جست‌وجوی استاد و پژوهشگر

Malte Oppermannمشاهده پروفایل

استاد

• Ultrafast spectroscopy
• Chiral dynamics
• Molecular dynamics
• +۴ مورد دیگر

Prof. Dr. Malte Oppermann is a full Professor at the University of Basel , leading the Ultrafast Chiral Dynamics Laboratory within the Department of Chemistry. His group specializes in developing cutting-edge time-resolved spectroscopic techniques to probe molecular transformations on femtosecond to microsecond timescales, focusing on chirality and structural dynamics in complex systems. Research Focus: Ultrafast Chiral Spectroscopy : Using circularly polarized laser pulses to resolve structural changes in chiral systems. Molecular Motors & Protein Dynamics : Capturing conformational changes in synthetic motors and proteins in native environments. Photoactive Materials : Investigating light-energy conversion mechanisms in chiral photochemical systems. His research bridges physics and chemistry, employing state-of-the-art laser technology and collaborating internationally across synthesis, spectroscopy, and theory. Publications & Impact: Prof. Oppermann’s work (2011–2025) spans ultrafast spectroscopy , chiral dynamics , nanomaterials , and biomolecular photophysics . Key themes include spin-crossover dynamics, DNA photodamage, and plasmonic nanoparticles, with techniques like transient X-ray absorption and deep-UV circular dichroism. Team & Opportunities: The group actively recruits MSc/PhD students and postdocs in physics, chemistry, and materials science. Interested candidates are encouraged to contact Prof. Oppermann directly.

Jeppe Lund Nielsenمشاهده پروفایل

استاد

• Microbial Ecology
• Functional Ecology
• Genomics
• +۱۰ مورد دیگر

Jeppe Lund Nielsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. His research lies at the intersection of microbial ecology, genomics, and environmental biotechnology, with a strong focus on sustainable solutions for wastewater treatment, anaerobic digestion, and environmental monitoring. His primary research interests include Microbial Ecology, Functional Ecology, Genomics, Molecular and Technical Microbiology, Anaerobic Digestion, Metagenomics, and eDNA Metabarcoding . He applies molecular tools to understand microbial community dynamics in engineered and natural systems, particularly in wastewater and marine environments. His work contributes to the UN Sustainable Development Goals related to clean water, sustainable cities, and climate action. The recent publication trends reflect a strong emphasis on environmental applications of microbiome science, including nitrogen cycling in wastewater, bioaerosol exposure in workers, eDNA-based biodiversity monitoring, and valorization of waste streams through biotechnology. His articles frequently appear in high-impact environmental and microbiological journals and demonstrate interdisciplinary collaboration across engineering, ecology, and public health. Among his notable scientific contributions are leadership roles in significant research projects such as the AAU Bubble Project (Power2Proteins), JAMBO seabed impact study, and investigations into biotechnological pesticides. He has also contributed to public discourse through media engagement on topics like pesticide regulation and environmental innovation. Professor Nielsen has supervised PhD students, including M. Eskeldsen, and is actively involved in grants and collaborative research across Europe. He is a key member of research teams focused on environmental microbiology, wastewater biotechnology, and marine impact assessments. His lab integrates molecular biology, bioinformatics, and environmental engineering to address pressing sustainability challenges.

Virginia Davisمشاهده پروفایل

استاد

• Self-assembly of nanomaterials
• Rheology
• Lyotropic liquid crystals
• +۴ مورد دیگر

