جست‌وجوی استاد و پژوهشگر

• Epigenetics
• Retroelements
• Transposable elements
• +۵ مورد دیگر

Didier Trono is a Full Professor at École Polytechnique Fédérale de Lausanne (EPFL), where he leads the Laboratory of Virology and Genetics (LVG) within the School of Life Sciences. Formerly, from 2004 to 2012, he served as the founding dean of EPFL's Faculty of Life Sciences, orchestrating its development and growth during this formative period. Trono received his medical education at the University of Geneva, followed by clinical training in pathology, internal medicine, and infectious diseases in Geneva and at Massachusetts General Hospital in Boston. His scientific career began at the Whitehead Institute of MIT, and in 1990 he was recruited by the Salk Institute of San Diego to launch an AIDS research center. After seven years in the United States, he returned to Europe and eventually joined EPFL. Dr. Trono's research has evolved significantly over his career. Initially focusing on virus-host interactions, he studied pathogens like HIV and Hepatitis B virus, creating HIV-derived genetic transfer tools that are now successfully used in gene therapy. For approximately the last fifteen years, his research has centered on epigenetics, particularly exploring the impact of retroelements and their control mechanisms on development and physiology of higher organisms, including humans. His laboratory investigates how transposable elements and KRAB zinc finger proteins regulate gene expression, with important implications for understanding cancer biology and developing new diagnostic and therapeutic approaches. Analysis of his recent publications (2022-2024) reveals a strong focus on transposable elements, KRAB zinc finger proteins, and their roles in gene regulation and cancer. His work combines molecular biology, genomics, and bioinformatics approaches to understand how these ancient viral remnants have been co-opted by the host genome to regulate development and cellular functions. The research spans basic molecular mechanisms to potential clinical applications in cancer diagnosis and therapy, with some recent work also addressing SARS-CoV-2 and immune responses. Throughout his career, Professor Trono has mentored numerous PhD students, including Bojkowska Karolina, Brandão Sanches Vong Martins Filipe Amândio, Bulliard Yannick, Coluccio Andrea, Corsinotti Andrea, Coudray Alexandre, De Tribolet-Hardy Jonas Caspar, and Dorschel Iris Arianna. His laboratory has received significant funding to support research at the intersection of virology, genetics, and epigenetics, contributing to EPFL's reputation as a leading institution in life sciences research. The Trono Laboratory continues to be at the forefront of research on retroelements and their regulatory mechanisms, maintaining a vibrant research environment that bridges fundamental biological questions with potential medical applications, particularly in cancer research and precision medicine.

Syed Hani Hassan Abidiمشاهده پروفایل

دانشیار

• Virology
• Immunology
• Viral Oncology
• +۷ مورد دیگر

Syed Hani Hassan Abidi is an Associate Professor at the Department of Biomedical Sciences , School of Medicine , Nazarbayev University , Kazakhstan. His research integrates virology , immunology , viral oncology , and bioinformatics , with a focus on HIV molecular epidemiology , viral evolution , and drug resistance . He has led international projects across Pakistan, Kenya, Afghanistan, and Kazakhstan, and is recognized for innovative teaching and MOOC development. Education: PhD in Virology and Immunology Research Interests: His laboratory employs bioinformatics (machine learning, AI), genomics , and proteomics to study HIV phylodynamics , viral co-infections , and oncogenic viruses like EBV in prostate cancer. He also explores microbiome-immunity interactions and designs antiviral drugs/vaccines . Recent Research Trends: His 2025 publications emphasize COVID-19 immunopathology , HIV/syphilis epidemiology in Pakistan , and particle physics contributions via ATLAS , showcasing interdisciplinary impact. Awards & Recognition: Outstanding Teachers Award (2019, Aga Khan University) Fellowship of Higher Education (UK, 2022) Teaching & Grants: He pioneered Pakistan’s first MOOC on Computer-Based Drug Discovery (2014) and received a 2022 SoTL grant for MOOC-based molecular biology education. His teaching integrates animations , films , and flipped classrooms . Collaborations & Labs: Leads projects on HIV drug resistance , HCV genomics in Kazakhstan , and AI-driven dementia diagnostics (Kazakh Brain Atlas). His lab collaborates with global institutions to advance viral disease surveillance and therapeutic innovation .

