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Simo SärkkäView profile

Professor

• Machine Learning
• Signal Processing
• Bayesian Filtering
• +7 more

Professor Simo Särkkä holds a position in Sensor Informatics and Medical Technology at the Department of Electrical Engineering and Automation (EEA), Aalto University. His research focuses on multi-sensor data processing, Bayesian filtering, machine learning, and their applications in medical technology, brain imaging, and inverse problems. He leads research groups including the Helsinki Institute for Information Technology (HIIT) and Sensor Informatics and Medical Technology. His work bridges theoretical advancements in probabilistic methods with practical implementations in healthcare and engineering. Key research interests include Gaussian processes, stochastic differential equations, quantum machine learning, and signal processing. He has contributed to advancements in algorithms for nonlinear state-space models, parallel computing techniques, and medical imaging technologies such as scatter correction in CT scans. His methodologies are applied across domains like autonomous systems, robotics, and bioengineering. Notable publications span topics like quantum-assisted Gaussian regression, physics-informed machine learning for industrial processes, and parallel-in-time numerical methods. His work emphasizes computational efficiency and robustness in high-dimensional and real-time systems.

Antti HonkelaView profile

Professor

• Privacy-preserving machine learning
• Differential Privacy
• Bayesian Machine Learning
• +3 more

Antti Honkela is a Professor of Data Science at the University of Helsinki's Department of Computer Science, within the Faculty of Science. He also serves as the Coordinating Professor for the Privacy-preserving and Secure AI Research Programme at the Finnish Center for Artificial Intelligence (FCAI), and as Deputy Director of the Master's Programme in Data Science. His roles include membership in the Health and Social Data Permit Authority (Findata) and as an Action Editor for Transactions on Machine Learning Research. Honkela's research focuses on privacy-preserving machine learning, differential privacy, Bayesian methods, and their applications in computational biology and healthcare. He leads projects such as the European Lighthouse in Secure and Safe AI (ELSA) and the Data Literacy for Responsible Decision-making initiative. His work emphasizes developing robust frameworks for privacy-aware AI, including differentially private synthetic data and federated learning. Honkela has advised numerous PhD and Master's students, and his contributions span theoretical advancements and practical implementations, such as the D3p Python package for differentially private probabilistic programming. Key contributions include advancements in Bayesian inference from synthetic data, privacy accounting mechanisms, and computational methods for genomic epidemiology. His interdisciplinary approach bridges machine learning, statistics, and healthcare, addressing challenges in data privacy and secure AI deployment.

Harri LähdesmäkiView profile

Associate Professor

• Probabilistic Machine Learning
• Deep Generative Models
• Artificial Intelligence
• +4 more

Harri Lähdesmäki is an Associate Professor (tenured) at the Department of Computer Science, Aalto University, where he leads the Computational Systems Biology research group. His work focuses on probabilistic machine learning and deep generative models with applications in biomedicine and molecular biology. Key Research Interests: Probabilistic machine learning, deep generative models, computational biology, bioinformatics, longitudinal data modeling Contact: harri.lahdesmaki@aalto.fi | Konemiehentie 2, 02150 Espoo, Finland His recent publications highlight advancements in: Gaussian process priors for scalable deep generative models Single-cell analysis of immune repertoires in leukemia and diabetes Probabilistic deconvolution methods for RNA-seq data Epigenetic analysis using hidden Markov and mixed models Transformer-based survival prediction and missing data handling Harri’s work integrates mechanistic modeling with Bayesian inference, particularly applied to immunology, cancer biology, and early disease prediction.

• Machine Learning
• Computational Neuroscience
• Artificial Intelligence
• +7 more

Aapo Hyvärinen is a Professor of Computer Science at the University of Helsinki , affiliated with the Helsinki Institute for Information Technology and the Helsinki Probabilistic Machine Learning Lab . He previously held the position of Professor of Machine Learning at the Gatsby Computational Neuroscience Unit, University College London (2016-2019). Education : Undergraduate Mathematics at University of Helsinki, Vienna, and Paris; Ph.D. in Information Science from Helsinki University of Technology (1997) His research focuses on machine learning and computational neuroscience , particularly: Independent Component Analysis (ICA) Natural Image Statistics Causal Representation Learning Neural Signal Processing Applications to brain imaging (MEG, CryoEM) Recent publications emphasize causal discovery , identifiable machine learning , and nonlinear ICA . Key projects include: VETURI (AI for health) DIGIMIND (AI in mental health) CIFAR grants (2022-2025) Scientific awards : Highly Cited Researcher (2010) He serves as Action Editor for the Journal of Machine Learning Research and Neural Computation , and has held Area Chair roles at NeurIPS, ICML, ICLR, AISTATS, and UAI conferences. His work bridges theoretical machine learning with neuroscience and philosophical implications of artificial intelligence .

