Harri Lähdesmäki is an Associate Professor (tenured) at the Department of Computer Science, Aalto University, where he leads the Computational Systems Biology research group. His work focuses on probabilistic machine learning and deep generative models with applications in biomedicine and molecular biology. Key Research Interests: Probabilistic machine learning, deep generative models, computational biology, bioinformatics, longitudinal data modeling Contact: harri.lahdesmaki@aalto.fi | Konemiehentie 2, 02150 Espoo, Finland His recent publications highlight advancements in: Gaussian process priors for scalable deep generative models Single-cell analysis of immune repertoires in leukemia and diabetes Probabilistic deconvolution methods for RNA-seq data Epigenetic analysis using hidden Markov and mixed models Transformer-based survival prediction and missing data handling Harri’s work integrates mechanistic modeling with Bayesian inference, particularly applied to immunology, cancer biology, and early disease prediction.
Dr. Dmytro Matsypura is an Associate Professor in the Discipline of Business Analytics at the University of Sydney Business School. He holds a BA (Hons) from Kyiv Polytechnic Institute (KPI), an MS (Hons) from KPI, and a PhD from the University of Massachusetts Amherst. His research focuses on optimization methodologies, network science, and their applications in finance, transportation, ecology, and graph theory. He is a recipient of multiple teaching awards, including the Wayne Lonergan Outstanding Teaching Award (Early Career) in 2010. Education: PhD in Management Science, University of Massachusetts Amherst (2006) MS (Hons) in Information Systems, Kyiv Polytechnic Institute (2000) BA (Hons) in Business Administration, Kyiv Polytechnic Institute (1998) Research Interests: Dr. Matsypura’s work spans operations research and management science, with a focus on mathematical optimization and network science. His methodological contributions include developing efficient optimization algorithms, while his applied research addresses real-world challenges in finance, engineering, and ecology. Notable applications include wildfire fuel management, portfolio margining, and credit card fraud detection via graph-based models. Awards and Recognition: Teaching Excellence Award (2008, 2013, 2018) Wayne Lonergan Outstanding Teaching Award (Early Career) (2010) Grants and Projects: Current projects include Bushfire Analytics: Optimization of Fuel Reduction (2023, ARC Discovery Project). His research frequently integrates interdisciplinary collaborations, such as applying graph theory to biomedical problems and cybersecurity. Labs/Teams: Active in the Sydney Environment Institute, contributing to projects at the intersection of analytics and sustainability. Collaborates with industry on fraud detection and supply chain optimization.
Karoline Faust is an Associate Professor at KU Leuven, affiliated with the Laboratory of Molecular Bacteriology (Rega Institute) and the Faculty of Medicine . She contributes to the iSi Health and Leuven One Health institutes, and serves on senior academic councils. Her research spans microbial systems biology, focusing on community dynamics and network analysis. Education: PhD in bioinformatics (2010, KU Leuven) Affiliations: KU Leuven, ISME Journal editorial board, Belgian Society for Microbiology Her research investigates microbial community dynamics , systems biology approaches to microbiomes, and bioinformatics tool development . She specializes in modeling human gut microbiota , synthetic microbial communities , and environmental microbiomes (e.g., microplastic impacts on Daphnia microbiomes). Her work integrates metabolic modeling , network analysis , and experimental systems to understand microbial interactions. Recent publications highlight her contributions to microbial network inference , 16S rRNA sequencing protocols , microfluidics , and ecological modeling of microbiomes. She develops tools like manta , miaSim , and CoNet to analyze community structures. Teaching: Karoline co-teaches courses in microbiology, bioinformatics, and network analysis at KU Leuven, and has contributed to international workshops on microbial network inference. Scientific Engagement: She serves as Senior Editor at ISME Journal and Secretary of the Belgian Society for Microbiology .