Martin T. Wellsمشاهده پروفایل

استاد

• Applied Statistics
• Theoretical Statistics
• Bayesian Statistics
• +۷ مورد دیگر

Martin T. Wells is the Charles A. Alexander Professor of Statistical Sciences at Cornell University, with joint appointments in the Department of Statistical Science, Department of Biological Statistics and Computational Biology, Department of Social Statistics, and as Professor of Clinical Epidemiology and Health Services Research at Weill Medical School. He serves as Editor-in-Chief of the ASA-SIAM Book Series and Co-Editor of the Journal of Empirical Legal Studies. Cornell University, Ithaca, NY Weill Cornell Medical College Research Interests span applied and theoretical statistics, Bayesian methods, biostatistics, clinical epidemiology, and computational biology. His work bridges disciplines like finance, legal studies, and health services research. Article Trends highlight advancements in Bayesian modeling, quantum cognition machine learning, tensor analysis, and misclassification correction, with applications in genomics, finance, and public health. Fellow of the American Statistical Association Fellow of the Royal Statistical Society Contributions include developing statistical software (e.g., rTensor), methodological innovations in clinical trials, and empirical legal studies on civil rights and the death penalty.

• RNA Biology
• Bioinformatics
• Plant Molecular Biology
• +۴ مورد دیگر

Peter Brodersen is a Professor at the Department of Biology, University of Copenhagen , specializing in Bioinformatics and RNA Biology . His research focuses on RNA modification (m6A), YTHDF proteins, and small RNA pathways in plants. Recent research trends from his group include: (1) molecular mechanisms of ARGONAUTE-small RNA interactions, (2) m6A-YTHDF regulatory systems in plant development, and (3) RNAi-independent roles of DICER-LIKE proteins in antiviral defense. Collaborations span Denmark and international institutions. Publications highlight cross-disciplinary work bridging computational biology and experimental plant genetics. Key subfields include RNA structure, epigenetic regulation, and antiviral immunity.

Mihai Popمشاهده پروفایل

استاد

• Bioinformatics
• Genomics
• Computational Biology
• +۳ مورد دیگر

Dr. Mihai Pop is a Professor of Computer Science and Director of the University of Maryland Institute for Advanced Computer Studies (UMIACS). He holds appointments in the Department of Computer Science, UMIACS, and the Center for Bioinformatics and Computational Biology (CBCB). His research focuses on computational biology, metagenomics, and algorithm development for genomic data analysis. He received a Ph.D. in Computer Science from Johns Hopkins University (2000), followed by work at The Institute for Genomic Research (TIGR) developing genome assembly algorithms. Education: Ph.D., Computer Science, Johns Hopkins University, 2000. Research Interests: Bioinformatics, genomics, metagenomics, computational geometry, software testing. His lab develops tools for analyzing microbial communities and has pioneered methods for metagenomic assembly and analysis. Notable tools include the AMOS genome assembly toolkit. Recent Article Trends: Recent work emphasizes long-read sequencing, metagenomic profiling (e.g., TIPP3), and strain-level analysis (e.g., Strainy). He addresses challenges in scaling sequence-based searches and improving taxonomic resolution in large datasets. Awards: ACM Fellow (2019), ISCB Fellow (2022), UMD Excellence in Teaching Award (2015). Grants & Leadership: Co-leader of the Human Microbiome Project data analysis group. Active in diversity initiatives to promote inclusivity in computational fields. Labs/Teams: Pop Lab (pop-lab.org) focuses on computational methods for microbial genomics and metagenomics.