Virginia Davis is the Dr. Daniel F. and Josephine Breeden Professor in the Department of Chemical Engineering at Auburn University's College of Engineering. She holds a Ph.D. in Chemical and Biomolecular Engineering from Rice University, and M.S. and B.S. degrees in Chemical Engineering from Tulane University. Research Focus: Self-assembly of nanomaterials, rheology, lyotropic liquid crystals, additive manufacturing, polymers, nanocomposites, and biosensors Key Projects: USDA-funded agricultural outreach, NSF grant for MXene dispersion studies, Alabama STEM Council member Her recent publications explore cellulose nanocrystals, MXene 3D printing, and sustainable polymer recycling. Davis has received multiple honors including the Breeden Professorship, AIChE Fellowship, and Auburn University Faculty Awards for research and mentorship. Research Trends: Dominated by bio-based nanomaterials (cellulose nanocrystals, MXenes), with applications in additive manufacturing, environmental remediation (PFAS adsorption), biosensors (carbofuran detection, cancer biomarkers), and agricultural delivery systems. Scientific Awards Auburn University Faculty Awards (2023, 2025) AIChE Fellow (2023) Dr. Daniel F. and Josephine Breeden Professorship Davis leads outreach initiatives like the Tomorrow’s Community Innovators camp and collaborates with interdisciplinary teams on plastic recycling innovations. Her work emphasizes both fundamental material science and practical applications addressing environmental and agricultural challenges.

• Livestock Systems
• Animal Breeding
• Genetics
• +۳ مورد دیگر

Matteo Bolner is a Post-Doctoral Research Fellow at the University of Bologna's Department of Agricultural and Food Sciences, specializing in livestock genomics and metabolomics. He holds a PhD in Agricultural and Food Sciences (defended March 2025) and an International Master in Bioinformatics from the University of Bologna. His research integrates genomic and metabolomic data to improve livestock sustainability, particularly in pig production systems. Key focuses include identifying metabolic pathways influencing production traits, analyzing pig viromes for disease outbreaks, and leveraging big data for One Health applications. His educational background includes a Biological Sciences degree (2018) and a bioinformatics master's (2021). He interned at CINECA's SCAI department, focusing on HPC software containerization. Current affiliations include membership in the Animal and Food Genomics group, where he explores genomic solutions for breed conservation and sustainable production. Research trends in his articles emphasize multi-omics integration to understand pig metabolism, stress responses, and breed-specific adaptations. He also applies genomics to authenticate food products and enhance conservation strategies for endangered livestock breeds like the Mora Romagnola pig. His work bridges animal science, computational biology, and agricultural sustainability. Notable contributions include developing genomic tools for honey bee population analysis and creating a catalog of mitochondrial insertions in pig genomes. Future directions involve advancing metabolomics-based precision livestock farming and applying big data analytics to livestock One Health challenges.

Vijini Mallawaarachchiمشاهده پروفایل

پژوهشگر ارشد

• Metagenomics
• Bioinformatics
• Bacteriophages
• +۳ مورد دیگر

Vijini Mallawaarachchi is a Research Fellow in Bioinformatics at Flinders University's Flinders Accelerator for Microbiome Exploration (FAME). His research focuses on developing computational methods for metagenomic analysis, particularly viral genome recovery from metagenomes. He holds a PhD in Computer Science from the Australian National University (2022) and a BSc in Computer Science and Engineering (Honours) from the University of Moratuwa, Sri Lanka (2018). Education: Doctor of Philosophy (Computer Science), Australian National University, 2018–2022 Bachelor of Science (Computer Science & Engineering, Honours), University of Moratuwa, 2014–2018 Research Interests: Metagenomics, algorithms for genome recovery, bacteriophage discovery, machine learning applications in bioinformatics, and software engineering for computational biology. His work emphasizes leveraging assembly graphs and computational models to analyze microbial communities and viral genomes. Grants & Awards: 2025: National Computational Merit Allocation Scheme Grant (Co-CI) - A$412,000 2025: ARC Discovery Projects Grant (Co-CI) - A$685,781 2024: Outstanding PhD Thesis Award (ABACBS) 2023: Australian Society for Microbiology Early Career Award Professional Engagement: Active member of ISMB, ISVM, ACM, IEEE, ABACBS, ASM, and RSE AU/NZ. Supervises HDR and Honours students in bioinformatics and computational biology. Labs & Tools: Leads projects at FAME, developed tools like GraphBin, Phables, and ConDiGA for metagenomic analysis. Collaborates on open-source initiatives like the cogent3 Python APIs.