Markus HeinonenView profile

Research Fellow

• Machine Learning
• Probabilistic Modeling
• Bayesian Inference
• +5 more

Markus Heinonen is an Academy Research Fellow at Aalto University's Department of Computer Science within the School of Science. His academic position is tied to Harri Lähdesmäki's Professorship, focusing on probabilistic machine learning. He holds a Doctoral degree in Engineering and Technology from the University of Helsinki (2013). His research integrates probabilistic modeling , deep learning , and differential equations , with applications in computational biology, drug discovery, and biophysics. Key themes include Gaussian processes, Bayesian inference, generative models, and their use in understanding complex biological systems like immune cell behavior (e.g., T cell receptor analysis in aplastic anemia) and molecular design. He leads major projects such as the Deep Learning with Differential Equations initiative (2020–2025), exploring continuous-time models and physics-informed neural networks. His work bridges theory and application, evidenced by collaborations in diffusion models , optimal transport , and single-cell analysis . Publications span over 65 peer-reviewed outputs, with recent emphases on robust neural network training, multi-target molecular prediction, and interpretable drug design frameworks. His research contributes to UN Sustainable Development Goal 3 (Good Health) through advancements in disease modeling and therapeutic development. He has undertaken visiting research roles at the University of California, San Francisco (2017) and Telecom ParisTech (2013–2014). Media highlights include recognition for work on TCR-epitope prediction and AI-driven enzyme engineering.

Pekka MarttinenView profile

Associate Professor

• Machine Learning
• Large Language Models
• Reinforcement Learning
• +8 more

Pekka Marttinen is a tenured Associate Professor of Machine Learning at Aalto University, Department of Computer Science, and leads the Machine Learning for Health (Aalto-ML4H) group within the Helsinki Institute for Information Technology HIIT. Education: M.Sc. in Applied Mathematics, University of Helsinki (2004) Ph.D. in Statistics, University of Helsinki (2008) Title of Docent in Information and Computer Science, Aalto University (2015) Research Focus: His methodological work spans large language models, reinforcement learning, deep learning, probabilistic machine learning, and causal inference . These techniques are applied to critical domains of healthcare, bioinformatics, statistical genetics, epidemiology, and personalized medicine . The group develops novel algorithms, theoretical guarantees, and open-source software that enable data-driven discovery and decision-making in medicine and biology. Publication Trends: Across 2022-2024 the lab has concentrated on (i) rigorous causal reasoning over temporal clinical data, (ii) principled uncertainty quantification in LLMs, (iii) representation learning for neural network comparison, and (iv) translational projects that turn raw EHRs into actionable clinical insights. Earlier work integrated high-dimensional genomics with metabolomics and mapped evolutionary forces in bacterial pathogens. Scientific Awards & Recognition: While no specific awards are listed, his sustained publication record in top-tier venues (NeurIPS, ICML, AISTATS, Nature Genetics, PLOS CB) and his role as responsible professor of the Machine-Learning, Data-Science and AI major signify significant peer recognition. Advising & Grants: Prof. Marttinen currently mentors 8 PhD students as primary supervisor and an additional 7 PhD students as co-supervisor. He has already graduated 8 PhDs since 2014. The group is supported through competitive funding including the Finnish Center for Artificial Intelligence (FCAI) doctoral program. Labs & Teams: He directs the Machine Learning for Health (Aalto-ML4H) research group, comprising postdocs Hans Moen, Ti John, Alexander Nikitin, Negar Safinianaini, Linli Zhang, Zhiyuan Li, and the above-mentioned PhD cohort.