Ahmet Acarمشاهده پروفایل

دانشیار

• Cancer Biology
• Precision Medicine
• Drug Resistance Mechanisms
• +۳ مورد دیگر

Dr. Ahmet Acar is an Associate Professor at the Department of Biological Sciences, Middle East Technical University (METU), Ankara, Turkey. He leads the Cancer Precision Medicine and Drug Resistance Laboratory, focusing on understanding mechanisms of drug resistance in cancer. His research integrates experimental models, next-generation sequencing, and deep learning to address clinical challenges in cancer therapy. Dr. Acar holds a B.Sc. from METU's Biological Sciences department and a Ph.D. from the Cancer Research UK Manchester Institute. He completed postdoctoral training at the Institute of Cancer Research, London, and the University of Manchester. Research Interests: Drug resistance mechanisms, precision oncology, tumor microenvironment modeling, patient-derived organoids, computational pathology, and evolutionary cancer biology. His lab develops 2D/3D co-culture systems, PDO biobanks, and AI-driven histopathology tools to improve treatment strategies. Recent Work Trends: Recent publications emphasize tumor evolution modeling, matrix mechanics in drug resistance, and AI applications in histopathology. Collaborations with hospitals in Turkey and Europe support PDO biobank initiatives. His team explores evolutionary steering strategies to exploit collateral drug sensitivities. Labs/Teams: Precision Medicine and Drug Resistance Lab at METU focuses on interdisciplinary approaches combining wet-lab experiments with computational methods. Current projects include ex vivo tumor modeling and AI-driven diagnostic tools for oncology.

Xiang Jiمشاهده پروفایل

استادیار

• Statistical Phylogenetics
• Bioinformatics
• Viral Evolution
• +۳ مورد دیگر

Xiang Ji is an Assistant Professor in the Department of Mathematics at Tulane University, affiliated with the School of Science & Engineering. His research focuses on statistical phylogenetics, computational biology, and bioinformatics, particularly in viral evolution and genomic epidemiology. He collaborates with Dr. Wu-Min Deng on cancer biology research from a bioinformatics perspective. Education: Ph.D., 2017: Bioinformatics and Statistics (Co-Major), North Carolina State University M.S., 2013: Material Science and Engineering, North Carolina State University B.S., 2011: Economics (Double Major) and Physics, Peking University Research Interests: Dr. Ji develops statistical models and computational tools for phylogenetic analysis, including scalable algorithms for large-scale genomic data. His work spans viral evolution, zoonotic disease surveillance, and parallel computing libraries for Bayesian inference. He emphasizes practical implementations such as Torchtree and TreeFlow . Articles Trends: Recent publications emphasize viral evolution dynamics (e.g., SARS-CoV-2, avian influenza), genomic surveillance strategies, and computational methods for phylogenetic inference. His work often bridges statistical theory with real-world applications in public health and epidemiology. Advising & Grants: While specific grant details are not listed, his active research program indicates involvement in funding initiatives related to computational biology and viral evolution. He teaches advanced courses in data analysis, linear models, and probability theory. Labs & Teams: Collaborates with Tulane’s Cancer Biology group and maintains partnerships with institutions globally, focusing on genomic epidemiology and phylogenetic software development.

• Behavioral Ecology
• Evolutionary Biology
• Population Ecology
• +۱۱ مورد دیگر

Prof. Dr. Oliver Krüger is a behavioral ecologist and evolutionary biologist at Bielefeld University 's Faculty of Biology , where he leads the Department of Animal Behaviour since 2013. His research spans avian and marine mammal systems, focusing on life history strategies, parasite-host interactions, and environmental adaptation. Education: Biology studies at Bielefeld University (1994-1996) MSc in Oxford (1996-1997) PhD at Bielefeld University with Fritz Trillmich and Jan Lindström (1998-2000) Research Themes: Behavioral ecology, evolutionary biology, and population dynamics across tropical and temperate ecosystems. Key projects include NC³ (Niche Choice/Construction) and studies on Galápagos sea lions, common buzzards, and pinniped species. Scientific Leadership: Spokesperson, SFB TRR 212 "NC³" (2018-2025) Advisory Board member: German Ornithologists Union, IUCN SSC pinniped group, German Primate Centre Peer review roles: Humboldt Foundation, DFG, HFSP, NSF Awards: Leopoldina Prize (2001) Niko Tinbergen Award (2008) DFG Heisenberg Professorship (2010-2015)

