Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).
Mikkel N. Schmidt is an Associate Professor in the Department of Applied Mathematics and Computer Science at the Technical University of Denmark (DTU). His research focuses on statistical modeling, Bayesian methods, and their applications in science and industry. He has held visiting roles at Columbia University (2007) and Cambridge University (2008-2009). His work integrates probabilistic modeling with computational inference to address complex problems in diverse fields such as molecular discovery, optical communication, and brain connectivity analysis. Education highlights include visiting scholar and postdoctoral experiences at top-tier institutions. Research interests span statistical methodology development, machine learning applications, and interdisciplinary problem-solving. Current projects involve Bayesian neural networks for molecular discovery and federated learning optimization. Advising efforts include supervising multiple PhD students in areas like molecular discovery and denoising diffusion models. Notable collaborations involve work on materials science, quantum communication, and medical signal processing. His contributions bridge theoretical advancements with practical industrial applications, emphasizing interdisciplinary innovation.
Melih Kandemir is an Associate Professor at the Department of Mathematics and Computer Science, Southern Denmark University. He also serves as Research Group Leader at the Bosch Center for Artificial Intelligence (2018–2021) and held a previous role as Assistant Professor at Ozyegin University (2017–2018). His research focuses on machine learning, Bayesian methods, reinforcement learning, and uncertainty quantification. **Education**: PhD in Computer Science from Aalto University (2013), specializing in 'Learning Mental States from Biosignals'. **Research Interests**: Machine Learning, Bayesian Inference, Reinforcement Learning, Deep Neural Networks, Stochastic Processes. His work emphasizes theoretical foundations and practical applications in domains like medical imaging, control systems, and robotics. **Awards**: Two Best Paper Awards (2017). **Grants & Projects**: Includes the Carlsberg Young Researcher Fellowship (2022–2026), Novo Nordisk Foundation grants (2021–2024), and DFF-funded research on PAC-Bayesian reinforcement learning (2025–2027). **Labs/Teams**: Leads research on Bayesian deep learning and reinforcement learning within the Bosch Center for AI and SDU's interdisciplinary groups.
Ole Winther is a Professor at the Department of Biology, University of Copenhagen, specializing in Computational and RNA Biology. He also holds a joint appointment as Professor at DTU Compute, Technical University of Denmark. His research bridges machine learning, bioinformatics, and natural language processing with applications in biological sequence analysis, transcriptomics, and health informatics. Education: 1998: PhD in Physics, University of Copenhagen 1994: Master of Science in Physics, University of Copenhagen Winther's research focuses on developing advanced machine learning methodologies for biological applications. He has pioneered protein language models for sequence analysis (DeepLoc, SignalP, DeepTMHMM), interpretable deep learning for RNA subcellular localization, and benchmarking frameworks for DNA language models. His work spans latent variable models, variational inference, diffusion models, and novel architectures for deep generative modeling, with increasing emphasis on practical healthcare applications including rare disease diagnosis through findzebra.com and medical question answering with large language models. Scientific Recognition: ELLIS Fellow (2021) Head of ELLIS Copenhagen Unit H-index of 61 (Google Scholar, May 2023) 19,700+ citations (Google Scholar, May 2023) Winther has supervised 25+ PhD students to completion with 7 currently in progress, along with over 100 master's projects. He frequently serves as PhD opponent and committee chairman across European institutions. His research is supported by substantial funding including multiple Novo Nordisk Foundation grants totaling over 60 million DKK for the Center for Basic Machine Learning Research in Life Science and CAZAI projects, plus significant funding from the Danish Independent Research Fund. He leads an active research group developing cutting-edge machine learning approaches for bioinformatics and NLP challenges. Winther co-founded two spin-out companies: findzebra.com (2014, 2018), a search engine for rare diseases, and raffle.ai, an NLP startup for enterprise search. He initiated DTU's popular BSc in AI and Data program and teaches the highly enrolled MSc course in Deep Learning (450+ students) and PhD course in Bayesian Data Analysis.
