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Hyun (Michel) Koo is a Professor at the University of Pennsylvania School of Dental Medicine , with affiliations in the Department of Orthodontics , Division of Community Oral Health , and Division of Pediatric Dentistry . As Co-Founder and Co-Director of the Center for Innovation & Precision Dentistry (CiPD) , he leads interdisciplinary efforts merging bioengineering, nanotechnology, and oral health research. Education : DDS and PhD Research Focus : Biofilms, bacterial-fungal interactions, and nanotechnology for oral disease prevention Leadership : Co-Director of CiPD; key roles in training programs like NIDCR-sponsored R90 and T90/R90 Dr. Koo’s research explores biofilm mechanisms in oral infectious diseases, particularly childhood caries, through engineering methods and microrobotics . His team developed micron-scale robots for automated biofilm eradication and FDA-approved nanoparticles for caries prevention. Collaborations with Penn Engineering, including Dr. Daeyeon Lee and Dr. Kacy Cullen, emphasize translational approaches. The 15 most recent publications highlight his work in nanorobotics , interkingdom biofilms , and precision diagnostics . Articles span 2025–2024 and address topics like adaptive micromotors , biofilm matrix degradation , and single-cell microbial interactions . These emphasize his focus on targeted therapies and biofilm microenvironment engineering . Key Awards : Elected Fellow, American Association for the Advancement of Science (AAAS) IADR Distinguished Scientist Award for innovative dental research Dr. Koo trains next-generation researchers through the CiPD NIDCR T90/R90 Postdoctoral Training Program , mentoring fellows like Smruti Nair (ACE2 Chewing Gum development) and Zhi Ren (K99 awardee). His work intersects with Penn Health-Tech, CT3N , and Penn Institute for Biomedical Informatics , fostering transdisciplinary innovation.

• Biofilms
• Oral Infectious Diseases
• Nanotechnology
• +3 more

Angela D. Kent is a Professor in the Department of Natural Resources and Environmental Sciences at the University of Illinois Urbana-Champaign, where she also serves as Director of the Program in Ecology, Evolution, and Conservation Biology within the School of Integrative Biology. She is affiliated with the Carl R. Woese Institute for Genomic Biology. Her research focuses on microbial communities in agroecosystems and natural environments, particularly their roles in nitrogen cycling, soil health, and sustainable bioenergy production. Key research interests include microbial interactions in plant-microbe systems, the impact of genetic variation in crops on microbial processes, and the ecological and biogeochemical implications of soil microbiomes. She has authored over 99 publications and supervised datasets on topics such as denitrification dynamics, rhizosphere microbiome assembly, and microbial contributions to nitrogen retention. Dr. Kent has received the NACTA Educator Award (2012) and has contributed to high-impact studies on topics like microbial community responses to environmental stressors and the application of stable isotopes in bioenergy research. Her work bridges microbial ecology, agronomy, and environmental science, emphasizing practical solutions for sustainable agriculture and ecosystem management.

• Microbial Ecology
• Nitrogen Cycling
• Agroecosystems
• +3 more

Mary K. Firestone is Professor of the Graduate School in the Department of Environmental Science, Policy and Management at UC Berkeley. Her research revolutionized understanding of soil microbial processes, particularly oak regeneration techniques and microbial mediation of carbon/nitrogen cycling in terrestrial ecosystems. Firestone's work examines microbial responses to environmental change, including drought, rewetting, and warming scenarios. Her lab develops innovative methods like quantitative stable isotope probing (qSIP) to trace microbial activity in complex soil environments. Research spans grassland, rangeland, and agricultural ecosystems. Honors include election to the National Academy of Sciences (2017), Soil Ecology Society Career Achievement Award (2017), and American Geophysical Union Fellowship (2016). She holds the Betty and Isaac Barshad Chair in Soil Sciences. Current PhD candidates and postdoctoral researchers in the Firestone Lab investigate viral-bacterial interactions in soil, mycorrhizal carbon transfer, and drought impacts on soil carbon persistence. Field studies at California's Hopland Research Center examine grassland responses to climate variability.