• Bayesian Statistics
• Machine Learning
• Statistical Modeling
• +3 more

Paul-Christian Burkner is a researcher in the Department of Computer Science at Aalto University. His work focuses on Bayesian statistical methods, computational modeling, and probabilistic programming. He collaborates with Professor Aki Vehtari's research group and has published extensively on topics like model sensitivity, spatiotemporal analysis, and variable selection techniques. His research interests include: Bayesian inference and model comparison Computational statistics Probabilistic programming Machine learning algorithms Statistical modeling in social sciences Neuroimaging data analysis Recent publications demonstrate expertise in simulation-based calibration, spatiotemporal modeling, and Gaussian process approximations. Collaborations span psychology, neuroscience, and machine learning domains. Contact: ext-paul-christian.burkner@aalto.fi

• Statistical signal processing
• Robust statistical methods
• Array processing
• +6 more

Esa Ollila serves as Associate Professor in the Department of Signal Processing and Acoustics at Aalto University, Finland, and holds an adjunct professorship in Statistics at the University of Oulu. His academic appointments include Academy of Finland Research Fellow (2010-2015) and prior senior research/lecturing roles at both institutions. His educational background features: M.Sc. in Mathematics, University of Oulu (1998) Ph.D. in Statistics (with honors), University of Jyväskylä (2002) D.Sc.(Tech) in Signal Processing (with honors), Aalto University (2010) Professor Ollila's research centers on statistical signal processing and robust statistical methodologies , with significant contributions to array processing, high-dimensional data analysis, and covariance matrix estimation. His work bridges theoretical statistics with practical applications in radar systems, wireless communications, and big data analytics, emphasizing robustness against outliers and computational efficiency in modern data-intensive environments. Current focus areas include compressed sensing, sparse approximation, and blind source separation techniques. Analysis of his 15 most recent publications (2024-2025) reveals three dominant trends: (1) robust covariance learning for massive random access systems, (2) integrated sensing and communications (ISAC) for 6G networks using advanced beamforming, and (3) geometric approaches to elliptical distributions in statistical inference. His work increasingly incorporates deep learning (GANs, graph neural networks) while maintaining strong foundations in classical signal processing theory. Key recognitions include: Academy of Finland Postdoctoral Fellowship (2004-2007) Academy of Finland Research Fellowship (2010-2015) His research has been supported through prestigious Academy of Finland grants totaling over a decade of continuous funding. Professor Ollila currently leads an active research group at Aalto University, supervising doctoral candidates and collaborating internationally with institutions including Princeton University (where he served as Visiting Post-doctoral Research Associate during 2010-2011). He maintains strong ties with the University of Oulu through his adjunct professorship and has contributed to EURASIP's Special Area Team on Theoretical and Methodological Trends in Signal Processing. The Esa Ollila Research Group focuses on cutting-edge challenges in statistical signal processing, with current projects spanning robust DOA estimation under non-Gaussian noise, covariance matrix learning for massive MIMO systems, and machine learning-enhanced radar-communication integration. The group actively develops open-source tools like the fitHeavyTail R package for heavy-tailed distribution modeling and maintains collaborations with industry partners in wireless communications.

• Deep Learning
• Automatic Speech Recognition (ASR)
• Spoken Language Modeling
• +3 more

Mikko Kurimo is a Full Professor at Aalto University's Department of Information and Communications Engineering, School of Electrical Engineering. He earned his M.Sc., Lic.Tech., and D.Sc.(Tech.) from Helsinki University of Technology (1992, 1994, 1997) and pioneered neural networks for automatic speech recognition (ASR) in his PhD thesis. After research roles at IDIAP (Swiss AI center) and visiting positions at University of Colorado, Edinburgh, SRI, ICSI, and Nitech, he leads Aalto's ASR group since 2000. His work focuses on unsupervised subword modeling for morphologically complex languages (Finnish, Estonian, Turkish, Arabic) and large speech foundation models. PhD in Neural ASR (Helsinki University of Technology, 1997) Research Scientist at IDIAP (Switzerland) Visiting Fellow at University of Colorado, Edinburgh, SRI, ICSI, Nitech Head of Aalto ASR Group (2000-present) His research spans deep learning for ASR, spoken language modeling , and low-resource language solutions . Recent work explores continued pre-training of self-supervised models, multimodal emotion recognition, and pronunciation assessment using LLMs. He led the winning team in the 2017 Multi-Genre Broadcast challenge and secured competitive funding in Tekes Challenge Finland and EC's H2020-ICT-2017. Key article trends include: Advancements in children's speech recognition and dysarthric speech processing Integration of generative AI for language learning feedback Specialization in low-resource Uralic languages (Finnish, Northern Sámi) Development of robust ASR systems for complex phonetic environments Scientific Awards ACM Multimedia 2023 Computational Paralinguistics Challenge Prize First place in MGB3 2017 Arabic ASR Challenge ISCA Best Student Paper Award (2011) Professeur Invité at Université de Saint-Etienne (2005-2006) Royal Society International Short Visit Fellowship (2004) Professor Kurimo leads the Speech Recognition Group at Aalto, collaborating with COIN (Centre of Excellence in Computational Inference) and AIRC (Adaptive Informatics Research Centre). His projects like CaptainA mobile app demonstrate practical applications of ASR in language education. He has supervised numerous publications with co-authors in domains spanning bandwidth extension, stuttering detection, and speech sound disorder assessment.

