Sushmita Roy is a Professor at the University of Wisconsin–Madison, affiliated with the Department of Computer Sciences and the College of Letters and Science. Her research focuses on developing computational methods in statistical machine learning to understand gene regulatory networks in living cells, particularly under environmental, developmental, disease, and evolutionary contexts. She explores bulk and single-cell genomic data integration to study processes like cell fate specification, host-microbe interactions, and diseases such as cancer and neurodevelopmental disorders. Her work emphasizes three key areas: inference of genome-scale transcriptional networks, evolutionary analysis of regulatory networks, and 3D genome organization dynamics. Roy’s lab collaborates across disciplines, leveraging genomic data from plant and mammalian systems. She has contributed to methodologies for analyzing chromatin accessibility, single-cell profiling, and network-based models of pathogen systems. Her affiliations include Wisconsin Institutes for Discovery, and she is a leader in computational biology and systems genomics research.
Farnoush Banaei-Kashani is an Associate Professor (Tenured) in the Department of Computer Science and Engineering at the University of Colorado Denver. She also holds an Adjunct Associate Professor position in the Department of Mathematical and Statistical Sciences. As the founder and director of the Big Data Management and Mining Lab (BDLab), she leads multiple GAANN Fellowship Programs, including BDSE (Big Data Science and Engineering), DDC (Data-Driven Cybersecurity), and II (Infrastructure Informatics). She directs the 'Data Science in Biomedicine' MS Track and focuses on data-driven decision systems (DDSs), integrating machine learning and big data analytics into healthcare, energy, transportation, and environmental applications. Education: Details not explicitly provided in the text. Her research spans data management cycles for DDSs, addressing challenges like big data volume, velocity, and variety. Key projects include iWatch (crime surveillance), POCM (mobility monitoring), and GeoSIM (urban texture documentation). She teaches courses such as Machine Learning Systems, Big Data Science, and Data Mining. Publications highlight advancements in sea ice classification, federated learning, proteomic networks, and privacy-preserving AI. Her work is funded by NSF, NIH, DOT, and industry partners like Google and IBM. She has advised numerous students and contributes to academic leadership as editor, conference chair (ACM SIGSPATIAL 2018/2019), and program committee member for venues like SIGMOD and KDD.
Réka Albert is a Distinguished Professor of Physics at Pennsylvania State University, affiliated with the Eberly College of Science. Her research focuses on the application of network science to biological systems, including signal transduction networks, ecological interactions, and cancer systems biology. She holds editorial roles at npj Systems Biology and Applications , IET Systems Biology , and Bulletin of Mathematical Biology . Education: Ph.D. in Physics from the University of Notre Dame (2001), M.S. and B.S. from Babeș-Bolyai University, Romania (1995-1996). Research Interests: Modeling complex systems using network theory; Boolean network analysis of biological pathways; ecological community dynamics; systems-level understanding of disease mechanisms (e.g., cancer, AML). Her work bridges theoretical physics, computational biology, and experimental data to predict system behavior and therapeutic strategies. Awards: External member of the Hungarian Academy of Sciences (2016), APS Maria Goeppert-Mayer Award (2011), NSF CAREER Award (2007), and Alfred P. Sloan Fellowship (2004). Grants/Support: NSF awards (MCB 1715826, IIS 1814405), ARO MURI on hyperuniform systems, and collaborations with biologists like Sarah Assmann (plant signaling) and Katriona Shea (ecology). Labs/Teams: Leads a multidisciplinary research group at Penn State, mentoring over 20 PhD alumni and current students like Eli Newby and Fatemeh Nasrollahi. Active in developing tools like pystablemotifs for Boolean network analysis.
