Find Academic Supervisors

Joshua B. GrossView profile

Associate Professor

• Evolutionary Biology
• Genetics
• Cave Biology
• +3 more

Joshua B. Gross is an Associate Professor in the Department of Biological Sciences at the University of Cincinnati, where he has been conducting research since 2010. His work focuses on evolutionary biology, particularly using the Mexican cavefish ( Astyanax mexicanus ) as a model system to study adaptation to extreme environments. Dr. Gross received his academic training at prestigious institutions: Ph.D. in Organismic and Evolutionary Biology from Harvard University (2005) M.S. with Distinction in Biological Sciences from University of Denver (2001) B.A. in Psychology from Miami University (1995) Dr. Gross's research explores the genetic and developmental basis of evolutionary changes, with a focus on how organisms adapt to extreme environments. His primary model system is the Mexican cavefish ( Astyanax mexicanus ), which exists in both surface-dwelling (with eyes and pigmentation) and cave-dwelling (blind and depigmented) forms. His work integrates quantitative genetics, transcriptomics, and phenotypic analysis to understand the genetic changes underlying cave adaptation, including both regressive traits (like eye loss) and constructive traits (like enhanced taste systems). Analysis of Dr. Gross's recent publications reveals a strong focus on sensory adaptation and craniofacial evolution in cavefish. His work has increasingly incorporated genomic and transcriptomic approaches to understand how cavefish adapt to low-oxygen environments, changes in sensory systems (particularly taste and lateral line), and craniofacial modifications. There's a clear trajectory toward understanding the integration between different biological systems, such as how sensory neuromasts influence skeletal development. Dr. Gross has received several notable awards and recognitions: National Academies Education Fellow in the Life Sciences (2014-2015) Young Investigator Winner, Sigma Xi, University of Cincinnati Chapter (2016) Honorable Mention, Excellence in Doctoral Mentoring Award Nominated for 2018 Dean's Award for Innovative Instruction Young Anatomist's Publication Award from the American Association of Anatomists (2004) As a principal investigator, Dr. Gross has secured substantial funding from the National Science Foundation and National Institutes of Health, including multiple R01 grants from NIH and major awards from NSF. His current projects include "The developmental basis for sensory-skeletal integration: The osteo-inductive role of neuromasts" (NSF IOS-2205928, 2022-2026) and "The constructive evolution of gustation: Molecular, organismal and environmental attributes of taste tuning" (NSF DEB-2343857, 2024-2028). He has mentored numerous undergraduate and graduate students through research projects and has been recognized for his teaching excellence, particularly in Human Genetics. Dr. Gross leads a research laboratory focused on evolutionary and developmental biology at the University of Cincinnati. His team employs a multidisciplinary approach combining field work in Mexican caves, laboratory experiments, genomic analysis, and developmental studies. He has organized international scientific meetings, including the Astyanax International Meeting, fostering collaboration among researchers studying cave-adapted organisms worldwide.

Simone FiorView profile

Lecturer

• Ecological Genetics
• Plant Adaptation
• Population Genomics
• +5 more

Simone Fior is a Lecturer at the Department of Environmental Systems Science , ETH Zürich , focusing on ecological genetics and plant adaptation. Their research integrates genomic, quantitative genetics, and ecological field experiments, particularly on Dianthus (Caryophyllaceae) along altitudinal and climatic gradients. Recent work explores climate-induced range shifts, local adaptation, and genomic responses to environmental changes. Professional experience includes roles at ETH Zürich since 2013 (Senior Assistant, Postdoc) and prior positions at the Edmund Mach Foundation (2009-2012) and University of Insubria (2007-2008). Education spans a PhD in Plant Biology (University of Milan, 2007) and an MSc in Natural Sciences (University of Milan, 2003). Simone co-organizes the Bioinformatics for Adaptation Genomics Winter School . Key research areas include adaptive divergence , polygenic adaptation , climate change biology , and phylogenomics . Articles emphasize genomic selection signatures, functional-structural modeling, and ecological-genetic interactions. Notable collaborations involve Jake Alexander, Alex Widmer, and interdisciplinary teams at ETH Zurich.