• Bioinformatics
• Genomic Epidemiology
• Metagenomics
• +3 more

Tommi Mäklin is a researcher affiliated with the University of Helsinki, conducting interdisciplinary research at the intersection of bioinformatics, microbiology, and genomic epidemiology. His work focuses on bacterial pathogen analysis, metagenomics, and the application of computational methods to study infectious diseases. Mäklin has contributed to high-impact studies on topics such as colibactin-producing Escherichia coli's link to cancer incidence, hospital-acquired infections during the pandemic, and enhanced metagenomic analysis tools like TRACS and Themisto. Key affiliations include visiting research positions at the University of Oslo (2024) and EMBL European Bioinformatics Institute (2023–2023), where he received the Theory@EMBL Visitor fellowship. His research has been featured in prominent journals like Nature Communications and The Lancet Microbe , with findings highlighted in media such as Yle and HS. Education: Not explicitly stated in provided materials. Research Interests: Genomic epidemiology, bacterial pathogen transmission, metagenomics, antibiotic resistance, and computational methods for microbial analysis. His recent work explores geographical cancer incidence correlations with bacterial exposure, hospital pathogen surveillance, and scalable genomic tools for outbreak analysis. Awards include recognition for methodological advancements in bioinformatics and microbial genomics.

Anna KuparinenView profile

Professor

• Ecological Modeling
• Fisheries Science
• Aquatic Ecosystems
• +3 more

Anna Kuparinen is a Professor at the University of Jyväskylä's Faculty of Mathematics and Science, Department of Biological and Environmental Science. Her research group, EcoEvoAqua, focuses on aquatic species and their ecosystems, particularly eco-evolutionary dynamics. Key research areas include ecological modeling, fisheries-induced evolution, food web stability, and environmental impacts on species survival. Recent work examines predator reintroduction effects, climate-driven selection pressures, and parasite-host interactions in aquatic systems. Publications span theoretical ecology, conservation biology, and fisheries management. Her research emphasizes interdisciplinary approaches to address complex ecological challenges. Education details are not explicitly listed, but her academic career reflects extensive contributions to aquatic ecology and conservation. Awards are not mentioned in the text, though her prolific publication record indicates recognition in her field. She leads the EcoEvoAqua research team, which integrates computational models with empirical data to study ecosystem resilience and biodiversity. Ongoing projects include modeling Lake Oulujärvi dynamics and exploring manganese toxicity in fish populations.

• Machine Learning
• Bayesian Optimization
• Gaussian Processes
• +4 more

Ti John is a Research Fellow at Aalto University's Department of Computer Science within the School of Science. He is affiliated with Professor Marttinen's research group and the Probabilistic Machine Learning group led by Professor Samuel Kaski. His work connects with the Finnish Center for Artificial Intelligence (FCAI) and the Helsinki Institute for Information Technology (HIIT). Dr. John's research focuses on machine learning, particularly Bayesian optimization, Gaussian processes, and point process models. His work spans theoretical developments in neural processes and practical applications in healthcare analytics and large language models. He has made significant contributions to equivariant neural processes, causal mediation analysis in healthcare, and interpretability of additive models. His publication record shows consistent output with 17 publications between 2021-2024, including multiple papers at top AI conferences like NeurIPS, ICML, and ICLR. His research demonstrates strong interdisciplinary connections between statistical modeling, artificial intelligence, and healthcare applications. Active reviewer for NeurIPS, ICLR, AISTATS Reviewer for Journal of Machine Learning Research Member of Finnish Center for Artificial Intelligence project Dr. John has been actively contributing to the machine learning community through peer review and conference participation, demonstrating expertise across multiple subfields of artificial intelligence and statistical modeling.