Alfred O. Hero, III is the John H. Holland Distinguished University Professor of Electrical Engineering and Computer Science and the R. Jamison and Betty Williams Professor of Engineering at the University of Michigan, Ann Arbor. He is currently on leave from the University of Michigan as a Program Director in the CISE Directorate at the National Science Foundation. His primary appointment is in the Department of Electrical Engineering and Computer Science (EECS), with secondary appointments in the Department of Biomedical Engineering and the Department of Statistics. He is also affiliated with the UM Center for Computational Medicine and Bioinformatics (CCMB), the UM Graduate Program in Applied and Interdisciplinary Mathematics (AIM), the UM Applied Physics Program, and the Michigan Institute for Data Science (MIDAS), which he co-founded from 2015-2018. Hero's research focuses on data science, developing theory and algorithms for multimodality data collection, fusion, analysis and visualization that use statistical machine learning and distributed optimization. His work has applications in wearable technologies for personalized health and predictive medicine, spatio-temporal networks in biology, climate, and social discourse, anomaly detection, and data analysis for international security. His recent research interests include high dimensional spatio-temporal data analysis, multimodal data integration, statistical signal processing, and machine learning, with particular emphasis on predictive mathematical models for biological and physical sciences, social networks, network security and forensics, and personalized health and disease. His recent publications demonstrate a strong focus on high-dimensional statistical methods, contrastive learning, neural network optimization, change detection in temporal graphs, and applications in microbiome analysis and epidemic modeling. The research spans theoretical foundations in information theory and statistical learning while addressing practical applications across multiple domains. Scientific Awards: IEEE Signal Processing Society Best Paper Award (1998) Best Original Paper Award from Journal of Flow Cytometry (2008) Best Magazine Paper Award from IEEE Signal Processing Society (2010) SPIE Best Student Paper Award (2011) IEEE ICASSP Best Student Paper Award (2011) IEEE Signal Processing Society Technical Achievement Award (2014) IEEE Signal Processing Society Society Award (2015) IEEE Fourier Award (2020) University of Michigan Distinguished Faculty Achievement Award (2011) Hero has advised over 60 PhD students and 30 postdocs in areas including modeling, computation, and inference for large scale time varying data in the biosciences. He has received significant research funding from the Department of Energy, Army Research Office, Air Force Office of Scientific Research, and National Science Foundation. He has held leadership positions including President of the IEEE Signal Processing Society (2006-2007), Director of Division IX (Signals and Applications) on the IEEE Board of Directors (2009-2011), and Chair of the Committee on Applied and Theoretical Statistics of the US National Academies (2018-2020).
Long Cai is a Professor at the California Institute of Technology, affiliated with the Biology and Biological Engineering department. He pioneered the field of spatial genomics and co-developed transformative technologies such as seqFISH and MEMOIR. Research Interests: His work focuses on decoding biological systems through spatial genomics, integrating molecular imaging with computational analysis to uncover cellular organization in tissues. Key areas include developmental biology, neuroscience, kidney regeneration, and cancer biology. Publications: Recent studies highlight applications of spatial transcriptomics in kidney disease, brain nuclear architecture, and multi-omics tissue mapping. His research emphasizes creating high-resolution atlases of cellular dynamics. Scientific Awards: NIH Director’s Pioneer Award (2022) Labs & Collaborations: He leads the Cai Lab, which develops cutting-edge imaging tools in collaboration with the Elowitz Lab and other interdisciplinary teams.
Jennifer L. Clarke is a Professor in the Department of Statistics at the University of Nebraska–Lincoln and Director of the Quantitative Life Science Initiative. She holds leadership roles in enabling big data integration across the University of Nebraska system through collaborative research programs. Her affiliations include the Institute of Agriculture and Natural Resources (IANR) and the College of Agriculture and Natural Resources. Dr. Clarke's research focuses on statistical methodology for high-dimensional data, computational biology, bioinformatics, and bacterial genomics. Her work bridges statistical innovation with applications in oncology, microbiome analysis, and agricultural phenomics. Key areas include predictive modeling, machine learning, and genomic/metagenomic data integration. Her recent publications span cancer biomarker discovery, plant phenotyping methodologies, and microbial community analysis, reflecting her interdisciplinary approach. Articles emphasize translational applications like therapeutic target identification and precision agriculture. Dr. Clarke leads initiatives fostering collaboration between statisticians and domain scientists, including the Quantitative Life Science Initiative and contributions to the Agricultural Genome-to-Phenome Initiative (AG2PI). Her work advances data-driven solutions for healthcare and food security challenges. Notable projects include developing statistical tools for microbiome studies, analyzing root architecture via 3D imaging, and investigating cranberry-derived compounds' cancer-inhibitory mechanisms. Her methodological contributions include hybrid clustering techniques and predictive model validation frameworks.