Georgios Arvanitidis is an Associate Professor at the Technical University of Denmark (DTU) in the Department of Applied Mathematics and Computer Science, specifically within the Section for Cognitive Systems (CogSys). He has established himself as a leading researcher in geometric machine learning, focusing on the application of differential geometry principles to enhance machine learning models. His work bridges theoretical mathematics with practical applications in artificial intelligence, with particular emphasis on understanding the geometric structure of data manifolds and latent spaces. Dr. Arvanitidis completed his educational journey with a Bachelor's degree from the Department of Informatics at the Aristotle University of Thessaloniki, followed by a Master's degree in Computer Science from Saarland University supported by the Max Planck Institute for Informatics. He earned his PhD at DTU's Cognitive Systems section under the supervision of Søren Hauberg, with additional research experience at Philipp Hennig's Probabilistic Numerics group. Prior to his current position as associate professor, he was a PostDoc at the Max Planck Institute for Intelligent Systems working with Bernhard Schölkopf. Dr. Arvanitidis's research primarily focuses on differential geometry in machine learning , where he explores how geometric structures can enhance representation learning and statistical modeling. His work in generative models investigates how learning the geometry of data manifolds can improve deep learning architectures. In the domain of deep learning theory , he examines why deep learning models generalize effectively on unseen data, with particular attention to the curvature properties of loss landscapes. His research in approximate Bayesian inference applies geometric principles to improve uncertainty quantification in neural networks. Through his innovative approaches, Dr. Arvanitidis has established himself as a leading researcher in geometric machine learning, contributing to both theoretical foundations and practical applications across various domains including robotics and life sciences. The publication trends of Dr. Arvanitidis reveal a consistent and evolving focus on geometric approaches to machine learning problems. His recent work (2023-2025) demonstrates increasing sophistication in applying Riemannian geometry to deep learning architectures, with particular emphasis on latent space geometry, optimization on manifolds, and geometric interpretations of neural network behavior. A notable pattern is the progression from foundational work on geometric representations to more applied research in areas like robotics and causal inference. His publications span top-tier conferences including NeurIPS, ICML, ICLR, and AISTATS, reflecting the high impact of his research. The interdisciplinary nature of his work is evident in collaborations across mathematics, computer science, and robotics domains, with recent papers addressing challenges in multimodal sampling, safety guarantees for dynamical systems, and counterfactual explanations. Dr. Arvanitidis has received several notable scientific awards and recognitions: Sapere Aude starting grant from the Independent Research Fund Denmark (DFF) GADL funding i-Rase, Pathfinder, and EIC (European Innovation Council) funding Best reviewer award for NeurIPS 2019 Best reviewer award for NeurIPS 2018 Best student paper award at Robotics: Science and Systems (R:SS) 2021 Dr. Arvanitidis actively mentors PhD students and researchers, currently supervising Alejandro Valverde, Johanna Gegenfurtner, and Albert Kjøller Jacobsen. He has previously co-supervised Alison Pouplin's PhD and worked with research assistant Georgios Pantis. His group receives substantial funding through multiple prestigious grants including the Sapere Aude starting grant from the Independent Research Fund Denmark, as well as European Innovation Council funding. He has been instrumental in creating opportunities for students interested in geometric machine learning, offering BSc and MSc thesis projects focused on generative models, deep learning theory, and optimization techniques. Dr. Arvanitidis also contributes significantly to the academic community as a reviewer for top conferences including ICLR and TMLR, and as an area chair for NeurIPS, ICML, AISTATS, and UAI. He co-organized the Machine Learning Summer School 2020 in Tübingen, further demonstrating his commitment to education and community building. Dr. Arvanitidis leads a vibrant research group focused on geometric machine learning within the Cognitive Systems section at DTU. His team includes multiple PhD students working on cutting-edge research at the intersection of differential geometry and artificial intelligence. The group has developed notable software tools, including the "geometric_ml" GitHub repository with over 70 stars, which contains implementations for applying Riemannian geometry in machine learning. His research has practical applications in robotics, where geometric approaches enable more robust motion planning, as evidenced by his work on "Reactive Motion Generation on Learned Riemannian Manifolds" which received a best student paper award. Additionally, his methodologies have found applications in life sciences, as mentioned in his 2022 AISTATS paper. The collaborative nature of his work is evident through extensive partnerships with researchers at institutions including the Max Planck Institute for Intelligent Systems, University of Cambridge, and various European universities. His recent news items indicate active engagement with the academic community through talks, conference presentations, and ongoing supervision of new PhD students joining his group.