• Soil Microbial Ecology
• Carbon Cycling
• Nitrogen Cycling
• +2 more

Jennifer L. Clarke is a Professor in the Department of Statistics at the University of Nebraska–Lincoln and Director of the Quantitative Life Science Initiative. She holds leadership roles in enabling big data integration across the University of Nebraska system through collaborative research programs. Her affiliations include the Institute of Agriculture and Natural Resources (IANR) and the College of Agriculture and Natural Resources. Dr. Clarke's research focuses on statistical methodology for high-dimensional data, computational biology, bioinformatics, and bacterial genomics. Her work bridges statistical innovation with applications in oncology, microbiome analysis, and agricultural phenomics. Key areas include predictive modeling, machine learning, and genomic/metagenomic data integration. Her recent publications span cancer biomarker discovery, plant phenotyping methodologies, and microbial community analysis, reflecting her interdisciplinary approach. Articles emphasize translational applications like therapeutic target identification and precision agriculture. Dr. Clarke leads initiatives fostering collaboration between statisticians and domain scientists, including the Quantitative Life Science Initiative and contributions to the Agricultural Genome-to-Phenome Initiative (AG2PI). Her work advances data-driven solutions for healthcare and food security challenges. Notable projects include developing statistical tools for microbiome studies, analyzing root architecture via 3D imaging, and investigating cranberry-derived compounds' cancer-inhibitory mechanisms. Her methodological contributions include hybrid clustering techniques and predictive model validation frameworks.

• Statistical Methodology
• Bioinformatics/Computational Biology
• Data Mining/Machine Learning
• +3 more

Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.

• Plant-microbe interactions
• Biomolecular engineering
• Systems biology
• +4 more

Pamela Ronald is a Distinguished Professor of Plant Pathology at the University of California, Davis, affiliated with the Department of Plant Pathology within the College of Agricultural and Environmental Sciences. Her research focuses on understanding and enhancing crop resilience, particularly in rice, through genetic and molecular mechanisms. Key areas include plant immunity against pathogens, climate adaptation, and sustainable agricultural practices. Education and Background: Details on her academic qualifications are not explicitly mentioned in the provided text, but her career trajectory suggests advanced training in plant genetics and pathology. Research Interests: Ronald’s work centers on engineering disease-resistant crops, studying plant-microbe interactions, and developing climate-resilient varieties. Notably, she has contributed to identifying genes like XA21 that confer resistance to bacterial infections and pioneered methods to reduce methane emissions in rice. Her studies also explore the role of sulfated peptides in pathogen virulence and host defense mechanisms. Publications Trends: Her recent articles emphasize molecular mechanisms of plant immunity, genetic engineering applications, and sustainability challenges. Themes include directed evolution of immune receptors, machine learning in genotype-phenotype prediction, and mitigation of agricultural greenhouse gases. Awards and Recognition: While specific awards are not listed here, her leadership in plant genetics and advocacy for evidence-based biotechnology policies reflect significant recognition in her field. Grants and Advising: Ronald has led projects funded by agencies like the U.S. Department of Energy, focusing on bioenergy crops like switchgrass. She collaborates globally on initiatives such as the Rice Protein Tagging Project and the AI Institute for Next Generation Food Systems. Labs and Teams: She directs the Crop Genetics Innovation Lab at UC Davis, fostering interdisciplinary research in crop improvement and sustainable agriculture.

