Tim Q. Duong, Ph.D., is a Professor at Albert Einstein College of Medicine, affiliated with the Departments of Radiology, Biochemistry, Ophthalmology & Visual Sciences, and Neuroscience. His research focuses on medical imaging, MRI, image analysis, machine learning, and predictive modeling for studying diseases like COVID-19 , neurodegeneration (Alzheimer's, multiple sclerosis), brain injuries , and breast cancer . Develops AI-driven MRI techniques for early disease detection Investigates neuroplasticity in glaucoma and diabetic retinopathy Leads grants from NIH and National Eye Institute Research Trends : Recent publications emphasize AI integration in medical imaging, long-term effects of SARS-CoV-2, and advanced MRI applications for ocular and neurological disorders. Grants include multiple R01 awards for diabetic retinopathy and glaucoma studies. Training Opportunities : Actively recruits postdocs, research coordinators, and faculty. Offers research positions for graduate, medical, and high school students, including Regeneron Scholar programs. Labs & Teams : Leads the Duong Lab at Montefiore Medical Center, focusing on translational research for clinical imaging solutions.
Zhe Ji is an Assistant Professor in the Department of Biomedical Engineering at McCormick School of Engineering and the Department of Pharmacology at Feinberg School of Medicine, Northwestern University. His research integrates computational and experimental genomics to study gene transcription and RNA translation in cell fate commitment and oncogenic processes, aiming to develop precision medicine strategies. **Education**: Postdoctoral Fellow in Cancer Systems Biology, Harvard Medical School Postdoctoral Fellow in Computational Biology, Broad Institute of MIT and Harvard Ph.D. in Computational Genomics, Rutgers University B.S. in Biotechnology, Nanjing University, China **Research Focus**: Keywords include Data Science, Computational Biology, Functional Genomics, RNA, Cancer, Inflammation, and Machine Learning. The lab explores regulatory mechanisms underlying disease, with a focus on translational control, cancer metastasis, and inflammatory networks. **Grants & Advising**: No specific grants or student advisees listed. The lab emphasizes collaborative projects and computational-experimental approaches. **Lab Affiliations**: Zhe Ji’s lab is part of Northwestern’s interdisciplinary environment, bridging engineering and medicine to advance genomic technologies and therapeutic strategies.
Rebecca Willett is a Professor of Statistics and Computer Science at the University of Chicago and Faculty Director of AI at the Data Science Institute. She holds the Worah Family Professorship and is a member of the Wallman Society of Fellows. Her research focuses on machine learning, signal processing, and scientific computing, with applications in astronomy, climate science, and biochemistry. She has held visiting roles at institutions including UCLA and INRIA. Key roles include Deputy Directorships at the NSF-Simons Institute for Theory and Mathematics in Biology and the SkAI Institute. Education: PhD in Electrical and Computer Engineering from Rice University (2005), followed by faculty roles at Duke University (2005–2013) and the University of Wisconsin-Madison (2013–2018). Awards include the 2024 SIAM Data Science Career Award, NSF CAREER Award (2007), and AFOSR Young Investigator Award (2010). Research interests span inverse problems, optimization theory, and interdisciplinary applications. Her work bridges high-dimensional statistics and imaging science. Recent articles emphasize neural network theory, climate data assimilation, and biophysical modeling. Awards include SIAM Fellowship, IEEE Fellowship, and teaching excellence awards. She leads initiatives in AI ethics, broadening participation in STEM, and serves on key committees like the National Academies' CATS. Labs/Groups: Machine Learning Group at UChicago, CERES Center for Unstoppable Computing. Grants include NSF, DOE, and collaborations with Argonne National Laboratory.
Michael Groll serves as Professor and Chair of Biochemistry at the Technical University of Munich (TUM), where he leads structural biology and enzymology research with a focus on proteasome mechanisms and inhibitor development. His laboratory, located at the Ernst-Otto-Fischer-Str. 8 campus in Garching, maintains active collaborations in drug discovery for cancer and infectious diseases. His primary research domains include proteasome inhibition, enzyme catalysis, and natural product biosynthesis, employing X-ray crystallography, biochemical assays, and bioengineering to dissect molecular mechanisms. Recent work emphasizes AI-guided enzyme optimization, bacterial stress response targeting, and structural characterization of halogenation enzymes, reflecting interdisciplinary approaches bridging chemistry and biology. Analysis of his 2023-2025 publications reveals consistent innovation in proteasome-targeted therapeutics, with 15 high-impact papers featuring structural insights into enzyme-inhibitor complexes and biosynthetic pathways. Key trends include engineering megasynthetases for immunoproteasome inhibitors, optical control of protein degradation, and elucidating metal-dependent mechanisms in antibiotic biosynthesis. No scientific awards were documented in the provided source material. While specific grant details and student mentorship records were not disclosed, his extensive publication record indicates leadership in collaborative research projects involving structural biology and chemical biology methodologies. The Chair of Biochemistry under Prof. Groll operates as a hub for structural enzymology, housing facilities for protein crystallography, enzyme kinetics, and natural product characterization. His team actively contributes to TUM's research ecosystem through partnerships with pharmaceutical groups and international structural biology consortia.