• Maize Genetics
• Plant Breeding
• Disease Resistance
• +5 more

Tiffany M Jamann is an Associate Professor in Crop Sciences at the University of Illinois, where she holds the Monsanto Fellowship in Plant Breeding. Her research program focuses on understanding and improving disease resistance mechanisms in maize through integrated genetic, genomic, and phenotypic approaches. Dr. Jamann's work spans multiple disease systems with particular emphasis on foliar diseases such as Northern Leaf Blight and ear diseases like Gibberella ear rot. Her research interests include: Quantitative trait locus (QTL) mapping for disease resistance in maize Development of near-isogenic line populations for gene discovery Comparative studies of resistance mechanisms across different pathosystems Investigation of pattern-triggered immunity in maize Standardization of pathogen inoculation and disease rating methodologies Analysis of Dr. Jamann's recent publications (2023-2025) reveals a strategic integration of traditional plant breeding with cutting-edge genomic approaches. Her work demonstrates increasing use of comparative genomics and transcriptomics to identify host-specificity genes in pathogens while maintaining strong focus on practical breeding applications. A notable trend is her development of standardized methodologies for pathogen inoculation across multiple disease systems, enabling more reliable resistance evaluation. Monsanto Fellow in Plant Breeding Multiple publications featured in news outlets and academic discussions Active research with significant social media engagement (46 X users mentioning her work) Dr. Jamann's research program likely involves extensive collaboration with other plant pathologists and breeders, as evidenced by her numerous co-authored publications. Her work on multi-environment trials suggests substantial field research across different geographical locations. The development of specialized maize germplasm, including near-isogenic lines, indicates long-term investment in genetic resources for disease resistance research. Her laboratory maintains sophisticated capabilities for pathogen characterization, high-throughput phenotyping using fluorescence microscopy, and genetic mapping approaches. The emphasis on both fundamental plant-pathogen interactions and applied crop improvement demonstrates a research program that bridges basic science with practical agricultural outcomes.

Om Parkash DhankherView profile

Professor

• Phytoremediation
• Plant Biotechnology
• Heavy Metal Toxicity Mitigation
• +3 more

Prof. Om Parkash Dhankher is a distinguished Professor at the University of Massachusetts Amherst in the Stockbridge School of Agriculture. His research integrates plant biotechnology, phytoremediation, and climate-resilient crop development, focusing on detoxification of heavy metals, stress tolerance, and metabolic engineering for biofuels. He leads the Dhankher Lab , which pioneered transgenic plants for arsenic phytoremediation and manipulation of glutathione pathways. Education: Ph.D. in Plant Molecular Biology, Durham University (1998) M.Phil. in Biochemistry and Genetics, Kurukshetra University (1998) M.Sc. in Botany, Kurukshetra University (1987) B.Sc. in Medical, Maharishi Dayanand University (1985) Research interests include molecular mechanisms of abiotic stress tolerance, glutathione homeostasis for oxidative stress, arsenic-free crop engineering, and nanotechnology applications in agriculture. His work on sulfur nanoparticles has demonstrated reduced toxicity in rice and Brassica napus, while his Crambe abyssinica and Camelina sativa projects focus on biofuel yield enhancement. He pioneered the first transgenic plant combining arsC and γECS for arsenic remediation. Scientific leadership is reflected through editorial roles in Plant Cell Reports , Frontiers in Plant Sciences , and Environmental Pollution (among others). His accolades include fellowships from CSSA, ASA, ISEB, and ISPP, alongside US patents for metal-resistant plants and oil content engineering. Notably, his research on plant-based nickel extraction featured in the Wall Street Journal (2025) and was highlighted in Nature Biotechnology (2002), earning over $10M in research funding. Publications span 117 peer-reviewed articles and 4 books, including breakthroughs on arsenic detoxification , nanoparticle-plant interactions , and stress-associated proteins . His work has been featured in Science , Nature , PNAS , and ACS Nano , with recent 2025 articles on Camelina nickel tolerance and nanomaterial gene delivery . Collaborations span institutions in India, China, Italy, and Egypt through international outreach programs.