• Plant Genetics
• Crop Improvement
• Plant-Microbe Interactions
• +3 more

Shahid Siddique is an Associate Professor in the Department of Entomology and Nematology at the University of California, Davis. His research focuses on understanding molecular and applied aspects of plant-parasitic nematode interactions with host plants. He aims to develop sustainable strategies to mitigate nematode-induced crop losses through genetic, biochemical, and biotechnological approaches. His lab is particularly interested in host resistance mechanisms, nematode effector proteins, and biocontrol solutions. Education: MSc, Bahauddin Zakariya University, Multan, Pakistan PhD, University of Natural Resources and Life Sciences, Vienna, Austria Habilitation, University of Bonn, Germany Research Interests: Siddique’s work bridges basic and applied research, including cell surface signaling in plant-parasitic nematode interactions, functional characterization of secretory proteins, molecular diagnostics for nematodes, and biocontrol strategies. Current projects explore recombination hotspots in nematode genomes, CRISPR-based resistance engineering, and redox signaling mechanisms. Teaching: General Plant Nematology (NEM100) in Spring 2020 Labs/Teams: The Siddique Lab focuses on translating molecular discoveries into practical pest management solutions. Collaborations involve genomic analysis, proteomics, and field trials to address global agricultural challenges.

• Plant-Nematode Interactions
• Agricultural Entomology
• Molecular Biology
• +3 more

Gregory Michael Peck is an Associate Professor and Director of Undergraduate Studies for the Plant Sciences Major at Cornell University's School of Integrative Plant Science, Horticulture Section. His research focuses on sustainable tree-fruit production, particularly in organic apple systems , cider apple germplasm evaluation , and crop-load management through pollen tube growth modeling . Award-winning educator (2021 Cornell Teaching, Advising & Mentoring Award) 2018 Grower Advocate of the Year (American Cider Association) Active in outreach through field days, extension publications, and social media Peck's work spans tree-fruit physiology , soil health , and mechanization of orchard practices . He co-teaches Cornell's popular cider appreciation course with microbiologist Kathy Arnink, combining apple production science with fermentation expertise. His research explores phenolic development , nitrogen management , and yeast interactions in cider production systems. Recent publications highlight collaborations in rootstock effects , compost applications , and fermentation chemistry . Peck's career has included work in California, Washington, New York, and Virginia, with training spanning horticulture, plant physiology, soil science, and agricultural economics.

• Tree fruit production
• Hard cider research
• Organic agriculture
• +7 more

Manuel Kleiner is an Associate Professor in the Department of Plant and Microbial Biology at North Carolina State University. His research focuses on metabolic and physiological interactions in host-microbe systems, microbial ecology, and the application of metagenomics and high-resolution mass spectrometry to study complex microbiota-host relationships. Research Highlights: Development of metaproteomic techniques to quantify protein expression, analyze community structure via biomass contributions, and track isotope ratios to understand nutrient flow between hosts and microbiota. Creator of the "transductomics" approach to detect horizontal gene transfer via viral transduction in intestinal systems. Collaborates with researchers such as Theriot, Sartor, Sheikh, Ziegler, and Gonzalez. Recent Trends: His 2025 publications emphasize gut microbiome dynamics, maize root-microbe interactions, transplantation biology, and advancements in metaproteomic methodologies. Key themes include dietary impacts on microbiota, stable isotope probing, and synthetic microbial communities for plant and human health. Laboratory Tools: The Kleiner Lab utilizes quantitative metagenomics, high-resolution mass spectrometry, and computational modeling to dissect functional interactions in symbiotic systems across diverse environments, from marine organisms to agricultural crops.

• Host-Microbe Interactions
• Microbial Ecology
• Metaproteomics
• +7 more

Kimberly Keil Stietz is an Assistant Professor in the Department of Comparative Biosciences at the University of Wisconsin-Madison School of Veterinary Medicine. Her research focuses on environmental toxicology, neurotoxicology, and urology, particularly examining how developmental exposure to polychlorinated biphenyls (PCBs) affects urinary function. Education: B.S. in Biology, St. Norbert College (2010) Ph.D. in Comparative Biosciences, University of Wisconsin-Madison (2014) Postdoctoral research in neurotoxicology, University of California-Davis (2015-2019) Stietz's lab investigates the effects of environmental contaminants on the lower urinary tract, emphasizing PCB exposure during development. Using in vitro and in vivo mouse models, the lab studies disruptions in bladder epithelium organization, nerve fiber patterning, inflammation, and peripheral-central nervous system crosstalk. Key projects include analyzing PCB impacts on bladder barrier function, innervation patterns, inflammatory responses, and dorsal root ganglia signaling. Recent publications highlight her work on PCB effects across multiple domains: adult female bladder contractility (2023), prostatic collagen changes (2023), machine learning-aided metabolite analysis (2023, 2022), and developmental PCB exposure links to voiding physiology (2022). Her 2021 studies explored behavioral phenotypes in PCB-exposed mice, dendritic effects, and bladder inflammation, while 2019 work included host-microbe interactions and open-source uroflowmetry tools.