• Cancer Biology
• Genome Editing
• Molecular Biology
• +۳ مورد دیگر

Wen Xue is a Professor at UMass Chan Medical School, affiliated with the RNA Therapeutics Institute within the T.H. Chan School of Medicine. She holds multiple additional roles across departments such as the Program in Molecular Medicine, Cancer Biology, and Biochemistry and Molecular Biotechnology at the Morningside Graduate School of Biomedical Sciences. Her research focuses on developing genetic models for liver and lung cancer using CRISPR/Cas9 and RNAi tools. Key areas include CRISPR-mediated genome editing for cancer gene discovery, KRAS inhibition mechanisms, and miRNA networks in lung cancer. She has secured grants from NIH, American Cancer Society, and others. Awards include the NIH Director’s New Innovator Award and Lung Cancer Research Foundation grants. Her lab actively recruits postdoctoral researchers and offers rotation projects in CRISPR technology and cancer biology. Education: B.S. and M.S. in Biochemistry from Nanjing University; Ph.D. in Biochemistry from State University of New York, Stony Brook. Research Interests: Wen Xue’s lab employs CRISPR tools to accelerate cancer gene validation and therapeutic target identification. Projects include: CRISPR-based liver cancer gene correction and oncogene deletion studies. Investigating KRAS inhibition resistance via RNAi and CRISPR in lung cancer models. Characterizing miRNA networks using TCGA data to identify therapeutic miRNA candidates. Her work bridges functional genomics with precision medicine, emphasizing in vivo and in vitro platforms. Publications: Over 100 peer-reviewed articles, including high-impact studies on CRISPR applications in gene therapy and cancer modeling. Recent work explores prime editing, base editing, and viral/non-viral delivery systems for lung diseases. Grants & Awards: NIH grants (P01HL131471, DP2HL137167), American Cancer Society (RSG-16-093), and industry partnerships like the Cystic Fibrosis Foundation. Collaborations include projects on CFTR mutation repair and AAV vector development. Labs/Teams: Xue Lab focuses on cancer genetics and gene editing, with interdisciplinary collaborations in molecular medicine and bioengineering. Ongoing projects aim to translate CRISPR-based therapies into clinical applications.

• Microbiology
• Marine Biology
• Environmental Science
• +۳ مورد دیگر

Detmer Sipkema is an Associate Professor at Wageningen University & Research, affiliated with the VLAG WIMEK faculty and the Department of Molecular Ecology. His research focuses on microbial ecology, marine biology, and biotechnology, particularly in aquaculture systems and sponge symbionts. He leads projects on metabolic modeling of marine bacteria, ecological impacts of seaweed farming, and probiotics development for aquaculture. Key research interests include microbial diversity, anaerobic digestion in aquaculture waste, and applications of artificial intelligence in microbial studies. He has supervised multiple PhD candidates exploring topics like microbial symbiosis, gut microbiota dynamics, and sustainable aquaculture practices. His work integrates multi-omics approaches, environmental microbiology, and bioprospecting for novel bioactive compounds. Sipkema has published widely on sponge microbiomes, anaerobic processes, and aquaculture sustainability. His datasets include bacterial community analyses from sponges and microalgae, contributing to understanding symbiotic relationships and biotechnological applications.