• Machine Learning
• Artificial Intelligence
• Neural Networks
• +3 more

Daolang Huang is a Doctoral Researcher and Student in the Department of Computer Science at the School of Science, affiliated with Professor Samuel Kaski's group. He holds a Bachelor's degree in Engineering and Technology from Jinan University (2020). His research focuses on advanced machine learning techniques, including Bayesian inference, robust statistical modeling, and simulation-based methods. Key areas include experimental design optimization, neural processes, and equivariance in deep learning. Recent work emphasizes decision-aware algorithms and cost-effective simulation frameworks. Huang has collaborated internationally, with publications in top venues like NeurIPS. Despite no listed awards, his work demonstrates significant contributions to probabilistic modeling and optimization. Education : Bachelor's degree in Engineering and Technology, Jinan University (2020) Research Interests : Bayesian methods and amortized inference Robust statistics under model misspecification Continuous control and neural process architectures Optimization algorithms with decision-theoretic foundations Recent Research Trends : His articles (2020–2025) emphasize Bayesian experimental design, preference-based optimization, and equivariant neural networks. Themes include balancing statistical rigor with computational efficiency, particularly in high-dimensional decision-making contexts. Labs/Teams : Active member of Samuel Kaski’s research group, focusing on interdisciplinary applications of machine learning.

• Bayesian Statistics
• Reliability Engineering
• Risk Analysis
• +4 more

Ahmad BahooToroody is an Academy Research Fellow at Aalto University’s Department of Energy and Mechanical Engineering, specializing in Bayesian statistics, reliability engineering, and risk analysis for autonomous maritime systems. He is actively involved with the Marine and Arctic Technology research group and leads projects that integrate machine learning with safety-critical applications in the maritime and offshore sectors. Research Interests Bayesian statistical methods for reliability and risk modeling Machine learning and deep learning for anomaly detection in autonomous systems Safety assessment of offshore installations and maritime operations Prognostic health management of marine renewable energy systems Human factors and expert judgment in sociotechnical maritime systems His work often incorporates advanced techniques such as Gaussian processes, LSTM-based neural networks, and dynamic Bayesian networks to address uncertainties in complex engineering systems operating in harsh marine environments. Publication Trends Across 2022–2025, BahooToroody’s publications reveal a strong trajectory toward integrating data-driven models with physics-based simulations. Dominant themes include real-time risk monitoring of autonomous ships, failure prognosis for unattended machinery, and safety assessment frameworks for offshore structures. His collaborative outputs span high-impact journals such as Reliability Engineering & System Safety and Safety Science , underscoring his leadership in maritime safety analytics. Research Groups & Labs Marine and Arctic Technology Research Group, Aalto University Academy Research Fellow network within the Department of Energy and Mechanical Engineering Doctoral Supervision & Grants While specific grant details are not listed, his role as Doctoral Candidate Supervisor since 2020 indicates active mentorship of PhD researchers. He is also the Principal Investigator on projects funded under the Academy of Finland Fellowship scheme, supporting next-generation maritime risk analytics.

Lu ChengView profile

Visiting Professor

• Genomics
• Bioinformatics
• Microbial Genetics
• +3 more

Lu Cheng is a Visiting Professor in the Department of Computer Science at the University of Helsinki, affiliated with the Vehtari Aki Professorship. He holds a Doctor of Philosophy in Natural Sciences from the University of Helsinki (2013). His research focuses on computational genomics, bioinformatics, and microbial genetics, with emphasis on DNA sequence analysis, nanopore sequencing technologies, and systems biology. He leads projects on alternative splicing in cancer and the impact of microbiota on human health. Notable contributions include the NanoBaseLib benchmark dataset and methods for RNA modification analysis. His work addresses UN Sustainable Development Goals related to good health and innovations in data science. Education: Doctor of Philosophy in Natural Sciences (2013), University of Helsinki; Doctoral degree in Natural Sciences (2013), University of Helsinki. Research Interests: Genomics, computational biology, microbial ecology, RNA sequencing technologies, and bioinformatics tool development. His projects explore bacterial population dynamics, host-pathogen interactions, and applications of machine learning in genomics. Advising: Supervises doctoral researchers including Guangzhao Cheng and Chengbo Fu. Active in grants such as the Academy of Finland Research Fellowship (2023-2025). Labs/Teams: Leads research groups focused on single-cell genomics and computational methods for biological systems.