Zechuan LinView profile

Lecturer

• Computational Biology
• Neurogenomics
• Genomics
• +7 more

Zechuan Lin is a Lecturer at the Department of Neurology , Yale School of Medicine, and a member of the Adams Center for Parkinson's Disease Research . He previously held a postdoctoral research fellowship at Harvard Medical School/Brigham and Women's Hospital in 2023 and earned his PhD from Peking University, College of Life Sciences in 2019. His research bridges computational biology , genomics , and plant genetics , focusing on genetic improvement in crops like rice and maize. Key methodologies include heterosis analysis , transcriptomic profiling , and QTL mapping to dissect agronomic traits and environmental adaptation. Lin's publications highlight advancements in hybrid rice breeding , genome-wide selection , and computational tools for allelic imbalance and daylength-sensing models. His work integrates bioinformatics and genetic networks to address both fundamental and applied biological questions. He is affiliated with Scherzer's Lab , which employs interdisciplinary approaches to neurogenomics and personalized medicine for neurological disorders like Parkinson's disease. His contributions to big data analysis and cross-species genetic studies reflect a unique intersection of plant and neurogenomics.

Belay AyeleView profile

Professor

• Plant Physiology
• Functional Genomics
• Molecular Biology
• +4 more

Dr. Belay Ayele is a Professor in the Department of Plant Science at the University of Manitoba's Faculty of Agricultural and Food Sciences. His research focuses on molecular mechanisms of plant hormones, seed biology, and abiotic stress tolerance in cereal crops. Education: PhD from University of Alberta; Postdoctoral Fellow at RIKEN Plant Science Center (Japan) and Iowa State University (USA) Research interests include: Elucidating hormonal regulation of seed dormancy and germination Molecular basis of preharvest sprouting resistance Genomic approaches to improve cereal stress tolerance Transcriptional regulation of plant growth under environmental challenges His recent work explores hormonal crosstalk in cereal crops (wheat, barley), emphasizing ABA/GA balance, jasmonate signaling, and stress adaptation. Publications span plant molecular biology, genomics, and bioenergy applications.

Mohsen Yoosefzadeh NajafabadiView profile

Assistant Professor

• Dry Bean Breeding
• Computational Biology
• Omics-Based Selection
• +5 more

Dr. Mohsen Yoosefzadeh Najafabadi is an Assistant Professor in the Department of Plant Agriculture at the University of Guelph, Ontario Agricultural College. He holds a PhD in Plant Breeding from the University of Guelph (2022), following M.Sc. and B.Sc. degrees from the University of Tehran. His research focuses on dry bean breeding, computational biology, and integrating omics technologies to enhance crop resilience and productivity. Key areas include developing stress-tolerant dry bean varieties, leveraging remote sensing for trait prediction, and optimizing genomic selection methods. He leads the Dry Bean Breeding & Computational Biology Program and has contributed to over 30 peer-reviewed publications since 2017. Education : PhD, Plant Breeding, University of Guelph (2022) M.Sc., University of Tehran B.Sc., University of Tehran Research interests emphasize computational tools development (e.g., AllInOne preprocessing framework), omics-based selection strategies, and non-Mendelian heredity mechanisms. His lab combines machine learning with field phenotyping to address agricultural challenges such as disease resistance and climate adaptation. Collaborative projects include soybean cold stress analysis and cannabinoid profile prediction in cannabis. Publications span genomic approaches to crop improvement, remote sensing applications, and transcriptomic studies. He teaches courses in plant breeding methodologies and actively engages in technology transfer initiatives. Lab activities include developing high-yielding dry bean cultivars resistant to biotic/abiotic stresses and advancing data-driven pipelines for crop breeding. Future work aims to synergize AI with multi-omics data to enhance crop resilience in diverse environments.