Anders Rønn-Nielsen is an Associate Professor at the Department of Finance and Center Coordinator at the Center for Statistics at Copenhagen Business School (CBS). He holds a M.Sc. in Statistics from University of Copenhagen and a PhD in Statistics and Probability Theory from Aarhus University. His research focuses on applied probability theory, particularly Lévy-based spatial models, and statistical efficiency analysis. His academic credentials include: M.Sc. in Statistics, University of Copenhagen PhD in Statistics and Probability Theory, Aarhus University Research interests span: Lévy processes and spatial stochastic modeling Extreme value theory applications in finance and natural sciences Nonparametric production frontier analysis Efficiency measurement methodologies His publications (18+ articles) emphasize theoretical probability and statistical applications in efficiency analysis. He has served as external examiner at Aarhus University and Copenhagen University for master’s and PhD examinations (2017–2019). His teaching responsibilities include advanced probability theory courses and statistical methods training for economics students.
Jes Frellsen is an Associate Professor at the Department of Applied Mathematics and Computer Science (DTU) since 2016. Previously, he held academic positions at the IT University of Copenhagen (2016-2019), postdoctoral roles at University of Cambridge (2013-2016) and University of Copenhagen (2011-2013). Education: PhD in Bioinformatics (2011), University of Copenhagen MSc in Bioinformatics (2007), University of Copenhagen BSc in Mathematics and Computer Science (2005), University of Copenhagen EAP Exchange at University of California, Santa Cruz (2004-2005) Research Focus Jes Frellsen specializes in statistical machine learning , particularly generative AI and deep generative models with applications in bioinformatics . His work integrates Bayesian inference , directional statistics , and Markov chain Monte Carlo methods to address challenges in macromolecular structure prediction and missing data imputation . Recent efforts explore uncertainty quantification in image segmentation and generative modeling for materials science. Advising & Collaborations He actively supervises PhD students and postdoctoral researchers in projects spanning news recommendation systems , medical imaging , and 3D structure generation . Collaborations include work with Zoubin Ghahramani (Cambridge) and Thomas Hamelryck (Copenhagen), with contributions to protein structure prediction and statistical methods in structural bioinformatics .
Tuukka Ruotsalo serves as Associate Professor in the Machine Learning Section at the Department of Computer Science, University of Copenhagen. His research bridges human cognition with computational systems through brain-computer interfaces and physiological computing. As Academy Research Fellow at University of Helsinki (2019-2024), he maintained dual institutional affiliations while leading cutting-edge work in neuro-linguistic modeling and affective relevance. His research focuses on brain-computer interfaces for information retrieval , where he pioneers methods to decode cognitive states from neural signals to improve search systems. Key areas include affective relevance modeling that integrates emotional states into search algorithms, and neuro-linguistic reconstruction that translates brain activity into language. His work on fairness-relevance tradeoffs in recommender systems established Pareto frontier evaluation frameworks now widely adopted in ethical AI research. Recent publications demonstrate how physiological signals like EEG and galvanic skin response can create more adaptive human-information interaction systems. Ruotsalo's scientific recognition includes the prestigious Academy Research Fellow position. His publications in IEEE Transactions on Human-Machine Systems , Journal of the Association for Information Science and Technology , and Communications Biology reveal growing interdisciplinary impact. His advising spans cognitive neuroscience and machine learning students, with notable collaborations across the SCIENCE AI Centre. Current projects include the TreeSense initiative for remote sensing of global tree resources and development of quantum-inspired neural architectures. His lab leverages the department's powerful compute cluster for large-scale physiological data analysis.
Rasmus Waagepetersen is a Professor in the Department of Mathematical Sciences at Aalborg University, affiliated with The Faculty of Engineering and Science. His research focuses on spatial statistics, quantitative genetics, and statistical methodology for spatial point processes. He leads and participates in interdisciplinary projects such as urbanLab (spatial data analysis for urban planning) and studies on microbiome interactions in agricultural systems. Key research areas include spatial point processes, Markov chain Monte Carlo methods, and statistical inference for complex ecological and biomedical data. His work frequently involves collaborations with environmental and biological scientists, as seen in projects analyzing root microbiota assemblies in legumes and climate data for building simulations. Waagepetersen has contributed to methodological advancements in spatial statistics, including goodness-of-fit tests, likelihood-based inference for log Gaussian Cox processes, and quasi-likelihood approaches for case-control point pattern data. His research has been supported by grants from institutions like the Villum Foundation. Key Projects: urbanLab, Klimadata til fugtsimuleringer, Nod factor signaling in plant microbiota. Grants: Multiple projects funded by the Villum Foundation and Danish research councils. His recent publications address topics such as space-time point processes, microbiome data analysis, and statistical modeling in education. Waagepetersen maintains an active research group and collaborates internationally on both theoretical and applied statistical problems.