Jenn Brophyمشاهده پروفایل

استادیار

• Genetic Engineering
• Plant Science
• Synthetic Biology
• +۳ مورد دیگر

Jenn Brophy is an Assistant Professor of Bioengineering at Stanford University, developing technologies for genetic engineering of plants and microbes to address environmental stress resilience and agricultural sustainability. Her lab focuses on synthetic genetic circuits for plant root reprogramming and stress response optimization. B.S. in Bioengineering, UC Berkeley (2010) Ph.D. in Biological Engineering, MIT (2016) Postdoctoral Fellow, Stanford University (Biology) Research spans synthetic biology, plant genetics, and microbiome engineering, emphasizing climate adaptation and sustainable biotechnology. Current projects include: Plant-microbe interaction engineering Stress-responsive biosensors High-throughput genetic tool development Plant cell atlas integration Sustainable laboratory practices Her recent publications highlight advances in recombinase circuits, root architecture engineering, and plant cell mapping, with applications in climate resilience and microbiome design. Collaborators include José Dinneny (Stanford) in plant synthetic biology research.

Stephen Leveneمشاهده پروفایل

استاد

• DNA topology
• protein-DNA interactions
• nucleic acid structure
• +۵ مورد دیگر

Stephen Levene is a Professor of Bioengineering at The University of Texas at Dallas (UT Dallas), affiliated with the Erik Jonsson School of Engineering and Computer Science. His research focuses on the physical and functional genomics of DNA structure, protein-DNA interactions, and DNA topology in biological systems. He holds a PhD from Yale University (1985) and an AB from Columbia University (1979). Levene’s laboratory investigates genome organization, chromatin dynamics, and the role of circular DNA (eccDNA) in health and disease. His work employs advanced biophysical techniques, including hydroxyl radical probing, gel electrophoresis, and single-molecule analysis. Key areas include DNA supercoiling, topoisomerase function, and the interplay between DNA structure and cellular processes. His research has led to innovations in DNA topology simplification, Cre recombination kinetics, and methodologies for analyzing circular DNA populations in organisms like C. elegans and humans. Levene’s lab also develops tools for genomic studies, such as shallow-learning models for DNA fragmentation analysis and unmasking hidden topological activities in recombination systems. Levene’s contributions span over 40 years, with publications addressing DNA looping, knotting, and the thermodynamics of nucleoprotein assemblies. His work bridges biophysics, molecular biology, and engineering, emphasizing interdisciplinary approaches to genomic challenges.

Janie McClurkin Mooreمشاهده پروفایل

استادیار

• Post-harvest treatment technologies
• Bioprocess engineering
• Biomass valorization
• +۸ مورد دیگر

Dr. Janie McClurkin Moore is an Assistant Professor in the Department of Biological and Agricultural Engineering at Texas A&M University, part of the College of Agriculture & Life Sciences. Her research focuses on post-harvest technologies, food safety, and innovative engineering education strategies. She holds a PhD in Agricultural and Biological Engineering from Purdue University and has extensive expertise in applying cold plasma technology to agricultural challenges. Education: B.S., Bio-Environmental Engineering, North Carolina A&T State University (2006) M.S.A.B.E., Agricultural and Biological Engineering, Purdue University (2009) Ph.D., Agricultural and Biological Engineering, Purdue University (2015) Research interests span post-harvest treatment innovations, biomass valorization, and educational methodologies. Her work emphasizes non-thermal plasma applications for food safety, mycotoxin mitigation, and sustainable agriculture practices. Publications reveal a strong focus on plasma technology for pest control, food preservation, and hydroponic systems. Her engineering education research explores inclusive pedagogy and curriculum development in diverse educational settings. Advising and grants include contributions to the NSF Convergence Accelerator project addressing food security in extreme environments. She is affiliated with Texas A&M AgriLife Research, advancing applied agricultural solutions through interdisciplinary collaboration.