Martin Burke is the May and Ving Lee Professor for Chemical Innovation and Professor of Chemistry at the University of Illinois Urbana-Champaign , with additional appointments in Biochemistry, Biomedical & Translational Sciences, and multiple campus institutes including the Beckman Institute and the Carl R. Woese Institute for Genomic Biology. Education B.S. Johns Hopkins University , 1998 Ph.D. Harvard University , 2003 M.D. Harvard Medical School , 2003 Research Interests Burke’s program centers on molecular prosthetics : the design, synthesis and application of small molecules that replicate or replace missing or dysfunctional proteins. His group pioneered iterative cross-coupling (ICC) using MIDA-protected haloboronic acids to automate the construction of complex natural products and function-oriented small molecules. Current projects target ion-channel replacement in cystic fibrosis, iron-transport restoration in anemia, and non-toxic antifungals that overcome drug resistance. Scientific Awards & Honors National Academy of Medicine (2021) AAAS Fellow (2021) ASCI Member (2021) iCON Award (2019) Mukaiyama Award, Japan (2019) ACS Nobel Laureate Award for Graduate Education (2017) Thieme-IUPAC Prize in Synthetic Organic Chemistry (2014) Elias J. Corey Award (2013) Arthur C. Cope Scholar Award (2011) Research Output & Impact Burke has authored >120 peer-reviewed articles, >30 patents, and his work has been cited >20,000 times. High-impact publications in Nature , Science , and Angewandte Chemie have advanced automated synthesis, molecular prosthetics, and cystic fibrosis therapeutics. Laboratory & Training The Burke Laboratories house a multidisciplinary team of graduate students, post-doctoral researchers, and physician-scientists developing next-generation molecular prosthetics. The group is supported by NIH, NSF, private foundations, and industry partnerships aimed at democratizing molecular innovation.
Levent Burak Kara is a Professor in the Department of Mechanical Engineering at Carnegie Mellon University (CMU), with a courtesy appointment in the Robotics Institute. He is a leading researcher in AI-driven computational design, additive manufacturing, and intelligent engineering systems, leading the Visual Design and Engineering Lab (VDEL) at CMU. Education: B.S., Mechanical Engineering, Middle East Technical University (1998) M.S., Mechanical Engineering, Carnegie Mellon University (2000) Ph.D., Mechanical Engineering, Carnegie Mellon University (2005) His research focuses on integrating machine learning, optimization, and geometric modeling to revolutionize engineering design and manufacturing. Key areas include topology optimization, CAD intelligence, digital twins, generative design, bioengineering, and electronic design automation. His work enables automation of traditionally labor-intensive design processes using deep learning and reinforcement learning. His recent publications reveal a strong trend toward physics-informed surrogate modeling, real-time simulation, manufacturability prediction, and AI-driven automation in mechanical, biomedical, and electronic systems. These works frequently appear in top journals such as Journal of Mechanical Design and Journal of Applied Mechanics , and at premier conferences like NeurIPS and DAC. Scientific Awards: National Science Foundation CAREER Award ASME Design Automation Society Young Investigator Award Google AI for Social Good Impact Scholar Kara advises several Ph.D. students and has secured significant funding from federal agencies such as the NSF and the U.S. Army Research Laboratory, as well as collaborations with industrial leaders including Cadence Design Systems and NVIDIA. His research is also supported by CMU’s NextManufacturing Center and the Critical Technology Initiative. He is actively involved in developing intelligent design systems that leverage AI to automate product design, optimize manufacturing processes, and improve medical diagnostics, particularly in oral cancer screening and organ preservation. His lab, VDEL, is a hub for innovation in AI-enabled engineering.