Luke O'ConnorView profile

Assistant Professor

• Biomedical Informatics
• Genetics
• Genomics
• +3 more

Luke O'Connor is an Assistant Professor of Biomedical Informatics at Harvard Medical School, affiliated with the Department of Biomedical Informatics. He leads the O'Connor Lab, which focuses on the genetic architecture of common diseases, statistical methods development, and translating genetic associations into biological insight. His work bridges computational and experimental approaches to understand the functional and phenotypic effects of genetic variation. Education: O'Connor earned his Ph.D. in Bioinformatics and Integrative Genomics (BIG) from Harvard Medical School in 2019. He was a Schmidt Fellow/Principal Investigator at the Broad Institute of MIT and Harvard before joining Harvard Medical School. Research Interests: His research emphasizes statistical genetics, functional genomics, and the integration of genetic data with phenotypic outcomes. Key areas include analyzing rare and common genetic variants, developing methods for polygenic risk prediction, and studying the impact of genetic perturbations on cellular and disease mechanisms. Grants: He currently leads an NIH-funded project (R35GM155278) investigating the functional and phenotypic effects of protein-coding genetic variation. This work aims to bridge gaps between genomic data and biological understanding. Labs/Teams: The O’Connor Lab collaborates with institutions like the Broad Institute and engages in interdisciplinary projects to advance precision medicine and genetic discovery.

• Plant Virology
• Molecular Plant Pathology
• CRISPR/CAS9
• +6 more

Hakan Fidan is an Associate Professor in the Department of Plant Protection at Akdeniz University's Faculty of Agriculture in Antalya, Turkey. With over two decades of experience in plant virology and molecular plant pathology, Dr. Fidan leads research focused on viral diseases affecting vegetable crops, particularly tomatoes, peppers, cucurbits, and cereals. He serves as Director of the Seed and Agricultural Biotechnology Research and Application Center at Akdeniz University and has previously directed the Serik Gulsun-Suleyman Sural Vocational School. Dr. Fidan's academic journey includes: Doctorate (2004-2010): Cukurova University, Faculty of Agriculture, Plant Protection Department Postgraduate (2000-2004): Cukurova University, Faculty of Agriculture, Phytopathology/Virology Undergraduate (1992-1996): Cukurova University, Faculty of Agriculture, Plant Protection Department Dr. Fidan's research spans several interconnected areas in plant pathology and virology. His primary focus is on plant viruses affecting economically important crops in the Mediterranean region, with particular emphasis on molecular characterization of viral pathogens, development of resistance mechanisms, and implementation of sustainable disease management strategies. His work integrates molecular biology techniques with traditional plant pathology approaches to address real-world agricultural challenges. His specific research interests include: Plant Virology and Molecular Plant Pathology Development of molecular markers for disease resistance Complete genome molecular biology of plant viruses Plant resistance mechanisms against viral pathogens CRISPR/Cas9 genome editing for developing virus-resistant crops Host-pathogen interactions in vegetable crops Analysis of Dr. Fidan's recent publications reveals a strong focus on emerging viral threats to Turkish agriculture, particularly tomato brown rugose fruit virus (ToBRFV), tomato spotted wilt virus (TSWV), and zucchini yellow mosaic virus (ZYMV). His research demonstrates a strategic progression from basic viral characterization to developing practical solutions through molecular diagnostics, resistance breeding, and genome editing approaches. A notable trend is the increasing application of CRISPR/Cas9 technology in his recent work, reflecting a shift toward genetic solutions for viral disease management. Dr. Fidan has supervised 10 graduate theses across master's and doctoral levels, focusing on viral diseases of economically important crops. His students' research has addressed critical issues including ToBRFV management, TSWV resistance breaking, ZYMV resistance in cucurbits, and molecular characterization of emerging viral pathogens. His research program is supported by multiple projects (14 listed in the metrics), indicating successful grant acquisition for molecular virology research and crop protection initiatives. As Director of the Seed and Agricultural Biotechnology Research and Application Center at Akdeniz University, Dr. Fidan leads a multidisciplinary team focused on agricultural biotechnology and seed science. His research group specializes in plant virology, with expertise spanning molecular diagnostics, host-pathogen interactions, and genetic approaches to disease management. The team maintains strong connections with national and international research institutions, as evidenced by collaborative publications, and works closely with agricultural extension services to translate research findings into practical solutions for Turkish farmers.

