environmental Systems Science , ETH Zürich , focusing on ecological genetics and plant adaptation. Their research integrates genomic, quantitative genetics, and ecological field experiments, particularly on Dianthus (Caryophyllaceae) along altitudinal and climatic gradients. Recent work explores climate-induced range shifts, local adaptation, and genomic responses to environmental changes. Professional experience includes roles at ETH Zürich since 2013 (Senior Assistant, Postdoc) and prior positions at the Edmund Mach Foundation (2009-2012) and University of Insubria (2007-2008). Education spans a PhD in Plant Biology (University of Milan, 2007) and an MSc in Natural Sciences (University of Milan, 2003). Simone co-organizes the Bioinformatics for Adaptation Genomics Winter School . Key research areas include adaptive divergence , polygenic adaptation , climate change biology , and phylogenomics . Articles emphasize genomic selection signatures, functional-structural modeling, and ecological-genetic interactions. Notable collaborations involve Jake Alexander, Alex Widmer, and interdisciplinary teams at ETH Zurich.
Dr. Rachel Carmody is the Thomas D. Cabot Associate Professor of Human Evolutionary Biology at Harvard University, affiliated with the Faculty of Arts and Sciences. Her research focuses on energy metabolism, gut microbiome interactions, and their evolutionary implications. She leads the Nutritional & Microbial Ecology Lab, exploring how diet, genetics, and microbial communities influence human energy dynamics. Her work integrates evolutionary biology, physiology, and metagenomics to address questions about human uniqueness in digestion, maternal-offspring energy conflicts, and non-caloric dietary components. Office: Museum of Comparative Zoology 542; Email: carmody@fas.harvard.edu. Key research themes include gut microbiome-modulated obesity, placental hormone roles in pregnancy metabolism, and dietary digestibility frameworks. She also investigates evolutionary shifts in gut microbiota during human industrialization and animal domestication. Her lab employs mouse models, comparative studies, and multiomics approaches to dissect host-microbial interactions. Recent articles highlight microbiome effects on exercise-induced weight changes, antibiotic-induced obesity mechanisms, and cross-cultural dietary comparisons. While no awards are explicitly listed, her prolific publications reflect sustained impact in nutritional and evolutionary microbiology. No student advisees or grants are detailed in the provided text.
David Serre is a Professor in the Department of Microbiology and Immunology at the University of Maryland School of Medicine, with an additional appointment at the Institute for Genome Sciences. His research focuses on developing genomic approaches to study eukaryotic pathogens, particularly Plasmodium vivax, the leading cause of malaria outside Africa. His laboratory investigates parasite responses to antimalarial drugs, host immune responses, and mosquito vector biology using genomic and transcriptomic techniques. Education 1997–2000: Engineering degree in Chemistry, École Nationale Supérieure de Chimie, Montpellier, France 2000–2004: PhD in Biology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany 2004–2007: Postdoctoral fellowship, McGill University and Genome Quebec Innovation Centre, Montreal, Canada Research Focus Dr. Serre’s work integrates genomics to study Plasmodium vivax’s drug resistance, relapse mechanisms, and interactions with hosts and vectors. Key areas include: Genomic assays to characterize parasite drug responses Transcriptomic analysis of host immune responses Genomic studies of Anopheles mosquitoes as malaria vectors Recent Trends in Publications Recent work highlights genomic and transcriptomic approaches to dissect Plasmodium vivax biology, including: Single-cell RNA sequencing to resolve transcript isoforms and stage-specific expression Analysis of relapse dynamics and drug resistance mechanisms Microbiome studies in mosquitoes and environmental contexts Grants & Advising No explicit grants or advisee names are listed in the provided text. Collaborators include institutions like the Max Planck Institute, McGill University, and the Institute for Genome Sciences. Labs & Teams His lab is affiliated with the University of Maryland School of Medicine and the Institute for Genome Sciences, focusing on genomic and molecular approaches to infectious diseases.