Martin Peiferمشاهده پروفایل

استاد

• Computational Cancer Genomics
• Tumor Evolution
• Genome Instability
• +۵ مورد دیگر

Professor Martin Peifer is a computational cancer genomics researcher at the University of Cologne, where he leads the Department of Translational Genomics. He serves as Principal Investigator of the Peifer Lab, which focuses on developing computational methods to analyze cancer genome sequencing data. His work is deeply integrated with the Center for Data and Simulation Science and he is an active member of the International Cancer Genome Consortium and the Pan-Cancer Analysis of Whole Genomes project. Peifer's research interests center on computational approaches to understanding cancer biology, with particular emphasis on tumor evolution and genome instability mechanisms. His lab develops methods to analyze somatic genome alterations including point mutations, copy number changes, and rearrangements. They also create computational tools for integrative genome analyses, tumor evolution reconstruction, and single-cell sequencing data analysis (both RNA and DNA). His interdisciplinary team applies high-performance computing and machine learning to interpret complex cancer sequencing data, aiming to better understand tumorigenesis, clonal evolution, and therapy resistance. Analysis of Peifer's extensive publication record reveals a strong focus on neuroblastoma and lung cancer genomics, with particular attention to tumor evolution patterns and genomic instability mechanisms. His work spans multiple cancer types but maintains consistent themes of computational methodology development and application to understand cancer progression and treatment resistance. The publications demonstrate increasing sophistication in analyzing intra-tumor heterogeneity and clonal dynamics over time. Peifer leads an active research group including postdoctoral fellows (Joel Kaufmann, Dr. Stephanie Pabel, Agnieszka Rumińska) and PhD students (Magdalena Seiffert, Justinas Valiulis). His lab is involved in the Collaborative Research Center 1399 focused on Mechanisms of Drug Sensitivity and Resistance in Small Cell Lung Cancer, indicating significant grant funding and collaborative research efforts. The Peifer Lab operates at the intersection of computational biology and cancer research, maintaining an interdisciplinary approach that combines bioinformatics, machine learning, and high-performance computing to address complex questions in cancer genomics. Their work has significant implications for understanding cancer evolution and developing more effective treatment strategies.

Christopher S. Sullivanمشاهده پروفایل

استاد

• Virology
• Non-coding RNA Biology
• RNA Interference
• +۵ مورد دیگر

Christopher S. Sullivan is a Professor in the Department of Molecular Biosciences within the College of Natural Sciences at the University of Texas at Austin. He directs an active research laboratory focused on viral non-coding RNA biology and host-pathogen interactions, with continuous funding evidenced by publications spanning 2005-2025. His work bridges molecular virology, immunology, and RNA biology through investigations of tumor viruses and host defense mechanisms. Research interests center on the role of non-coding RNAs in viral infection and host defense pathways, with particular emphasis on viral microRNAs , RNA interference mechanisms , and host-pathogen coevolution . His lab studies diverse virus families including Polyomaviridae, Herpesviridae, Retroviridae, and avipoxviruses, with key discoveries regarding viral miRNA functions in tumorigenesis and immune evasion. Research approaches integrate molecular virology, next-generation sequencing, and computational analysis to dissect RNA-based regulatory networks. Publications reveal consistent focus on viral non-coding RNA functions, particularly how viruses exploit host RNA machinery (notably DUSP11 phosphatase) to modulate immune responses. Recent work (2021-2025) expands into viral shedding dynamics, SARS-CoV-2 diagnostics, and circular RNA biology in polyomaviruses, demonstrating evolving yet cohesive research trajectory in RNA-virus interactions. Scientific contributions include: Pioneering identification of viral microRNAs across multiple virus families Discovery of DUSP11's critical role in RNA triphosphate regulation during infection Mechanistic insights into viral evasion of RNAi and innate immunity Development of novel RNA-based detection methods The Sullivan lab maintains active collaborations through the Center for Systems and Synthetic Biology, John Ring LaMontagne Center for Infectious Disease, and Interdisciplinary Life Sciences Graduate Programs. Lab culture emphasizes collective scientific inquiry with stated mission to 'increase understanding of pathogen-host interactions while enjoying the company of fellow lab members.' Current research directions include viral exploitation of RNA modification pathways and identification of novel host defense mechanisms using viruses as 'molecular divining rods.'