Benjamin Machta is an Assistant Professor of Physics at Yale University, affiliated with the Department of Physics and the QBio Institute. He holds a BS from Brown University and a PhD from Cornell University, followed by a postdoctoral fellowship at Princeton University. His research focuses on applying theoretical physics to understand biological systems, particularly leveraging statistical physics and information theory to study biological membranes near critical points and the energetic constraints of biological signaling. Education: BS in Physics (Brown University), PhD in Physics (Cornell University), Postdoc at Princeton University (Lewis-Sigler Theory Fellow). Research Interests include: membrane criticality, phase transitions in biological systems, information-theoretic limits in organism function, and energy dissipation in biological processes. His work often bridges theoretical models with experimental data, such as collaborations with Sarah Veatch’s lab on membrane phase behavior. Publications highlight themes like membrane criticality, protein phase separation, and energy constraints in signaling. His group’s current projects explore cochlear mechanics, thermodynamic control in biological systems, and the role of criticality in sensory systems. Awards: 2019 Simons Investigator Award. Lab Affiliations: QBio Institute and Department of Physics at Yale, located in YSB-C164. Group members include postdocs Isabella Graf and Michael Abbott, and graduate students Asheesh Momi, Mason Rouches, and others.
Ilker Yildirim is an Assistant Professor of Psychology at Yale University, where he leads the Cognitive and Neural Computation Lab (CNCL). He received his Ph.D. from the University of Rochester in 2014. His research focuses on understanding how perception transforms raw sensory signals into meaningful representations of objects and scenes through computational modeling approaches. His research interests include: Computational modeling of visual perception and cognition Intuitive physics and physical reasoning Bayesian inference and probabilistic models in cognition Integration of graphics and physics engines in cognitive modeling Neural mechanisms of object representation Attention and resource allocation in dynamic scenes Yildirim's lab develops computational frameworks that bridge cognitive processes with neural mechanisms, using tools including probabilistic models, simulation engines, and deep learning. His work often involves testing these models through behavioral and neural experiments to create unified accounts of perception and cognition. His recent publications reveal a strong focus on how humans perceive physical properties of objects, particularly soft materials and liquids, and how attention dynamically allocates resources during scene perception. Among his notable achievements is receiving an NSF CAREER award for his project "CAREER: CompCog: Reverse-engineering neural mechanisms of object cognition with multilevel computational modeling," which will run from 2025 to 2030. His Nature Human Behaviour paper by Qi Lin was featured on CBS News, Germany's NZZ, and Wired Italy. Yildirim mentors a diverse group of graduate students and postdocs working on various aspects of perception, cognition, and computational modeling. His students have received prestigious awards including the Jane Olejarczyk Award and the Leonard J. Savage Prize.
Karoline Faust is an Associate Professor at KU Leuven, affiliated with the Laboratory of Molecular Bacteriology (Rega Institute) and the Faculty of Medicine . She contributes to the iSi Health and Leuven One Health institutes, and serves on senior academic councils. Her research spans microbial systems biology, focusing on community dynamics and network analysis. Education: PhD in bioinformatics (2010, KU Leuven) Affiliations: KU Leuven, ISME Journal editorial board, Belgian Society for Microbiology Her research investigates microbial community dynamics , systems biology approaches to microbiomes, and bioinformatics tool development . She specializes in modeling human gut microbiota , synthetic microbial communities , and environmental microbiomes (e.g., microplastic impacts on Daphnia microbiomes). Her work integrates metabolic modeling , network analysis , and experimental systems to understand microbial interactions. Recent publications highlight her contributions to microbial network inference , 16S rRNA sequencing protocols , microfluidics , and ecological modeling of microbiomes. She develops tools like manta , miaSim , and CoNet to analyze community structures. Teaching: Karoline co-teaches courses in microbiology, bioinformatics, and network analysis at KU Leuven, and has contributed to international workshops on microbial network inference. Scientific Engagement: She serves as Senior Editor at ISME Journal and Secretary of the Belgian Society for Microbiology .