Dr. Pamela D. Roberts is a Professor of Plant Pathology and State Extension Specialist for Vegetable Pathology at the University of Florida's Southwest Florida Research and Education Center (SWFREC) in Immokalee, FL. She holds a B.Sc. in Horticultural Sciences from Kansas State University, an M.S. in Plant Pathology from the University of Hawaii, and a Ph.D. in Plant Pathology from the University of Florida. Her research focuses on sustainable disease management in vegetables and specialty crops, emphasizing integrated management strategies for bacterial and fungal-like pathogens. She leads the Florida Extension Plant Disease Diagnostic Laboratory at SWFREC, offering diagnostic services and disease management recommendations. Her extension programs include educational outreach on plant diseases and field demonstrations of integrated management techniques. Dr. Roberts has received prestigious awards such as the UF/IFAS Jim App Team Award and the Dallas Townsend Distinguished Extension Award. She serves as Editor-in-Chief of the American Phytopathological Society journal Plant Health Progress . Her work spans disease diagnosis, epidemiology, and pathogen evolution, with a strong emphasis on crops like tomato, pepper, and citrus. Her research publications address topics such as Xanthomonas pathogen diversity, remote sensing for disease detection, and sustainable agricultural practices. She collaborates on projects involving molecular diagnostics, pest management strategies, and crop resilience. Ongoing efforts include combating bacterial spot diseases, whitefly-transmitted viruses, and citrus black spot.
Yousif Shamoo is the Ralph and Dorothy Looney Professor of BioSciences at Rice University, where he has been a faculty member since 1998. He previously served as Vice Provost for Research (2014-2022) and Director of the Institute of Biosciences and Bioengineering (2008-2014). He holds a Ph.D. in Molecular Biophysics and Biochemistry from Yale University (1988). His research focuses on combating multi-drug resistant bacteria through experimental evolution and biophysical approaches. Key interests include: Evolutionary trajectories of antibiotic resistance in pathogens like Enterococcus and Acinetobacter Biochemical basis of adaptation using microfluidics, genomics, and structural biology Discovery of novel antimicrobial strategies targeting cell membrane stress pathways Microbial interactions in spatially structured environments Publications emphasize antimicrobial resistance mechanisms, evolutionary biophysics, and microfluidic technology development. Recent work explores daptomycin resistance pathways ( LiaFSR ), membrane lipid signaling, and high-throughput evolution platforms. Awards & Honors: AAAS Fellow (2024) Ralph and Dorothy Looney Professorship (2020) George R. Brown Award for Excellence in Teaching (2015) George R. Brown Superior Teaching Award (4×, 2009 onward) ASM Distinguished Lecturer (2011-2013) He leads an active research group funded by NIH and DoD, advising 15+ graduate students. Current projects integrate synthetic biology with Streptomyces-derived drug discovery and microfluidic biosurveillance platforms.
Rahul Sarpeshkar is a Professor of Engineering, Microbiology & Immunology, Physics, and Molecular & Systems Biology at Dartmouth College, holding the Thomas E. Kurtz Professorship and chairing the Neukom Computational Science Cluster. His research bridges analog circuits with quantum physics, synthetic biology, and ultra-low-power systems. BS in Electrical Engineering and Physics from MIT (1995) PhD in Computation and Neural Systems from Caltech (1998) His research focuses on analog synthetic biology , quantum circuit design , and bio-inspired supercomputing , emphasizing noise, thermodynamics, and energy efficiency. He develops cytomorphic chips to model biochemical networks and quantum-inspired circuits for spectrum analysis. Recent work integrates quantum and classical computation for biological simulations, drug cocktail formulation , and ATP energy measurement in living cells. Patents highlight innovations in quantum emulation and medical devices. Scientific awards include: Fellow, National Academy of Inventors (2018) IEEE Fellow (2018) NSF CAREER Award ONR Young Investigator Award Packard Fellow Award Junior Bose Teaching Award, MIT He leads a wet lab for synthetic microbial circuit implementation and a dry lab for quantum and nanoelectronics, mentoring a multidisciplinary team of physicists, bioengineers, and computer scientists.
Philip Poole is a Professor of Plant Microbiology at the University of Oxford's Department of Plant Sciences and Senior Research Fellow at Somerville College. His research focuses on plant-microbe interactions, nitrogen fixation, and rhizosphere microbiology. He has led major international projects including the BBSRC-NSF Synthetic Symbioses program (2014-2019) and the India-UK Nitrogen Fixation Consortium (2016-2019). With 26 grants as PI from the UK's BBSRC, he has secured over £10.5 million in funding. His work includes pioneering bacterial Lux biosensors for metabolite analysis, transcriptomics under sterile conditions, and metatranscriptomics in soil to study microbiome-plant interactions. Current projects model nitrogen fixation biochemistry in legume nodules and investigate rhizobia lifecycle transitions from rhizosphere colonization to symbiotic bacteroid differentiation. He co-directs the Oxford Centre for Plants for the 21st Century and serves on editorial/advisory boards for Microbiology UK, The Journal of Bacteriology, and Pivot Bio. His contributions include elucidating the ammonia-alanine pathway for nitrogen secretion and demonstrating symbiotic auxotrophy dependencies in bacteroids. Key achievements include developing global mutagenesis strategies (INSeq) and advancing understanding of microbial community structures in the rhizosphere. His research integrates molecular, genetic, and systems biology approaches to address global challenges in sustainable agriculture.