Xiang Ji is an Assistant Professor in the Department of Mathematics at Tulane University, affiliated with the School of Science & Engineering. His research focuses on statistical phylogenetics, computational biology, and bioinformatics, particularly in viral evolution and genomic epidemiology. He collaborates with Dr. Wu-Min Deng on cancer biology research from a bioinformatics perspective. Education: Ph.D., 2017: Bioinformatics and Statistics (Co-Major), North Carolina State University M.S., 2013: Material Science and Engineering, North Carolina State University B.S., 2011: Economics (Double Major) and Physics, Peking University Research Interests: Dr. Ji develops statistical models and computational tools for phylogenetic analysis, including scalable algorithms for large-scale genomic data. His work spans viral evolution, zoonotic disease surveillance, and parallel computing libraries for Bayesian inference. He emphasizes practical implementations such as Torchtree and TreeFlow . Articles Trends: Recent publications emphasize viral evolution dynamics (e.g., SARS-CoV-2, avian influenza), genomic surveillance strategies, and computational methods for phylogenetic inference. His work often bridges statistical theory with real-world applications in public health and epidemiology. Advising & Grants: While specific grant details are not listed, his active research program indicates involvement in funding initiatives related to computational biology and viral evolution. He teaches advanced courses in data analysis, linear models, and probability theory. Labs & Teams: Collaborates with Tulane’s Cancer Biology group and maintains partnerships with institutions globally, focusing on genomic epidemiology and phylogenetic software development.
Xiuwei Zhang is the J.Z. Liang Early-Career Assistant Professor in the School of Computational Science and Engineering (SCoSE) at Georgia Institute of Technology, part of the College of Computing. Her research focuses on computational biology and bioinformatics, particularly in developing machine learning methods for analyzing single-cell omics data, including multi-modal, temporal, and spatial data integration. She leads a lab that designs tools like scDART , scMoMaT , and scMultiSim , which address challenges in multi-omics integration, lineage reconstruction, and simulation. Before joining Georgia Tech, she held postdoctoral positions at UC Berkeley (Nir Yosef’s group), the European Bioinformatics Institute (EBI), and École Polytechnique Fédérale de Lausanne (EPFL). She earned her PhD in computer science from EPFL under Bernard Moret. Her Erdős number is 3, reflecting her collaborative work across computational fields. Her research spans four key areas: multi-batch/single-cell data integration, temporal analysis of cell differentiation, spatial-temporal omics dynamics, and simulation tools for benchmarking methods. She has received prestigious awards, including the NSF CAREER Award (2022) and NIH MIRA (2021). She actively participates in conferences (RECOMB, ISMB) and serves on editorial boards (Journal of Computational Biology). Her group’s recent work includes the scMultiSim simulator (2025), which generates multi-omics spatial data, and LinRace (2023), reconstructing cell lineage histories. She mentors over 15 students and collaborates internationally on projects like the InQuBATE Workshop on Single-Cell Transcriptomics.