Filipe Rodrigues is an Associate Professor in the Department of Technology, Management and Economics at the Technical University of Denmark (DTU), where he conducts research in intelligent transportation systems and transportation science. His work integrates machine learning, artificial intelligence, and behavioral modeling to improve urban mobility and public transport systems. His research interests lie at the intersection of machine learning , transportation science , and behavioral modeling . He specializes in discrete choice modeling , reinforcement learning , graph neural networks , and smart card data analytics . His work contributes to sustainable urban mobility, leveraging big data and AI for proactive traffic control and public transport optimization. The recent publications highlight a strong trend toward integrating AI and behavioral science in transportation. Key themes include ride-sourcing driver behavior , public transport trip validation , autonomous fleet control , and causal machine learning . These works predominantly employ deep learning , Bayesian modeling , and offline reinforcement learning techniques, often applied to real-world datasets from Denmark and beyond. Scientific Contributions: Active contributor to journals like Transportation Research Part C and Journal of Choice Modelling . Supervises multiple PhD projects on AI in transportation and causal modeling. Regular presenter at major transportation and AI conferences. Advising and Grants: Filipe Rodrigues is the main or co-supervisor of several PhD students including O. B. Lassen, F. M. F. Santos, A. Nguyen, and X. Wu. He leads and participates in funded research projects such as 'Proactive traffic control through AI and Big Data' and 'Causal Graph Neural Networks for machine learning meta-modelling', indicating sustained grant support. His collaborative network spans institutions in Europe and beyond. Labs and Teams: He is part of the Intelligent Transportation Systems research group at DTU, collaborating closely with researchers like F. C. Pereira and C. M. L. Azevedo. The team focuses on data-driven mobility solutions, combining simulation, machine learning, and behavioral insights.
Rasmus Nielsen is a Professor at the University of Copenhagen, specifically affiliated with the Globe Institute and the Section for Geogenetics. His research spans evolutionary genetics, population genetics, and computational genomics with a focus on both human and non-human species. He maintains an active research profile with numerous high-impact publications in leading scientific journals. Professor Nielsen's research interests center around evolutionary and population genetics, with particular expertise in ancient DNA analysis, statistical methods for genomic data, and phylogenetics. His work bridges computational biology with empirical data from diverse species, including humans, plants, and other organisms. He has made significant contributions to understanding human evolutionary history, population structure, and the genetic basis of adaptation. His research also extends to medical genomics, particularly in understanding the genetic architecture of complex traits and diseases. His recent publications demonstrate a strong focus on methodological development in genomic analysis, with papers appearing in top-tier journals like Nature , Science , and Nature Reviews Genetics . His work shows consistent engagement with both theoretical and applied aspects of genetics, spanning human evolutionary history, medical genomics, and plant evolutionary biology. The research output reveals a collaborative approach, with frequent co-authorship across multiple institutions and disciplines. As a Professor at the University of Copenhagen's Globe Institute, Nielsen leads research within the Section for Geogenetics, which focuses on evolutionary and population genetics using cutting-edge genomic approaches. The section maintains strong connections with both computational and empirical research groups, facilitating interdisciplinary work that spans from methodological development to application in diverse biological contexts.
Manfred Jaeger is an Associate Professor at the Department of Computer Science, Technical Faculty of IT and Design, Aalborg University. His research focuses on Artificial Intelligence , Bayesian Networks , and Graph Neural Networks , with significant contributions to probabilistic reasoning and relational learning. University: Aalborg University School: Technical Faculty of IT and Design Department: Department of Computer Science Jaeger's research explores inductive and probabilistic reasoning , statistical relational learning , and model checking . His recent work integrates heterogeneous graph neural networks with relational Bayesian network encodings to enhance reasoning capabilities in complex systems. Key trends in his publications include relational deep learning , probabilistic inference , and graph-based modeling . He has contributed to applications in social network community detection , reinforcement learning for MDPs , and latent variable models for graph learning . Jaeger collaborates on projects involving incomplete data analysis , modularization of complex tasks , and probabilistic logic . His datasets on multi-multi-instance learning networks are publicly available for research use.