Eileen A. Lacey is the Class of 1933 Chair in Biological Sciences and Professor in the Department of Integrative Biology at UC Berkeley. She leads the Lacey Lab based at the Museum of Vertebrate Zoology, focusing on vertebrate social behavior and population biology. Her research emphasizes evolutionary causes and consequences of social behavior in mammals, particularly subterranean rodents from Argentina and Chile. She combines field studies with genetic analyses to explore ecological drivers of sociality and genetic impacts of social living. Educational background: Not explicitly stated in text but inferred as PhD in Zoology/Behavioral Ecology from a top-tier university. Current lab members include PhD students Shannon O'Brien, Kwasi Wrensford, Erin Person, and Daisy Horr. Recent projects involve neuroendocrine mechanisms of dispersal in tuco-tucos and gut microbiome studies in social rodents. Research interests include evolutionary social behavior, behavioral ecology, molecular genetics, and conservation genetics. She maintains a captive colony of colonial tuco-tucos and collaborates with the MVZ's Evolutionary Genetics Laboratory. The lab actively promotes diversity and inclusion in STEM through anti-racist initiatives and educational outreach programs. Scientific achievements include groundbreaking work on MHC diversity in social rodents and ecological drivers of group living. Recent recognition includes NSF postdoctoral fellowships for lab members and awards like the Ford Foundation Dissertation Fellowship. The lab's work has been featured in journals like Behavioral Ecology & Sociobiology , Hormones and Behavior , and Journal of Mammalogy . Lab operations emphasize fieldwork in Argentina, California, and other global sites with captive colony studies. Future projects include investigating reproductive isolation mechanisms in California voles and the mechanistic underpinnings of social behavior in hyenas and ground squirrels.
Berat Z. Haznedaroğlu is an Assistant Professor at the Institute of Environmental Sciences, Bogazici University, Istanbul, where he has been serving since 2014. He previously held an Assistant Professor position at the Department of Civil, Structural, and Environmental Engineering, University at Buffalo, New York (2012–2014), and completed postdoctoral training at Yale University. His research is highly interdisciplinary, bridging environmental engineering, microbiology, and biotechnology. Education: Postdoctoral, Chemical and Environmental Engineering, Yale University, USA (2012) PhD, Chemical and Environmental Engineering, University of California-Riverside, USA (2010) MS, Civil and Environmental Engineering, Villanova University, USA (2005) BS, Biology, Middle East Technical University, Turkey (2003) His research interests include Environmental Microbiology , Microalgae Functional Genomics , Systems Biology , and the Fate and Transport of Pathogens . He is particularly known for his work on microalgae-based solutions for wastewater treatment, biofuel production, and space life support systems. His lab explores the integration of algae-bacteria consortia for sustainable biorefineries and environmental remediation. The recent publications reflect a strong trend toward applied environmental biotechnology, with emphasis on microalgae applications in wastewater treatment, high-value product recovery (e.g., phycocyanin), and thermal processing effects on algal nutritional quality. The work spans from fundamental metabolic pathway analysis to real-world implementation in biorefineries and space missions. Scientific Awards and Grants: INDEPENDENT Project (€6.9M, 2019–2024) – Integrated Biorefinery for Bioeconomy MICRO-JET Project ($448K, 2020–2023) – Algae-Based Bio-Jet Fuel VirALGin Project ($185K, 2022–2024) – Algae-Derived SARS-CoV-2 Inhibitors UzMAn Project ($65K, 2023–2024) – Microalgal Life Support for Space Renew-IST Project ($521K, 2022–2023) – Renewable Energy Center in Istanbul Dr. Haznedaroglu leads a dynamic research group with multiple funded projects and collaborative networks across institutions in Turkey and the U.S. He advises graduate students and has co-authored several book chapters and journal articles with junior researchers. His work is supported by major national and international funding bodies including TUBITAK, TUBITAK-Uzay, and the Ministry of Industry and Technology. Future research directions include closed-loop life support systems for space habitats and commercial-scale algal biorefineries. Laboratories and Research Platforms: His team operates within the CBE Institute at Bogazici University, utilizing facilities for microbial culturing, genomics, and environmental analysis. The INDEPENDENT and UzMAn projects involve advanced bioreactor systems and space-simulated environments.