Kushal DeyView profile

Assistant Professor

• Statistical Genetics
• Machine Learning in Genomics
• Functional Genomics
• +5 more

Kushal Dey serves as an Assistant Professor in the Computational and Systems Biology Program at Memorial Sloan Kettering Cancer Center (MSKCC), part of the Graduate School of Medical Sciences in partnership with Weill Cornell Medicine. His research integrates statistical and machine learning approaches with genomic data to understand the regulatory architecture of complex diseases. Dr. Dey's research focuses on developing computational methods that integrate human disease genetics with functional genomics data. His work spans immune-related diseases including Alzheimer's and inflammatory bowel disease, as well as heritable cancers like breast and prostate cancer. His lab develops models to prioritize variants, genes, and cell states for disease using genetic, genomic, and perturbation data, with emphasis on causal directed graphs and benchmarking pipelines informed by disease genetics. His recent publications highlight expertise in GWAS, colocalization, spatial transcriptomics, Perturb-seq, and RNA+ATAC multiome analysis. His work frequently appears in top journals like Nature Genetics, with a focus on single-cell multi-omics approaches to understand disease mechanisms at cellular resolution. Scientific Awards: Josie Robertson Investigator (2023–2028) K99/R00 Pathway to Independence Award (NIH/NHGRI) (2022–2026) NIH/NHGRI Early Stage Investigator R01 (2025-2030) NCI P30 CCSG supplement – 'LLMs in cancer research' (2023-2024) Catalog Working Group Co-chair + Disease Focus Group Lead: IGVF consortium (2023-) Dr. Dey mentors several graduate students through the Weill Cornell Graduate School (WGS), including Thahmina Ali, Pretty Garcia, Karthik Guruvayurappan, Louis Liu, Sarthak Tiwari, Berk Turhan, and Harry Zhang. His lab has received multiple grants including the AWS IMAGINE Grant Children's Health Innovation Award 2024-2025 (as Project Co-lead) and PSRP Developmental Funds Awards (2025: Co-lead). The lab actively collaborates with consortia including ENCODE, ADSP, MorPhiC, and IGVF, maintaining strong ties with Columbia University, Stanford University, and Harvard T.H.Chan School of Public Health. The Kushal Dey Lab is part of the vibrant Tri-Institutional Research campus adjacent to Rockefeller University and Weill Cornell Medical College, offering a collaborative environment focused on computational genomics and disease mechanisms.

• Genomic Medicine
• Translational Medicine
• Immunogenetics
• +4 more

Julian Knight is a Professor of Genomic Medicine at the University of Oxford, with affiliations including the Centre for Human Genetics , Merton College , and leadership roles in the NIHR Oxford Biomedical Research Centre and Central and South NHS Genomic Medicine Service . His work bridges clinical practice and research, focusing on translational genomics. Principal Investigator Deputy Director, Centre for Human Genetics Honorary Consultant Physician Tutor and Fellow, Merton College Director, Medical Sciences Division Graduate School Genomic Medicine Theme Lead, NIHR Oxford BRC Research interests include mechanisms of dysregulated immune responses in sepsis , autoimmune disease , and infection . Key contributions involve RNA signature stratification for sepsis outcomes and HLA allele associations in COVID-19 immunogenicity. Current work explores genetic/epigenetic modulators of innate immunity and causal relationships in multi-omic datasets. Recent publications highlight diverse applications of his group’s work: from pleural infection endotyping (2025) to TLR7 variants in severe COVID-19 (2024), with methodological advancements in single-cell demultiplexing (2024) and pathway analysis (2025). Keywords span genomic medicine , immunology , and multi-omic integration . Knight’s leadership extends to clinical implementation of genomics, education (DPhil/MSc programs), and public engagement. Collaborations span institutions including Imperial College , Wellcome Sanger Institute , and Queen Mary University of London .