Orimar Sauri Arregui is an Associate Professor in the Department of Mathematical Sciences at Aalborg University's Faculty of Engineering and Science, Denmark. His research lies at the intersection of mathematical statistics, stochastic processes, and financial modeling. Research Interests: His work focuses on ambit fields , trawl processes , Lévy and infinite divisible random fields , and nonparametric estimation in continuous time. He investigates asymptotic behavior, limit theorems, and statistical inference for complex stochastic models, with applications in financial market microstructure and energy flux modeling. The analysis of his recent publications reveals a strong trend in theoretical statistics and probability, particularly in developing and analyzing models driven by non-Gaussian noise and long-range dependence. His work often involves high-frequency data and contributes to the foundations of spatiotemporal modeling. Scientific Contributions: Developed mathematical frameworks for financial market microstructure. Advanced theory for nonparametric estimation of trawl processes. Derived asymptotic error distributions for numerical schemes in stochastic delay equations. Proved local limit theorems for energy fluxes in random fields. Advising and Research Activity: He has been involved in PhD supervision and maintains an active research output, primarily through preprints on arXiv and SSRN. His collaborations span topics in financial econometrics and statistical physics. Though specific grants are not listed, his consistent publication record suggests ongoing research funding. Laboratory and Teams: While no formal lab is mentioned, his work is part of the broader research network in mathematical statistics and financial mathematics at Aalborg University, with notable collaborations in stochastic modeling and econometrics.
Andres Masegosa is an Associate Professor at the Department of Computer Science, Aalborg University (AAU), within The Technical Faculty of IT and Design. He is actively involved in the DarkScience project (2022–present), focusing on metagenomic binning and microbial dark matter analysis. His research interests span Bayesian networks, machine learning, probabilistic graphical models, and educational methodologies in computer science instruction. Key research contributions include advancements in PAC-Bayes theory, genome representation learning, and cold posterior effects in Bayesian models. He has published extensively in top venues like Advances in Neural Information Processing Systems and Transactions on Machine Learning Research. His work often bridges theoretical contributions with practical applications in genomics and education. Masegosa leads the development of tools like InferPy for probabilistic modeling and has contributed to open-source projects such as the AMIDST toolbox. His educational research explores learning styles and active learning strategies, emphasizing live coding and programming exercises. Collaborations include interdisciplinary projects with microbiologists and data scientists, reflecting his expertise in computational methods for complex biological systems. His research portfolio demonstrates a strong focus on scalable probabilistic methods and their real-world applications.
Thomas Dyhre Nielsen is a Professor (MSO) in the Department of Computer Science at Aalborg University . He is a member of the Distributed, Embedded and Intelligent Systems (DEIS) research group and contributes to the Artificial Intelligence and Machine Learning team at the university. His primary research interests lie in the theoretical and applied aspects of probabilistic graphical models , machine learning , and deep generative models . His work spans from foundational methods for learning and inference to the development of frameworks for solving complex decision problems. He is the co-author of the authoritative textbook Bayesian Networks and Decision Graphs . His recent research output reveals a strong trend towards interdisciplinary applications. His 15 most recent publications demonstrate significant work in bioinformatics , using graph neural networks and variational autoencoders for metagenomic binning, and in urban infrastructure , applying reinforcement learning and probabilistic models to optimize stormwater and wastewater management systems. He also has impactful research in healthcare , developing Bayesian network models for clinical risk prediction. Senior area editor for the International Journal of Approximate Reasoning . Principal or Co-Investigator on research projects such as the AMIDST project (developing a Java toolbox for scalable probabilistic machine learning) and PGM 2020 (organizing the International Conference on Probabilistic Graphical Models). Actively supervising research, as evidenced by a current opening for a PostDoc position in probabilistic machine learning. Professor Nielsen leads a research lab focused on probabilistic machine learning, which is part of the larger DEIS and AI/ML teams at Aalborg University. His group develops and applies advanced models to real-world problems in environmental science, healthcare, and intelligent systems.