Stefania Dumbrava is an Associate Professor of Computer Science at ENSIIE (École Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise) and a permanent member of the ACMES team in the SAMOVAR laboratory at Télécom SudParis, Institut Polytechnique de Paris. She is also actively involved in the Property Graph Schema Working Group and the European Research Network on Formal Proofs (EuroProofNet). Education PhD in Computer Science, Université Paris-Sud (2016) MSc in Computer Science, Jacobs University Bremen (2012) BSc in Mathematics, Jacobs University Bremen (2010) Research Interests Dumbrava's research lies at the intersection of formal methods and data management . She designs and verifies algorithms and systems for graph databases , with emphasis on property graphs , schema discovery , query optimization , and distributed graph processing . Recently, her work focuses on certifying large-scale distributed graph systems under the ANR JCJC VERDI project (2025–2029). Awards & Honors SIGMOD Best Paper Award 2023 – “PG-Schema: Schemas for Property Graphs” SIGMOD Research Highlight Award 2023 – “Threshold Queries” VLDB 2022 Best Regular Research Paper Runner-Up – “Threshold Queries in Theory and in the Wild” SIGMOD 2025 Distinguished Reviewer Award ICDE 2025 Best Program Committee Member Award EASST Best Software Science Paper Award, ICGT 2025 Students & Grants Dumbrava has supervised numerous research interns and is actively recruiting PhD students for her ANR VERDI project on verified foundations of large-scale distributed graph systems. She has also served on six PhD thesis committees as examiner since 2021. Labs & Teams She leads the ACMES research group within the SAMOVAR laboratory (Télécom SudParis, Institut Polytechnique de Paris), where her team develops formally verified graph-database engines and tools such as GRASP, VerDILog, and DatalogCert.
Rex Ying is an Assistant Professor in the Department of Computer Science at Yale University's School of Engineering & Applied Science. He leads research in graph neural networks, geometric representation learning, and explainable AI, with applications spanning physical simulations, biology, knowledge graphs, and recommender systems. His lab actively recruits PhD students interested in geometric deep learning, graph neural networks, and trustworthy AI. Dr. Ying received his PhD in Computer Science from Stanford University under Jure Leskovec, with a thesis titled "Towards Expressive and Scalable Deep Representation Learning for Graphs." Prior to that, he graduated from Duke University in 2016 with highest distinction, majoring in Computer Science and Mathematics. His research focuses on three interconnected areas: advancing graph neural network architectures for improved expressiveness, scalability, and interpretability; innovating in geometric representation learning for data with diverse characteristics; and developing real-world applications across scientific domains. He has pioneered influential algorithms including GraphSAGE, PinSAGE, and GNNExplainer, and developed the first billion-scale graph embedding services at Pinterest as well as graph-based anomaly detection algorithms at Amazon. His recent publication trends show a strong focus on hyperbolic geometry for foundation models, non-Euclidean representation learning, and multimodal applications in computational biology. The research demonstrates increasing integration of geometric deep learning with large language models and foundation model architectures. KDD 2022 Dissertation Award 2019 Baidu Scholarship in Artificial Intelligence Dr. Ying actively serves the research community as a committee member for major conferences including AAAI, ICML, NeurIPS, ICLR, KDD, and WebConf for over seven years, and as area chair for LoG 2022. He co-leads the open-source PyTorch Geometric project and has organized numerous workshops on graph learning. His industry collaborations include Pinterest, Amazon, Facebook AI Research, DeepMind, Siemens, SLAC National Accelerator Laboratory, and Saudi Aramco. He teaches "Deep Learning for Graph-Structured Data" at Yale and mentors students in developing cutting-edge graph learning algorithms. His research lab collaborates with both academic institutions and industry partners to advance the state-of-the-art in graph representation learning, with particular emphasis on geometric deep learning and its applications to scientific discovery and real-world systems.