Dr. Richard Fair is the Lord-Chandran Distinguished Professor of Engineering at Duke University, with a career spanning semiconductor physics, digital microfluidics, and lab-on-a-chip systems. His research group collaborates with faculty across Duke, Harvard, and Stanford in bioengineering, genomics, and environmental science to develop applications-driven microfluidic platforms. Ph.D. in Electrical and Computer Engineering, Duke University (1969) B.S.E.E., Duke University (1964) M.S.E.E., Pennsylvania State University (1966) Research interests focus on electrowetting-based microfluidics for biosensing, diagnostics, and synthetic biology applications. Key innovations include adaptive droplet routing , magnetic bead manipulation , and integrated optical sensors for real-time analyte detection in environmental and medical contexts. Recent publications emphasize deep reinforcement learning for biochip automation, fluorescent nucleosome detection , and inorganic ion analysis in aerosols. Collaborations with institutions like Advanced Liquid Logic and NSF-funded projects highlight his interdisciplinary approach. IEEE Third Millennium Medal (2000) Solid State Science and Technology Award (Electrochemical Society, 2003) Gordon E. Moore Medal (2009) Fellow, IEEE and Electrochemical Society Grants include NSF awards with Nan Jokerst and Krish Chakrabarty for adaptive lab-on-a-chip optical control, DARPA funding for genomic engineering platforms, and collaborations with the Desert Research Institute on airborne particle sensing. His lab develops scalable solutions for environmental monitoring, clinical diagnostics, and synthetic biology applications.
Professor Hala Zreiqat AM is a leading biomedical engineer at The University of Sydney , serving as the Director of the ARC Training Centre for Innovative BioEngineering . A Fellow of all major Australian academies (AAS, ATSE, FAHMS, FRSN), she develops 3D printed bioceramics for bone regeneration while championing diversity through initiatives like the IDEAL Society and BIOTech Futures mentorship program. Her work bridges academia, clinical practice, and industry in musculoskeletal research . Research Focus: Her lab creates synthetic bone scaffolds that mimic natural bone architecture, strength, and porosity, enabling non-rejected bone regeneration via patient-matched implants. Key applications include orthopaedic, dental, and maxillofacial repair , with over $18M in competitive funding and multiple patents. Current projects explore AI-driven scaffold performance prediction and anti-senescence strategies for aging-related bone loss. Scientific Trends: Recent publications highlight 3D printed nanovoxelated ceramics , antisenescence biomaterials , and multifunctional theranostic platforms . Her team integrates machine learning for scaffold design, atom probe tomography for interface analysis, and two-photon imaging for cellular monitoring in 3D environments. 2021-2022 Fulbright Senior Scholar 2018 NSW Premier's Woman of the Year 2019 Eureka Prize for Innovative Use of Technology Fellow of Australian Academy of Science (2021) Over $18M in research funding Teaching & Leadership: She designed core courses like Tissue Engineering and Nanomaterials in Medicine , mentoring 158 students in 2020 alone. As Chair of CAAR (2020-2023), she strengthens Australia-Arab collaborations. Her lab trains early-career researchers , with alumni now in academia and industry.
Matthew Lakin is an Associate Professor with tenure in the Department of Computer Science at the University of New Mexico, with a courtesy appointment in the Department of Chemical & Biological Engineering. He is affiliated with the UNM Center for Biomedical Engineering and the School of Engineering, and collaborates extensively with the UNM Health Sciences Center and external institutions. Education: Ph.D., Computer Science, University of Cambridge, 2010 M.A. (Cantab), University of Cambridge, 2009 B.A. (Hons), Computer Science, University of Cambridge, 2005 Dr. Lakin's research focuses on molecular computing, DNA nanotechnology, synthetic biology, and formal verification of biomolecular circuits. He develops computational models and experimental systems for programmable biological devices, especially using heterochiral DNA to enhance stability in living cells. His work spans software tools for biodesign and experimental validation in mammalian systems, with applications in nanomedicine and biosensing. The recent publications highlight a strong trend in engineering robust, intelligent biomolecular systems. His work integrates machine learning concepts into chemical reaction networks, advances geometric modeling of DNA systems, and pioneers L-DNA-based circuits for intracellular applications. The research spans theoretical foundations, software tools, and wet-lab experimentation, emphasizing interdisciplinary innovation. Scientific Awards: Presidential Early Career Award for Scientists and Engineers (PECASE), 2025 NSF CAREER Award, 2021 UNM School of Engineering Junior Faculty Research Excellence Award, 2021 Multiple student awards under his mentorship, including the Outstanding Graduate Student Award and DNA28 Best Student Presentation recognition Dr. Lakin has advised numerous graduate and undergraduate students, including Ph.D. graduates in Biomedical Engineering and Computer Science. He leads major funded projects such as the NSF CAREER grant on heterochiral molecular computing, an EPSCoR Research Fellowship, and a $3M NSF grant on heavy metal biosensing in collaboration with Native American communities. He is also PI on multiple NSF grants related to synthetic cells and nucleic acid technologies. He directs the Lakin Lab for Programmable Biology, which operates within the Department of Computer Science and collaborates with Chemical & Biological Engineering and the Center for Biomedical Engineering. The lab emphasizes both computational modeling and experimental molecular biology, and runs an NSF-funded biotechnology summer camp in partnership with ¡Explora! science museum to strengthen STEM education in New Mexico.