Rex Ying is an Assistant Professor in the Department of Computer Science at Yale University's School of Engineering & Applied Science. He leads research in graph neural networks, geometric representation learning, and explainable AI, with applications spanning physical simulations, biology, knowledge graphs, and recommender systems. His lab actively recruits PhD students interested in geometric deep learning, graph neural networks, and trustworthy AI. Dr. Ying received his PhD in Computer Science from Stanford University under Jure Leskovec, with a thesis titled "Towards Expressive and Scalable Deep Representation Learning for Graphs." Prior to that, he graduated from Duke University in 2016 with highest distinction, majoring in Computer Science and Mathematics. His research focuses on three interconnected areas: advancing graph neural network architectures for improved expressiveness, scalability, and interpretability; innovating in geometric representation learning for data with diverse characteristics; and developing real-world applications across scientific domains. He has pioneered influential algorithms including GraphSAGE, PinSAGE, and GNNExplainer, and developed the first billion-scale graph embedding services at Pinterest as well as graph-based anomaly detection algorithms at Amazon. His recent publication trends show a strong focus on hyperbolic geometry for foundation models, non-Euclidean representation learning, and multimodal applications in computational biology. The research demonstrates increasing integration of geometric deep learning with large language models and foundation model architectures. KDD 2022 Dissertation Award 2019 Baidu Scholarship in Artificial Intelligence Dr. Ying actively serves the research community as a committee member for major conferences including AAAI, ICML, NeurIPS, ICLR, KDD, and WebConf for over seven years, and as area chair for LoG 2022. He co-leads the open-source PyTorch Geometric project and has organized numerous workshops on graph learning. His industry collaborations include Pinterest, Amazon, Facebook AI Research, DeepMind, Siemens, SLAC National Accelerator Laboratory, and Saudi Aramco. He teaches "Deep Learning for Graph-Structured Data" at Yale and mentors students in developing cutting-edge graph learning algorithms. His research lab collaborates with both academic institutions and industry partners to advance the state-of-the-art in graph representation learning, with particular emphasis on geometric deep learning and its applications to scientific discovery and real-world systems.
Assoc Prof Ng Teng Yong is an Associate Professor at the School of Mechanical & Aerospace Engineering (NTU), specializing in numerical modeling and simulation. With a background as Research Manager at A*STAR Institute of High Performance Computing, his work spans materials science, nanotechnology, and aerospace engineering. Current focus on graphene-based desalination membranes Expertise in molecular dynamics simulations Investigates nanoscale fluid mechanics and structural dynamics Recent publications highlight advancements in energy-efficient electrodialysis, smart robotics, and nonlinear vibration analysis. His interdisciplinary approach integrates computational methods with experimental validation in additive manufacturing and soft material mechanics.
Soheil Salehi is a tenure-track Assistant Professor in the Department of Electrical and Computer Engineering at the University of Arizona, with a joint appointment in Systems and Industrial Engineering. He is the Director of the Privacy-preserving, Intelligent, and Secure Computing (PRISM) Lab, established in August 2022. Prior to this, he was an NSF-Sponsored Computing Innovation Fellow and Postdoctoral Research Fellow at the University of California, Davis. Ph.D., Electrical and Computer Engineering, University of Central Florida, 2020 M.S., Electrical and Computer Engineering, University of Central Florida, 2016 B.S., Isfahan University of Technology, Iran, 2014 Dr. Salehi's research focuses on the intersection of hardware, AI, and security. His work spans hardware and AI-enabled security in IoT , Generative AI for hardware design and security , neuromorphic and biologically-inspired AI hardware , emerging spin-based devices , reconfigurable architectures , low-power VLSI circuits , and digital twins and mixed reality for semiconductor workforce development . He also explores the application of Generative AI in personalized education . His recent publications, spanning 2023–2025, reveal a strong trend toward integrating AI and machine learning into hardware security and design. Key themes include automated secure IC design flows , AI-driven hardware obfuscation , firmware and side-channel attack analysis , security in neuromorphic and spiking neural networks , and educational frameworks using digital twins and generative models . His work appears in top venues like DAC, ICCAD, USENIX Security, IEEE TCAS-I, and ISCAS. Outstanding Reviewer Award, IEEE/ACM Design Automation Conference (DAC), 2023 Best Presentation of the Symposium Award, UC Davis Postdoctoral Research Symposium, 2021 UCF Excellence by a Graduate Teaching Assistant (University-Level), 2016 Nominated for 30-under-30 Award, UCF, 2020 Nominated for Postdoctoral Research Excellence Award, UC Davis, 2022 Dr. Salehi has secured significant research funding as PI and Co-PI, including a $300K NSF SaTC EAGER grant on Generative AI-based Personalized Cybersecurity Tutor, a $174,000 University of Arizona PIF Award, and multiple RII grants totaling over $198K. He has also received industry funding from CHEST. He actively mentors students and leads the PRISM Lab, which focuses on privacy-preserving and intelligent secure computing. His service includes roles as Technical Program Committee (TPC) Member and Session Chair at premier conferences such as DAC, ICCAD, CCS, NDSS, and GLSVLSI. The PRISM Lab, under his direction, conducts cutting-edge research in secure and intelligent hardware systems, with applications in IoT, edge computing, and workforce development. The lab emphasizes interdisciplinary collaboration and innovation in both research and education.
Alfred O. Hero, III is the John H. Holland Distinguished University Professor of Electrical Engineering and Computer Science and the R. Jamison and Betty Williams Professor of Engineering at the University of Michigan, Ann Arbor. He is currently on leave from the University of Michigan as a Program Director in the CISE Directorate at the National Science Foundation. His primary appointment is in the Department of Electrical Engineering and Computer Science (EECS), with secondary appointments in the Department of Biomedical Engineering and the Department of Statistics. He is also affiliated with the UM Center for Computational Medicine and Bioinformatics (CCMB), the UM Graduate Program in Applied and Interdisciplinary Mathematics (AIM), the UM Applied Physics Program, and the Michigan Institute for Data Science (MIDAS), which he co-founded from 2015-2018. Hero's research focuses on data science, developing theory and algorithms for multimodality data collection, fusion, analysis and visualization that use statistical machine learning and distributed optimization. His work has applications in wearable technologies for personalized health and predictive medicine, spatio-temporal networks in biology, climate, and social discourse, anomaly detection, and data analysis for international security. His recent research interests include high dimensional spatio-temporal data analysis, multimodal data integration, statistical signal processing, and machine learning, with particular emphasis on predictive mathematical models for biological and physical sciences, social networks, network security and forensics, and personalized health and disease. His recent publications demonstrate a strong focus on high-dimensional statistical methods, contrastive learning, neural network optimization, change detection in temporal graphs, and applications in microbiome analysis and epidemic modeling. The research spans theoretical foundations in information theory and statistical learning while addressing practical applications across multiple domains. Scientific Awards: IEEE Signal Processing Society Best Paper Award (1998) Best Original Paper Award from Journal of Flow Cytometry (2008) Best Magazine Paper Award from IEEE Signal Processing Society (2010) SPIE Best Student Paper Award (2011) IEEE ICASSP Best Student Paper Award (2011) IEEE Signal Processing Society Technical Achievement Award (2014) IEEE Signal Processing Society Society Award (2015) IEEE Fourier Award (2020) University of Michigan Distinguished Faculty Achievement Award (2011) Hero has advised over 60 PhD students and 30 postdocs in areas including modeling, computation, and inference for large scale time varying data in the biosciences. He has received significant research funding from the Department of Energy, Army Research Office, Air Force Office of Scientific Research, and National Science Foundation. He has held leadership positions including President of the IEEE Signal Processing Society (2006-2007), Director of Division IX (Signals and Applications) on the IEEE Board of Directors (2009-2011), and Chair of the Committee on Applied and Theoretical Statistics of the US National Academies (2018-2020).