• Environmental Toxicology
• Neurotoxicology
• Urology
• +4 more

Jenn Brophy is an Assistant Professor of Bioengineering at Stanford University, developing technologies for genetic engineering of plants and microbes to address environmental stress resilience and agricultural sustainability. Her lab focuses on synthetic genetic circuits for plant root reprogramming and stress response optimization. B.S. in Bioengineering, UC Berkeley (2010) Ph.D. in Biological Engineering, MIT (2016) Postdoctoral Fellow, Stanford University (Biology) Research spans synthetic biology, plant genetics, and microbiome engineering, emphasizing climate adaptation and sustainable biotechnology. Current projects include: Plant-microbe interaction engineering Stress-responsive biosensors High-throughput genetic tool development Plant cell atlas integration Sustainable laboratory practices Her recent publications highlight advances in recombinase circuits, root architecture engineering, and plant cell mapping, with applications in climate resilience and microbiome design. Collaborators include José Dinneny (Stanford) in plant synthetic biology research.

• Genetic Engineering
• Plant Science
• Synthetic Biology
• +3 more

Shirley Micallef is Professor in the Department of Plant Science & Landscape Architecture at University of Maryland's College of Agriculture and Natural Resources. Her research addresses microbiological safety of fresh produce, focusing on enteric pathogen-plant interactions, irrigation water quality, and sustainable management practices. Current projects examine Salmonella/E. coli dynamics on leafy greens under variable environmental conditions. Research pillars: 1) Preharvest factors affecting pathogen persistence; 2) Metabolomic basis of plant-pathogen interactions; 3) Validation of sanitation technologies; 4) Irrigation water safety. Recent work (2020-2025) emphasizes molecular mechanisms of bacterial colonization and climate impacts on food safety risks. Article trends: 75% focus on pathogen-plant interactions, 60% on leafy greens, 40% on irrigation water/sanitation. Methodological strengths include transcriptomics, metabolomics, and advanced detection platforms.

• Food Safety Microbiology
• Plant-Microbe Interactions
• Agricultural Sustainability
• +1 more

Claudia Gunsch is the Muriel Theodorsen Williams E'46 Distinguished Professor of Civil and Environmental Engineering at Duke University, with secondary appointments in the Nicholas School of the Environment and Department of Biomedical Engineering. She directs the NSF Engineering Research Center for Precision Microbiome Engineering (PreMiEr) and serves as Associate Director for the Duke Microbiome Center. PhD (2004): University of Texas at Austin MS (2000): Clemson University BS (1998): Purdue University Her research focuses on environmental molecular biotechnology , particularly: investigating ecological impacts of emerging contaminants on microbiomes; developing microbiome engineering approaches for bioremediation; studying microbial evolution from contaminant exposure; and creating innovative water treatment technologies. Current projects apply advanced molecular methods to probe environmental microbial processes in bioremediation, contaminant impact assessment, and environmental microbiome modeling. She has been recognized with numerous awards including: NSF Faculty Early Career Development Award (2009), ASCE Huber Prize (2016), and NAE Frontiers of Engineering Fellowship (2011). Her lab has mentored 28 graduate students, 34 undergraduates, and 8 postdoctoral associates. She leads research initiatives funded by NSF, EPA, NIEHS, and industry partners. Editor-in-Chief, Biodegradation journal Member, npj Clean Water and Industrial Biotechnology editorial boards Active in AEESP and ASCE leadership roles