Professor Klavs F. Jensen is the Warren K. Lewis Professor of Chemical Engineering and Professor of Materials Science and Engineering at MIT. His research focuses on integrating automation, machine learning, and robotics to accelerate materials discovery and pharmaceutical synthesis. He leads the Jensen Research Group, pioneering automated reaction systems with online analytics and optimization algorithms. Education: MS in Chemical Engineering (Technical University of Denmark, 1976); PhD in Chemical Engineering (University of Wisconsin, 1980). Research Interests: Thermochemistry, electrochemistry, photochemistry, Bayesian optimization, high-throughput experimentation, and AI-driven synthesis planning. He collaborates with MIT’s Machine Learning for Pharmaceutical Discovery Consortium to develop algorithms for drug development and process chemistry. Awards: Member of National Academy of Sciences (2017), Member of National Academy of Engineering (2002), Fellow of the American Association for the Advancement of Science (2007), and Fellow of the National Academy of Inventors (2022). Grants & Labs: Editor-in-Chief of Reaction Chemistry and Engineering ; holds 63 US patents and over 490 journal articles. His lab’s innovations include ASKCOS (open-source synthesis planning software) and automated platforms for closed-loop molecular discovery.
Amit Singer is a Professor of Mathematics at Princeton University, specializing in computational methods for structural biology and cryo-electron microscopy (cryo-EM). His work focuses on developing mathematical frameworks and algorithms for analyzing large-scale microscopy datasets, particularly in 3D reconstruction and heterogeneity analysis of molecular structures. He leads research in manifold learning, optimal transport, and harmonic analysis, with applications to cryo-EM, signal processing, and inverse problems. Research interests include: (1) Mathematical methods for cryo-EM, including particle alignment, density map analysis, and subspace-based reconstruction techniques; (2) Development of rotation-invariant representations for imaging problems; (3) Application of machine learning and optimization to biomedical imaging challenges. His contributions bridge pure mathematics (e.g., harmonic analysis, manifold theory) with applied computational techniques for real-world microscopy data. Key trends in his recent articles (2023–2025) include advancements in multi-reference alignment methods, Wasserstein distance-based image registration, and overcoming particle detection limitations in cryo-EM. He also explores sparsity constraints, autocorrelation analysis, and novel algorithms for handling heterogeneous datasets. These methods improve resolution and reduce computational costs in analyzing molecular structures at atomic scales. Notable contributions include the ASPiRE software package for steerable PCA, and foundational work on synchronization problems in cryo-EM orientation estimation. His research often addresses algorithmic scalability and robustness to noise in experimental setups.