Carla P. Gomesمشاهده پروفایل

استاد

• Artificial Intelligence
• Constraint Reasoning
• Optimization
• +۳ مورد دیگر

Carla P. Gomes is a Professor of Computer Science at Cornell University with joint appointments in the Department of Computer Science and the Dyson School of Applied Economics and Management. She holds a PhD in computer science from the University of Edinburgh and an M.Sc. in applied mathematics from the University of Lisbon. Her research focuses on artificial intelligence, constraint reasoning, optimization, and computational sustainability. As Director of the Institute for Computational Sustainability (ICS) and co-director of the Cornell University AI for Science Institute, she leads efforts to integrate AI with sustainability challenges. Her research themes include the integration of constraint reasoning, machine learning, and operations research to solve large-scale problems. She pioneered the field of Computational Sustainability, addressing environmental, economic, and societal challenges through AI. Gomes directed two NSF Expeditions in Computing awards and established CompSustNet, a large-scale sustainability research network. Key awards include the 2021 ACM–AAAI Allen Newell Award, AAAI Feigenbaum Prize, and fellowships from AAAI, ACM, and AAAS. Her work spans over 200 publications, with contributions to AI, sustainability, and materials discovery. She advises numerous PhD students and oversees postdocs in AI, sustainability, and interdisciplinary projects. Gomes' lab focuses on AI for scientific discovery, including autonomous materials synthesis and crystal-structure phase mapping. She collaborates with institutions like JCAP and the Materials Project, advancing AI-driven solutions for energy and environmental challenges. Current projects include Schmidt AI in Science postdoc initiatives and AI-driven materials discovery platforms like DRNets and SARA.

Michael Baymمشاهده پروفایل

دانشیار

• Microbial Evolutionary Genomics
• Antibiotic Resistance
• Computational Biology
• +۷ مورد دیگر

Dr. Michael Baym is an Associate Professor of Biomedical Informatics at Harvard Medical School with affiliate appointments in Microbiology and the Laboratory of Systems Pharmacology, and as an Associate Member of the Broad Institute. He leads the Baym Lab, which studies microbial evolutionary genomics and antibiotic resistance through a hybrid of experimental, computational, and theoretical approaches. His research focuses on: Antibiotic Resistance Evolution and practical interventions Mobile Genetic Elements (plasmids, phages, transposons) Computational Genomic Algorithms for big data analysis Synthetic Biology tools and technologies Key recent publications explore phage discovery systems , phylogenetic compression of microbial genomes, and RNA-guided gene drives in plasmids. His work is supported by multiple NIH/NIGMS and NSF grants including a MIRA award. Scientific honors include: Packard Fellowship (2018) Pew Biomedical Scholarship (2020) Sloan Research Fellowship (2020) A. Clifford Barger Excellence in Mentoring Award (2021) SSQBio Mentorship Award (2022) The lab actively trains PhD students and postdoctoral fellows with alumni occupying academic and industry positions globally. Current team members include researchers from interdisciplinary backgrounds working at the intersection of experiment, computation, and theory .

Pamela Ronaldمشاهده پروفایل

استاد

• Plant Genetics
• Crop Improvement
• Plant-Microbe Interactions
• +۳ مورد دیگر

Pamela Ronald is a Distinguished Professor of Plant Pathology at the University of California, Davis, affiliated with the Department of Plant Pathology within the College of Agricultural and Environmental Sciences. Her research focuses on understanding and enhancing crop resilience, particularly in rice, through genetic and molecular mechanisms. Key areas include plant immunity against pathogens, climate adaptation, and sustainable agricultural practices. Education and Background: Details on her academic qualifications are not explicitly mentioned in the provided text, but her career trajectory suggests advanced training in plant genetics and pathology. Research Interests: Ronald’s work centers on engineering disease-resistant crops, studying plant-microbe interactions, and developing climate-resilient varieties. Notably, she has contributed to identifying genes like XA21 that confer resistance to bacterial infections and pioneered methods to reduce methane emissions in rice. Her studies also explore the role of sulfated peptides in pathogen virulence and host defense mechanisms. Publications Trends: Her recent articles emphasize molecular mechanisms of plant immunity, genetic engineering applications, and sustainability challenges. Themes include directed evolution of immune receptors, machine learning in genotype-phenotype prediction, and mitigation of agricultural greenhouse gases. Awards and Recognition: While specific awards are not listed here, her leadership in plant genetics and advocacy for evidence-based biotechnology policies reflect significant recognition in her field. Grants and Advising: Ronald has led projects funded by agencies like the U.S. Department of Energy, focusing on bioenergy crops like switchgrass. She collaborates globally on initiatives such as the Rice Protein Tagging Project and the AI Institute for Next Generation Food Systems. Labs and Teams: She directs the Crop Genetics Innovation Lab at UC Davis, fostering interdisciplinary research in crop improvement and sustainable agriculture.