Michael U. Gutmann is a Senior Lecturer in Machine Learning at the School of Informatics, University of Edinburgh, and a member of the Institute for Adaptive and Neural Computation. His research lies at the intersection of machine learning, statistics, and scientific applications, with a focus on developing inference methods for complex and implicit models. Education: PhD in Computational Neuroscience, University of Tokyo MSc in Engineering and Applied Mathematics, Swiss Federal Institute of Technology (ETH) Zurich MSc, Ecole Centrale Paris His primary research interests include Bayesian inference, likelihood-free inference, optimal experimental design, unsupervised learning, and applications in computational biology and neuroscience. He is best known for introducing Noise-Contrastive Estimation (NCE), a foundational technique for training unnormalized statistical models. His recent work spans variational inference, density ratio estimation, flow models for missing data, and AI-driven experimental design in behavioral and biological sciences. His publications, including in NeurIPS , ICML , JMLR , and eLife , demonstrate a strong emphasis on methodological innovation for scientific discovery. He has contributed to open-source tools such as ELFI (Engine for Likelihood-Free Inference) and developed practical implementations of robust inference algorithms. Scientific Awards: No specific awards listed in the provided texts. Michael Gutmann actively supervises students and collaborates with leading researchers in machine learning and computational biology. He has secured research funding from EPSRC and BBSRC for projects in generative modeling and infectious disease epidemiology. He teaches advanced courses such as Probabilistic Modelling and Reasoning and Data Mining, reflecting his deep engagement with both theoretical and applied aspects of machine learning. Labs and Research Groups: Institute for Adaptive and Neural Computation (ANC), University of Edinburgh Former affiliations with Department of Mathematics and Statistics and Department of Computer Science at the University of Helsinki and Aalto University
Stefano Fusi is an Associate Professor of Neuroscience at Columbia University's Vagelos College of Physicians and Surgeons, with joint affiliations at the Mortimer B. Zuckerman Mind Brain Behavior Institute and Kavli Institute. His laboratory focuses on computational modeling of neural circuits and neuromorphic engineering. Education PhD in Physics, Hebrew University of Jerusalem (1999) BS in Physics, Sapienza University of Rome (1992) Research Focus Fusi investigates how biological complexity supports neural computation through three primary domains: theoretical analysis of neural circuit dynamics, representational geometry in learning systems, and hardware implementations of brain-inspired algorithms. His work bridges machine learning, neurophysiology, and theoretical physics, emphasizing high-dimensional representations and memory optimization. Recent publications demonstrate consistent focus on neural coding principles across hippocampus, prefrontal cortex, and sensory systems, with innovations in modeling working memory, stress responses, and cross-species computational paradigms. Collaborations & Labs Leads an interdisciplinary laboratory collaborating with Columbia experimental neuroscientists, MIT engineers, and Stanford computational researchers to validate theoretical models. Current projects include neuromorphic hardware development and neural decoding of emotional states.
Yasushi Sakurai is a Professor in the Department of Translational Datability at Osaka University's Institute of Scientific and Industrial Research, co-leading the Sakurai and Matsubara Laboratory within the Center for Industrial Science and AI. His research mission focuses on transforming society through real-time prediction of natural and social phenomena using large-scale data analytics, with emphasis on practical technological implementation. His research spans time-series big data analysis, dynamic learning systems, and real-time information provision. Key areas include tensor stream mining, EEG-based healthcare applications, cybersecurity anomaly detection, and multi-omics cancer subtyping. The lab specializes in developing deployable technologies that optimize social activities through predictive modeling of evolving data streams. Recent publications (2023-2025) reveal concentrated innovation in time-series data stream processing, with dominant themes in tensor analytics, frequency-domain forecasting, and causal modeling. His team produces high-impact work accepted at premier AI venues (ICLR, AAAI, KDD, WWW), consistently featuring oral presentations that highlight technical novelty and societal relevance. Scientific Awards: FY2024 Minister of Education, Culture, Sports, Science and Technology Award for Science and Technology (Research Category) for dynamic learning and real-time data stream analysis Professor Sakurai mentors graduate students including Naoki Chihara (DEIM2024 Outstanding Paper Award winner), Yuka Tamura (DEIM2024 Student Presentation Award winner), and Ren Fujiwara. His lab maintains active industry-academia partnerships focused on practical technology deployment, with research directly addressing real-world challenges in healthcare monitoring and cybersecurity. The Sakurai and Matsubara Laboratory operates as a dynamic research unit within Osaka University's Center for Industrial Science and AI, structured around specialized teams for tensor stream analysis, medical data mining, and network dynamics. Current projects emphasize real-time prediction systems with immediate societal applications, supported by strong industry collaboration frameworks.