Ashley M R Montanaro is a Professor of Quantum Computation at the School of Mathematics, University of Bristol . Active in quantum computing research since at least 2014, they lead projects at the intersection of quantum algorithms , computational complexity , and quantum information theory , affiliated with the Bristol Quantum Information Institute. Research interests focus on quantum algorithm design , computational complexity analysis , and quantum simulation . Key work includes developing variational quantum algorithms for phase transition detection, Hamiltonian simulation techniques, and quantum-classical hybrid methods for solving complex problems in physics and optimization. Recent publications demonstrate expertise in: Quantum phase diagram simulation with low-depth circuits Quantum speedups for constraint satisfaction problems Quantum communication complexity of machine learning tasks Quantum-enhanced optimization heuristics Hamiltonian simulation with time-dependent product formulas Quantum algorithm complexity analysis Scientific awards include: EPSRC Fellowship (2014-2019) - "New insights in quantum algorithms and complexity" Active in quantum software development through projects like: "Quantum Algorithms from Foundations to Applications" (ERC-2018-COG) "Quantum Computing and Simulation Hub" (2019-2024) "Prosperity Partnership in Quantum Software" (2019-2023)
Ana Damjanovic is an Assistant Research Professor in the Thomas C. Jenkins Department of Biophysics at Johns Hopkins University (JHU), affiliated with the Zanvyl Krieger School of Arts & Sciences. Her research focuses on ion channels, protein and membrane electrostatics, and computational biophysics. She holds a Ph.D. in Physics from the University of Illinois at Urbana-Champaign, where she studied quantum physics of photosynthetic light harvesting under Prof. Klaus Schulten. Subsequent postdoctoral research included work on photosynthesis with Prof. Graham Fleming at UC Berkeley, and molecular dynamics studies of protein ionization at JHU. Her current lab investigates ion channel mechanisms, protonation dynamics, and electrostatic effects in biological systems using advanced computational tools. Group members include graduate student Nauman Sultan (co-supervised with NIH's Bernard Brooks) and undergraduates Marianne Ri and Vivek Booshan. Past advisees include Ada Chen (now a NIH postdoc) and Maggie Li. Key research contributions include developing pH replica exchange methods, protein pKa prediction using machine learning, and structural-functional studies of voltage-gated sodium channels. Her work has been published in high-impact journals like Proceedings of the National Academy of Sciences and Biophysical Journal . Lab affiliations include the Computational Biophysics Group at JHU, with access to cutting-edge simulation techniques and experimental validation platforms. Ongoing projects explore ion channel selectivity, membrane protein dynamics, and computational modeling of protonation-dependent phenomena.
Dr. Gabriele Schweikert is a Senior Lecturer and Principal Investigator with a joint appointment between the Division of Computational Biology in the School of Life Sciences at University of Dundee and Cyber Valley in Tuebingen. Her research focuses on applying machine learning techniques to understand epigenetic mechanisms and molecular processes in living cells. Dr. Schweikert completed her PhD at the Max Planck Institute Tuebingen working with Schoelkopf, Weigel, and Raetsch labs on machine learning for computational gene finding. She subsequently joined Adrian Bird's lab at the Wellcome Trust Center for Cell Biology in Edinburgh, a pioneer in epigenomic research. Prior to her current position, she held prestigious Marie Curie and EMBO Fellowships at the School of Informatics, University of Edinburgh. Her research interests center on using machine learning to decode epigenetic mechanisms that determine cellular identity and function. She investigates how cells with identical DNA can differentiate into specialized cell types through epigenetic regulation, with particular focus on applications in understanding tumorigenesis where epigenetic machinery malfunctions. Her work combines high-throughput epigenomic data with advanced computational approaches to address complex biological questions. Analysis of her recent publications reveals a strong focus on epigenomic data analysis, machine learning applications in biology, and computational approaches to understanding gene regulation. Her work spans from fundamental epigenetic mechanisms to practical applications in disease research, with growing emphasis on individual-specific epigenomic analysis and explainable AI in biomedical contexts. UKRI Future Leaders Fellowship (2020, £1.6 million) Marie Curie Fellowship EMBO Fellowship Dr. Schweikert actively supervises PhD students and has received significant research funding for projects including 'Machine Learning Methods to Re-Annotate Histone Modifications,' 'Unlocking The Alternative Splicing Code,' and 'GPU-Based Machine Learning System For Fundamental Biological Research.' She is involved in multiple interdisciplinary collaborations and frequently presents her work at major conferences including ELLIS Health program retreat, Epigenetics Meetings, and RECOMB workshops. She maintains active research laboratories in both Dundee and Tuebingen, fostering international collaboration between computational biologists, machine learning experts, and experimental biologists to advance our understanding of epigenetic regulation in health and disease.
Konstantinos Kalogeropoulos is an Assistant Professor at the Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU), leading research at the Cell Diversity Lab. His work bridges proteomics, computational biology, and snake venom research. Current projects: "The Proteomic Landscape during Influenza Infection" (2022-2025) Supervisor for PhD projects on protease network rewiring in psoriasis and wound exudate degradomics Research interests include: Proteomic analysis of inflammatory diseases Snake venom toxin structure prediction Extracellular matrix biomechanics De novo peptide sequencing algorithms Computational modeling of protease networks Recent article trends demonstrate his work in • Database-free proteomics (InstaNovo/InstaNexus) • Snake venom pathophysiology (V-ToCs clustering) • Inflammatory disease biomarkers (psoriasis, impaired healing) • Extracellular matrix mechanics (fibronectin tension, gut inflammation) Advising: Supervises PhD students Polhaus, C. J. M. and Haack, A. M., focusing on protease networks and wound healing.