Dr. Vincent Fortuin is a tenure-track Assistant Professor at the Technical University of Munich (TUM) and a research group leader at Helmholtz AI in Munich. He leads the Efficient Learning and Probabilistic Inference for Science (ELPIS) group and holds multiple prestigious fellowships including the Branco Weiss Fellowship. His academic affiliations include the TUM School of Computation, Information and Technology, the Konrad Zuse School of Excellence in Reliable AI, and the Munich Center for Machine Learning. Dr. Fortuin earned his BSc in Molecular Life Sciences from the University of Hamburg (2012-2015), followed by an MSc in Computational Biology and Bioinformatics from ETH Zürich (2015-2017), where he received the ETH Excellence Scholarship and the Willi Studer Prize. He completed his PhD in Machine Learning at ETH Zürich (2017-2021) under the supervision of Gunnar Rätsch and Andreas Krause, supported by a Swiss Data Science Center PhD Fellowship. Prior to joining TUM, he was a Research Fellow at St. John's College, University of Cambridge (2022-2023). His research focuses on the intersection of Bayesian statistics and deep learning, specifically developing methods for more robust, data-efficient AI systems with reliable uncertainty estimates. His work addresses critical limitations in standard deep learning approaches, particularly their tendency to be overconfident in predictions and require large datasets for training. He investigates better priors and more efficient inference techniques for Bayesian deep learning, deep generative modeling, meta-learning, and PAC-Bayesian theory, with applications in scientific and biomedical domains. Dr. Fortuin's recent publications demonstrate a consistent focus on improving uncertainty quantification in deep learning systems, with increasing emphasis on practical applications in scientific contexts. His work spans from theoretical foundations of Bayesian deep learning to practical implementations in protein design, materials science, and medical applications. A notable trend is his exploration of how to make Bayesian methods more scalable and applicable to modern large-scale AI systems while maintaining theoretical guarantees. Branco Weiss Fellowship (2023) St John's College Research Fellowship (2022) Swiss National Science Foundation Postdoc.Mobility Fellowship (2022) Swiss Data Science Center PhD Fellowship (2018) ETH Excellence Scholarship (2015) Willi Studer Award (2018) Dr. Fortuin actively supervises PhD and Master's students through his ELPIS research group at Helmholtz AI. He serves as a regular reviewer and area chair for major machine learning conferences and is an action editor for TMLR. He co-organizes the Symposium on Advances in Approximate Bayesian Inference (AABI) and the ICBINB initiative, demonstrating his commitment to advancing the field through community building. His research group receives funding from multiple sources including Helmholtz AI, the Branco Weiss Fellowship, and collaborations with international institutions. Dr. Fortuin leads the Efficient Learning and Probabilistic Inference for Science (ELPIS) group at Helmholtz AI, which focuses on fundamental machine learning research motivated by real-world scientific problems. The group collaborates extensively with researchers across Helmholtz centers and international institutions, particularly in biomedical applications where reliable uncertainty estimates are crucial.
Hugo de Boer is a Professor at the Copernicus Institute of Sustainable Development , Faculty of Geosciences, Utrecht University. He serves as scientific lead for the Delta Climate Center in Vlissingen and coordinates MSc programs in Water Science and Management and Water Management for Climate Adaptation . His research explores climate-ecosystem interactions, focusing on plant ecophysiology, ecosystem dynamics, and nature-inclusive climate adaptation in deltas. Research Themes: Future Deltas, Pathways to Sustainability, Integrative Bioinformatics Projects: LEMONTREE, CloudRoots, 'From losers to winners' (ancient plant lineages under elevated CO2) Teaching Expertise: System thinking for sustainability, quantitative statistics, plant ecophysiology Research Trends emphasize interdisciplinary approaches to climate change impacts on ecosystems, with publications spanning plant-cloud processes, CO2 acclimation, and eco-evolutionary optimality models. His work bridges biogeochemistry, land-atmosphere interactions, and sustainable development frameworks. Projects & Collaborations include experimental studies on ancient plant lineages (Equisetum) and integrative field campaigns in Amazon and temperate forests. He contributes to modeling climate-vegetation feedbacks, pesticide emission scenarios, and social-ecological system transitions.
Prof. Martin Boeker is a Professor of Medical Informatics at the Technical University of Munich (TUM), affiliated with the TUM School of Medicine and Health. His work focuses on advancing healthcare through AI-driven solutions, interoperability frameworks, and precision medicine initiatives. Key projects include the German Medical Text Corpus (GeMTeX) and the MIRACUM DIFUTURE Alignment Hub. Expertise: Medical Informatics, AI in Healthcare, Federated Learning, Health Data Integration Key Contributions: FHIR-based systems, clinical decision support, patient-centered outcomes research Leadership: Director of the Institute for AI and Informatics in Medicine at TUM Hospital Right of the Isar Research emphasizes bridging clinical practice and data science through projects like modular health crawlers, automated guideline adherence monitoring, and cross-institutional medical NLP solutions. His work spans oncology informatics, rare disease management, and pandemic response data ecosystems. Recent articles highlight innovations in digital twins for precision oncology, federated analysis in oncology, and German-language medical NLP challenges. He collaborates internationally on EHR standardization and healthcare interoperability, contributing to the Medical Informatics Initiative (MII) and pandemic evidence ecosystems. Grants and collaborations involve the German Federal Ministry of Education and Research, European initiatives, and industry partnerships. Educational efforts focus on training future medical informatics professionals through MII competency programs.