• Environmental Engineering
• Molecular Biotechnology
• Bioremediation
• +3 more

Saumik Basu is an Assistant Professor in the Department of Entomology at the University of Georgia (UGA), based at the Tifton Campus within the College of Agricultural & Environmental Sciences. His research focuses on developing sustainable integrated pest management (IPM) strategies for vegetable crops in South Georgia. He leads the Vegetable Entomology Lab, which investigates pest complexes like whiteflies, diamondback moths, and pepper weevils, along with their interactions with plant pathogens. His work emphasizes molecular ecology, plant defense mechanisms, and the role of abiotic factors (e.g., climate, soil microbiota) in pest management. Education: B.S. in Human Physiology, University of Calcutta M.S. in Biotechnology, Visva-Bharati University Ph.D. in Molecular Plant Virology, Jawaharlal Nehru University Postdoctoral Research: University of Nebraska-Lincoln (UNL) and Washington State University (WSU) Research Interests: Molecular mechanisms of plant-insect interactions Sustainable IPM for vegetable pests Plant defense signaling and phytohormonal crosstalk Impact of soil microbiota on pest-pathogen dynamics Climate change effects on agroecosystems Lab & Collaborations: The lab collaborates with county extension agents, growers, and other research groups to translate findings into practical solutions. Current projects address pest attack order effects on plant defenses and the role of biopesticides like Metarhizium fungus. Graduate students and postdocs work on topics such as soil amendments for pest resistance and vector-borne disease transmission. Advising & Grants: Advises Ph.D. candidate Sourav Pal and M.S. student Rajesh Udavant. Technical staff includes Charles Laney Gruver, an expert in field trials and insect rearing. Undergraduate Alexis Crossgrove supports lab activities. Labs/Teams: Vegetable Entomology Lab (UGA), previously affiliated with Molecular Plant Sciences at WSU.

• Integrated Pest Management (IPM)
• Entomology
• Plant Pathology
• +5 more

Jeff Dangl is the John N. Couch Professor and an HHMI Investigator at the University of North Carolina at Chapel Hill, where he leads research in the Department of Biology. He has been studying plant-microbe interactions since 1989, focusing on two main areas: the plant immune system and the root microbiome. His laboratory is located in the Genome Sciences Building on UNC's historic campus, which is part of the Research Triangle Park area, a leading hub for biotechnology research. Dr. Dangl's research interests span several interconnected areas of plant-microbe interactions. His work examines how plants recognize pathogens through their two-tiered immune system consisting of extracellular pattern recognition receptors and intracellular NLR receptors. He also investigates how the plant immune system shapes the composition and function of the root microbiome. His lab uses Arabidopsis thaliana as a model system to study these interactions at multiple biological scales, from molecular and structural levels to small mesocosms. The research trends in Dr. Dangl's recent publications indicate a strong focus on understanding the molecular mechanisms of plant immune receptors, particularly NLR proteins and their activation pathways. His work increasingly integrates microbiome research with plant immunology, exploring how commensal microbes interact with and potentially modulate the plant immune system. There's also significant emphasis on the structural and functional aspects of immune receptor complexes, as well as the evolutionary dynamics of plant-pathogen interactions. HHMI Investigator John N. Couch Professor Dr. Dangl leads a diverse research group with members from several countries, emphasizing small team approaches to tackle complex problems in plant-microbe interactions. His students and postdocs benefit from access to multiple inputs about their work through this collaborative environment. His laboratory has developed expertise in genomics, ecological modeling, metabolic modeling, and both forward and reverse genetics to address questions about microbiome assembly and function. The Dangl lab maintains strong connections with the broader scientific community through collaborations and participation in major research initiatives. They work within the rich research environment of the Research Triangle Park, which includes UNC, Duke University, North Carolina State University, the North Carolina Biotechnology Center, and numerous life-science companies.

• Plant-microbe interactions
• Plant immune system
• Root microbiome
• +4 more