Markus Heinonen is an Academy Research Fellow at Aalto University's Department of Computer Science within the School of Science. His academic position is tied to Harri Lähdesmäki's Professorship, focusing on probabilistic machine learning. He holds a Doctoral degree in Engineering and Technology from the University of Helsinki (2013). His research integrates probabilistic modeling , deep learning , and differential equations , with applications in computational biology, drug discovery, and biophysics. Key themes include Gaussian processes, Bayesian inference, generative models, and their use in understanding complex biological systems like immune cell behavior (e.g., T cell receptor analysis in aplastic anemia) and molecular design. He leads major projects such as the Deep Learning with Differential Equations initiative (2020–2025), exploring continuous-time models and physics-informed neural networks. His work bridges theory and application, evidenced by collaborations in diffusion models , optimal transport , and single-cell analysis . Publications span over 65 peer-reviewed outputs, with recent emphases on robust neural network training, multi-target molecular prediction, and interpretable drug design frameworks. His research contributes to UN Sustainable Development Goal 3 (Good Health) through advancements in disease modeling and therapeutic development. He has undertaken visiting research roles at the University of California, San Francisco (2017) and Telecom ParisTech (2013–2014). Media highlights include recognition for work on TCR-epitope prediction and AI-driven enzyme engineering.
Surya Ganguli is an Associate Professor in the Department of Applied Physics at Stanford University, with courtesy appointments in Neurobiology and Electrical Engineering. He serves as Senior Fellow at the Stanford Institute for Human-Centered AI and is affiliated with the Stanford Neuroscience Institute , Bio-X , and Wu Tsai Neurosciences Institute . His research spans theoretical neuroscience, machine learning, and statistical mechanics. Ph.D. , UC Berkeley, Theoretical Physics (2004) M.A. , UC Berkeley, Physics (2000) M.A. , UC Berkeley, Mathematics (2004) M.Eng. , MIT, Electrical Engineering and Computer Science (1998) B.S. , MIT, Physics (1998) B.S. , MIT, Mathematics (1998) B.S. , MIT, Electrical Engineering and Computer Science (1998) His lab explores how higher-level cognitive phenomena emerge from neural network dynamics, focusing on perception, memory, attention, and decision-making . Research themes include statistical mechanics of learning , neural representational geometry , and biologically plausible learning rules . Current work examines nonlinear interactions in neural networks through the Schmidt Science Polymath Award (2023). Key article trends reveal expertise in neural coding limits (2022 Nature), synaptic plasticity models (2022 Neural Computation), and deep learning theory (2022 NeurIPS publications). His 2019 Annual Review chapter on statistical mechanics of deep learning established foundational insights into network criticality. Scientific Awards : NSF Career Award (2019) Simons Foundation Investigator (2016) McKnight Scholar Award (2015) James S. McDonnell Foundation Scholar (2014) Sloan Research Fellow (2013) As advisor, he mentors 10+ doctoral students across Applied Physics, Neurosciences, and Computer Science, including Vamshi Balanaga and Mason Kamb. His lab collaborates with experimental teams at Stanford and beyond, supported by grants from NSF , Simons Foundation , and Swartz Foundation . The Neural Dynamics & Computation Lab unites physicists, mathematicians, and neuroscientists to decode cognition through interdisciplinary methods.