• Cancer Nanotechnology
• Nanomedicine
• Gene Engineering
• +۷ مورد دیگر

Wei Deng is an Associate Professor and Deputy Head of School (Research) in the School of Biomedical Engineering at the University of Technology Sydney (UTS). Her research focuses on cancer nanotechnology, nanobiotechnology, and gene engineering, with significant contributions to radiation-activated chemotherapy (RAC) via liposomes and CRISPR-based therapies. She has pioneered treatments for rectal and breast cancers, including the development of patented RAC systems that reduce chemotherapy toxicity. Her work has led to the founding of biotech startup EosGene Pty Ltd for diabetic retinopathy therapies. Deng holds a PhD from Macquarie University and has attracted over $3.7M in grants from ARC, NHMRC, and Cancer Institute NSW. She leads interdisciplinary teams and contributes to global collaborations, including partnerships with UNSW and HK Winhealth Pharma Group. Her research spans drug/gene delivery systems, CRISPR biosensors, and nanoparticle engineering, emphasizing translational medicine and industrial challenges. Education: PhD in Biomedical Engineering, Macquarie University (Sydney) Leadership Roles: Deputy Head of School, Research; Co-founder of EosGene Pty Ltd Awards: DECRA Fellowship (ARC), Cancer Institute NSW Career Development Fellowship Key Projects: RAC liposomes (Patents US 12036282, Europe 3720422), CRISPR-based pathogen sensors, X-ray triggered PDT platforms Her research bridges nanotechnology and clinical applications, with 62 refereed publications (h-index 26) and 87% in top-tier journals. She actively supervises postgraduate research in CRISPR therapies, CAR T cell engineering, and targeted drug delivery.

Jeremy Baumbergمشاهده پروفایل

استاد

• Nanoscience
• Nanotechnology
• Nanophotonics
• +۶ مورد دیگر

Jeremy Baumberg is a Professor at the Cavendish Laboratory, University of Cambridge, leading research in nanoscience and nanotechnology. He specializes in designing nano-materials with unique optical properties, including plasmonic cavities and polymer opals, with applications in catalysis, sensing, and energy. His work bridges academia and industry through collaborations with Hitachi, IBM, and his spin-offs Mesophotonics and Base4. Research interests focus on light-matter interaction in nanoscale systems, quantum plasmonics, surface-enhanced Raman spectroscopy (SERS), and nanocavity engineering. Recent projects include developing plasmonic nanogap reactors, high-energy-density battery materials, and the open-source WaterScope platform for water quality monitoring. Awards : Faraday Medal (2017) Rumford Medal (2014) Young Medal (2013) Royal Society Fellowship (2011) Mullard Prize (2005) His lab, the Ray Dolby Centre, explores optomechanical systems, plasmonic sensors, and nanostructured materials. Baumberg advises ARIA and serves on the EPSRC Council, emphasizing interdisciplinary innovation and scalable nanotechnology solutions.

• Neuroscience
• Neurology
• Molecular Biology
• +۳ مورد دیگر

Dr. Hannah Lowes is a researcher at Newcastle University , specializing in neuroscience and neurodegenerative diseases. Her work focuses on molecular mechanisms in Parkinson's disease, particularly mitochondrial DNA dynamics, circular RNA expression, and biomarker discovery. Research Interests : Neurogenomics, neuroinflammation, and molecular pathology of Parkinson's disease Key Collaborations : Professor Gavin Hudson, Dr. Angela Pyle, Dr. Marzena Kurzawa-Akanbi Recent publication trends include studies on circulating cell-free mitochondrial DNA (2020), post-mortem cerebrospinal fluid analysis (2020), and cross-disciplinary links between viral receptors and neurodegeneration (2020). Her 2024 work on circular RNA expression in early-stage Parkinson's disease reflects ongoing innovation in biomarker research.