• Plant Biochemistry
• Specialized Metabolism
• Solanaceae Family
• +4 more

Cornelius Barry is an Associate Professor in the Department of Horticulture at Michigan State University, with affiliations to the Plant Breeding, Genetics and Biotechnology program, AgBioResearch, and the Molecular Plant Sciences Graduate Program. He joined MSU in July 2007 with a 75% research and 25% teaching appointment. Education: PhD and BSc from the University of Nottingham and University College of Wales Current roles: Director of NSF REU Site: Plant Genomics @ MSU His research focuses on the evolution of biochemical diversity within the Solanaceae family , particularly specialized metabolites like terpenoids, flavonoids, and alkaloids. He investigates their roles in plant defense, pollinator attraction, and human applications through genomics, metabolite profiling, and synthetic biology. Recent publications show expertise in alkaloid biosynthesis , trichome chemistry , and metabolic pathway engineering . Key collaborations include teams at Boyce Thompson Institute, Texas A&M, and University of Nottingham. He advises graduate students in Genetics , Biochemistry & Molecular Biology , and Molecular Plant Sciences programs.

Pavel P. KuksaView profile

Academic

• Bioinformatics
• Computer Science
• Functional Genomics
• +5 more

Pavel P. Kuksa is a Research Assistant Professor in the Department of Pathology and Laboratory Medicine, specializing in bioinformatics, computer science, and functional genomics. His work focuses on high-throughput sequencing analysis, chromatin interaction data, and developing scalable software platforms for genomics research.

Joseph CassadyView profile

Professor

• Animal Science
• Food Animal Genetics
• Genomics
• +2 more

Dr. Joseph Cassady serves as the South Dakota Corn Endowed Dean of the College of Agriculture, Food and Environmental Sciences at South Dakota State University (SDSU). Previously, he held the rank of Professor and Head of the Department of Animal Science at SDSU (2013–2022) and North Carolina State University (2001–2013). His research focuses on food animal genetics and genomics, particularly improving production efficiency in swine and beef cattle. Education: B.S. in Animal Science (Iowa State University, 1993), M.S. and Ph.D. in Animal Science (University of Nebraska-Lincoln, 1995 and 1999). Professional roles include past-president of the National Swine Improvement Federation and executive director of the Beef Improvement Federation (2009–2015). Research emphasizes genetic and genomic advancements to enhance livestock productivity, with notable work on heat stress mitigation, swine behavior, and genomic selection in cattle. Awards include the 2019 Harold and Barbara Bailey Award for Academic Leadership and recognition for service to the Beef Improvement Federation. Administrative responsibilities include leading the College of Agriculture, Food and Environmental Sciences, overseeing accreditation processes, and participating in industry boards such as the South Dakota Poultry Industries Association and American Angus Foundation. Key research themes span animal genomics, livestock environmental adaptation, and precision agriculture. Over 150 peer-reviewed publications address topics like swine feeding behavior, cattle genetics, and genomic tools for improving meat quality and production efficiency.

Massimo IorizzoView profile

Professor

• Genetics
• Genomics
• Germplasm Improvement
• +3 more

Dr. Massimo Iorizzo is a Professor in the Department of Horticultural Science at North Carolina State University, specializing in plant genetics and genomics. His research focuses on improving small fruit and vegetable crops through genetic approaches, with particular emphasis on phytochemical content and fruit quality traits. He holds a PhD and MS from the University of Naples 'Federico II' in Italy. His work integrates genomic tools, machine learning, and sensory science to enhance crop traits like texture, nutrient content, and bioactive compound accumulation. Recent projects include developing high-throughput phenotyping systems for cranberry and blueberry, mapping genes controlling carotenoid and anthocyanin pathways, and creating standardized ontologies for blueberry breeding. He collaborates on initiatives like VacciniumCAP and VacCAP to advance genetic resources for berry crops. Key contributions span improving flavor compounds in sweetpotato, understanding epigenetic stress responses, and optimizing protein-based delivery systems for plant nutrients. His research bridges basic genetics with applied breeding, aiming to create consumer- and grower-preferred varieties through interdisciplinary approaches.