Haagen Klaus is a Professor in the Department of Anthropology at George Mason University, specializing in bioarchaeology, paleopathology, and forensic anthropology. Since 2013, he has directed research on the north coast of Peru, focusing on human skeletal biology, mortuary practices, and the impacts of colonialism and environmental stressors on prehistoric and historic societies. Ph.D., Department of Anthropology, The Ohio State University (2008) M.A., Department of Anthropology, Southern Illinois University (2003) B.A., Department of Anthropology, State University of New York at Plattsburgh (2000) Klaus's research explores biocultural transformations in complex societies, with emphasis on health, violence, identity, and ethnogenesis. His Lambayeque Valley Biohistory Project (founded 2003) investigates skeletal markers of disease, stress, and violence across 10,000 years of Andean history. Methodologies include isotopic chemistry, ancient DNA analysis, and dental phenetics. Recent work (2025) examines oral microbiomes during Spanish colonization, syndemic processes in colonial dynamics, and stress indicators in pre- and postcontact populations. Projects integrate osteoimmunology, ecoimmunology, and life history trade-offs to understand physiological and cultural resilience. Current graduate students under his supervision include Rae-Ocean Blake, Kimberly Hargrave, Megan Jankowski, Emily Schopmeyer, and Celeste Schultheiss. He leads international collaborations involving Peruvian, Japanese, Canadian, and American researchers through the Lambayeque Valley Biohistory Project.
Jan Dijkstra is an Associate Professor at Wageningen University specializing in Animal Nutrition . His research focuses on dairy cattle nutrition, methane emissions, and nutrient efficiency. Academic Rank: Associate Professor Department: Animal Nutrition His work emphasizes: Mathematical modelling of methane production Phosphorus and nitrogen balance optimization Feed supplementation strategies for reduced emissions Genotype-environment interactions in dairy systems Recent publications highlight advancements in methane mitigation , nutrient cycling , and rumen microbiome dynamics . He serves as a promotor for multiple PhD projects and contributes to datasets on equine microbiomes and rumen metabolites. Scientific Awards American Feed Industry Association Award (2015) Publicatieprijs ASG (2013) Supervision PhD candidates: Kozorezov, Henry, Koning, Vivares Martinez EngD candidate: Holshof
Eduardo Rocha is a Professor and Head of the Microbial Evolutionary Genomics laboratory at the Institut Pasteur, within the Department of Genomes and Genetics. His research integrates bioinformatics, molecular evolution, and genomics to understand bacterial genome organization and dynamics, particularly focusing on mobile genetic elements and their role in adaptation and antibiotic resistance. His research interests include microbial evolutionary genomics, genome organization, horizontal gene transfer, mobile genetic elements (plasmids, phages, integrons), bacterial pathogen evolution, and computational biology. His work lies at the intersection of molecular evolution, population genetics, and molecular epidemiology, with strong translational implications for understanding antimicrobial resistance and infectious disease emergence. The recent publications highlight a consistent focus on mobile genetic elements, genome plasticity, and bacterial adaptation. Key themes include the role of integrons and CRISPR-Cas systems in bacterial immunity, plasmid-mediated spread of antibiotic resistance, phage-plasmid interactions, and the development of bioinformatics tools for microbial genomics. These works frequently appear in high-impact journals such as Science , Nature Microbiology , and PLoS Biology , reflecting significant contributions to the field. Eduardo Rocha leads multiple funded research projects, including ERC-2011-StG EVOMOBILOME, ANR Magisbac, and ANR SHAPE. He has developed and maintains several widely used bioinformatics software tools: IntegronFinder, MacSyFinder, PanACoTA, SatelliteFinder, CapsuleFinder, TXSScan, and others. He mentors a large team of PhD students, postdoctoral researchers, and engineers, and has supervised numerous former students who now hold independent research positions worldwide. Eduardo Rocha has received research funding from major agencies including the European Research Council (ERC) and the French National Research Agency (ANR). His work is central to the LabEx IBEID and the INCEPTION convergence program, where he serves on the steering committee, promoting interdisciplinary research in infectious disease emergence. His laboratory, part of the Genomes and Genetics department, actively contributes to microbial evolutionary genomics through both methodological development and biological discovery. The team participates in networks such as Phages.fr, GDR BIM, and GDR AIEM, reinforcing its collaborative and integrative approach.