• Maize Genetics
• Plant Breeding
• Disease Resistance
• +۵ مورد دیگر

Tiffany M Jamann is an Associate Professor in Crop Sciences at the University of Illinois, where she holds the Monsanto Fellowship in Plant Breeding. Her research program focuses on understanding and improving disease resistance mechanisms in maize through integrated genetic, genomic, and phenotypic approaches. Dr. Jamann's work spans multiple disease systems with particular emphasis on foliar diseases such as Northern Leaf Blight and ear diseases like Gibberella ear rot. Her research interests include: Quantitative trait locus (QTL) mapping for disease resistance in maize Development of near-isogenic line populations for gene discovery Comparative studies of resistance mechanisms across different pathosystems Investigation of pattern-triggered immunity in maize Standardization of pathogen inoculation and disease rating methodologies Analysis of Dr. Jamann's recent publications (2023-2025) reveals a strategic integration of traditional plant breeding with cutting-edge genomic approaches. Her work demonstrates increasing use of comparative genomics and transcriptomics to identify host-specificity genes in pathogens while maintaining strong focus on practical breeding applications. A notable trend is her development of standardized methodologies for pathogen inoculation across multiple disease systems, enabling more reliable resistance evaluation. Monsanto Fellow in Plant Breeding Multiple publications featured in news outlets and academic discussions Active research with significant social media engagement (46 X users mentioning her work) Dr. Jamann's research program likely involves extensive collaboration with other plant pathologists and breeders, as evidenced by her numerous co-authored publications. Her work on multi-environment trials suggests substantial field research across different geographical locations. The development of specialized maize germplasm, including near-isogenic lines, indicates long-term investment in genetic resources for disease resistance research. Her laboratory maintains sophisticated capabilities for pathogen characterization, high-throughput phenotyping using fluorescence microscopy, and genetic mapping approaches. The emphasis on both fundamental plant-pathogen interactions and applied crop improvement demonstrates a research program that bridges basic science with practical agricultural outcomes.

• Microbiome
• Host-Microbe Interactions
• Environmental Microbiology
• +۵ مورد دیگر

Prof. Dr. Michael Schloter serves as Director of the Research Unit for Comparative Microbiome Analysis at Helmholtz Munich since 2011 and holds a Professorship in Microbiology at the Technical University of Munich since 2010. He concurrently acts as Principal Investigator at both the German Center for Lung Diseases (DZL) and the Central for Food and Nutrition (ZIEL) at TU Munich, driving interdisciplinary research at the intersection of environmental and human health through the "Planetary Health" framework. His educational foundation was built through diploma studies at Ludwig Maximilian University Munich and doctoral research at the University of Bayreuth, followed by formative work in Brazil and the United States where he pioneered bioinocula development for stress-resilient agriculture. At Helmholtz Munich (formerly GSF), he evolved from group leader in soil microbial ecology (2001) to Research Unit Director, expanding his focus from agricultural systems to human microbiome-health connections. Dr. Schloter's research program centers on microbiome-host crosstalk across ecological scales, investigating how environmental microbiota interact with human and plant microbiomes to influence health outcomes. His work integrates ecological theory with microbiome analysis to decode host-microbe co-evolution patterns, with applications spanning sustainable agriculture, allergy prevention, and infection control. Key thematic pillars include holobiont theory, probiotic development, and microbiome-mediated disease prevention through environmental quality improvement. Analysis of his 2025 publications reveals a strategic research portfolio bridging fundamental and applied microbiome science. Agricultural studies dominate (maize, potato, apple systems), examining microbial inoculants and soil management, while human health investigations explore preterm birth complications and Antarctic mammal microbiomes. Computational approaches for antimicrobial resistance assessment and ecosystem-scale projects like JenaTron demonstrate methodological breadth, all converging on translating microbiome functionality into real-world sustainability solutions. Major recognitions include: Election to the Bavarian Academy of Science (2021) Consistent placement among the top 1% of highly cited global researchers (2019-2021) Heinrich Baur Research Award (2011) for agricultural microbiology contributions As Research Unit Director, Schloter leads large-scale collaborative initiatives including the DZL and ZIEL consortia, securing major funding for microbiome standardization projects and international research networks. His leadership extends to developing analytical frameworks for cross-ecosystem microbiome comparisons and establishing protocols for translating microbial ecology principles into clinical and agricultural applications. The Comparative Microbiome Analysis unit operates as a nexus for multi-host microbiome research, employing comparative genomics, field-scale agricultural trials, and clinical cohort studies to investigate microbiome dynamics across environmental, plant, and human systems. Current infrastructure includes advanced sequencing facilities and experimental platforms for plant-microbe and host-microbe interaction studies under controlled and natural conditions.