Yasushi Sakurai is a Professor in the Department of Translational Datability at Osaka University's Institute of Scientific and Industrial Research, co-leading the Sakurai and Matsubara Laboratory within the Center for Industrial Science and AI. His research mission focuses on transforming society through real-time prediction of natural and social phenomena using large-scale data analytics, with emphasis on practical technological implementation. His research spans time-series big data analysis, dynamic learning systems, and real-time information provision. Key areas include tensor stream mining, EEG-based healthcare applications, cybersecurity anomaly detection, and multi-omics cancer subtyping. The lab specializes in developing deployable technologies that optimize social activities through predictive modeling of evolving data streams. Recent publications (2023-2025) reveal concentrated innovation in time-series data stream processing, with dominant themes in tensor analytics, frequency-domain forecasting, and causal modeling. His team produces high-impact work accepted at premier AI venues (ICLR, AAAI, KDD, WWW), consistently featuring oral presentations that highlight technical novelty and societal relevance. Scientific Awards: FY2024 Minister of Education, Culture, Sports, Science and Technology Award for Science and Technology (Research Category) for dynamic learning and real-time data stream analysis Professor Sakurai mentors graduate students including Naoki Chihara (DEIM2024 Outstanding Paper Award winner), Yuka Tamura (DEIM2024 Student Presentation Award winner), and Ren Fujiwara. His lab maintains active industry-academia partnerships focused on practical technology deployment, with research directly addressing real-world challenges in healthcare monitoring and cybersecurity. The Sakurai and Matsubara Laboratory operates as a dynamic research unit within Osaka University's Center for Industrial Science and AI, structured around specialized teams for tensor stream analysis, medical data mining, and network dynamics. Current projects emphasize real-time prediction systems with immediate societal applications, supported by strong industry collaboration frameworks.
Dr. Hongtu Zhu is the Kenan Distinguished Professor of Biostatistics, Statistics, Radiology, Computer Science, and Genetics at the University of North Carolina at Chapel Hill (UNC). He holds affiliations with the Gillings School of Global Public Health and leads the Biostatistics and Imaging Genomics Analysis Lab. His expertise spans statistical learning, medical imaging, AI, and big data integration, with a focus on precision medicine and biomedicine. Dr. Zhu earned his PhD in Statistics from The Chinese University of Hong Kong (2000) and has held prior roles including DiDi Fellow/Chief Scientist (2018-2020) and Bao-Shan Jing Endowed Professor at MD Anderson Cancer Center (2016-2018). He has published over 345 peer-reviewed articles in top-tier journals like Nature, Science, and JASA, and actively contributes to editorial roles including Coordinating Editor of JASA. His research interests include neuroimaging analysis, knowledge graphs, and AI applications in healthcare. Notable awards include the COPSS Snedecor Award (2025), IEEE Fellowship (2025), and IMS Medallion (2027). He has mentored over 80 PhD students/postdoctoral fellows and serves on NIH grant review panels and professional organizations like the ASA's Section on Statistics in Imaging. Key Contributions: Imaging genomics, brain connectivity studies, ridesharing market optimization, medical AI frameworks Lab Innovations: Brain Imaging Genetics Knowledge Portal, Biomedical Knowledge Graph Interface Teaching: Advanced biostatistics courses (Generalized Linear Models, Deep Learning in Biomedicine) Recent work explores causal inference in healthcare, X chromosome's role in neurobiology, and AI ethics in medical vision-language models. His interdisciplinary projects bridge statistics, computer science, and clinical practice to address complex biomedical challenges.