Chiu Ping Chengمشاهده پروفایل

استاد

• Molecular Biology
• Plant-Microbe Interactions
• Bacterial Pathogenesis
• +۵ مورد دیگر

Chiu Ping Cheng is a Professor in the Department of Biology at the University of Minnesota, USA, specializing in Molecular Biology and Plant-Microbe Interactions . With over two decades of research on Ralstonia solanacearum and its interactions with solanaceous crops, Dr. Cheng has pioneered studies on plant defense mechanisms against bacterial wilt, regulatory gene functions, and biocontrol agent applications. Current research: Plant-pathogen interactions Special techniques: Genomic screening, bacteriophage-derived proteins Key pathogens: Ralstonia solanacearum, Pectobacterium carotovorum His recent publications (2024) explore tomato cultivar resistance variation , NADPH oxidase-effector interactions , and phenylpropanoid metabolism in wild mungbean . Though no formal scientific awards are listed, his work has been featured in leading journals like Plant Cell & Environment and New Phytologist . Dr. Cheng operates from the Life Science Building R942 laboratory.

Jean Van Den Elsenمشاهده پروفایل

استاد

• Structural Biochemistry
• Protein Homeostasis
• Immune Evasion Mechanisms
• +۵ مورد دیگر

Prof Jean Van Den Elsen is a Professor of Biochemistry at the University of Bath , affiliated with the Department of Life Sciences and several research centers including the Centre for Sustainable Chemical Technologies (CSCT) , Centre for Therapeutic Innovation , and Milner Centre for Evolution . They are actively accepting doctoral students and leading multidisciplinary projects at the intersection of structural biology and immunology. Education: Not explicitly mentioned Appointments: University of Bath (current), with collaborations across Chemistry, Biology & Biochemistry departments Research Focus: The laboratory investigates protein structural biology in two major areas: Complement System Interactions: Studying how pathogenic microbes like Staphylococcus aureus evade host immunity through complement system manipulation , with structural analysis of proteins such as C3d and C5 complexes. This work directly informs vaccine design and autoimmune disease treatment . Glycation Mechanisms: Developing diagnostic tools for detecting non-enzymatic sugar modifications linked to diabetes , Alzheimer's , and aging, with commercial partnerships like Abcam . Article Trends: Recent publications demonstrate: Structural analysis of complement evasion proteins (2022-2025) Engineering knob domains as miniature antibodies (2023) Evolutionary studies on cooperative behavior (2021-2025) Advancements in peptide synthesis platforms (2022-2023) Applications of AI protein folding (2020) Scientific Contributions: ORCID: 0000-0002-0367-1956 BBSRC Funding recipient (2023) 100+ citations across 76 research outputs Student Mentorship: Directly supervising 4 current PhD students and 1 postdoc, with a track record of mentoring 11 previous students including Daphne Jackson Fellows and MSCA researchers. Collaborations: Maintains active partnerships with Dr. Tony James (Chemistry), Dr. Rob Williams (Biochemistry), and industry partners UCB Celltech and Porton Biopharma Ltd. Their work contributes to UN Sustainable Development Goals 3 (Good Health), 12 (Responsible Consumption), and 13 (Climate Action).