Find Academic Supervisors

• Plant-Microbe Interactions
• Plant Immunity
• Symbiosis Signaling
• +5 more

Feng Feng is an Assistant Professor in the Department of Biochemistry and Molecular Biology at Oklahoma State University, where he has been employed since August 2020. His research focuses on understanding how plants interact with microbial communities in their rhizosphere under various environmental conditions. Dr. Feng received his Ph.D. in Plant Molecular Biology from Tsinghua University in Beijing, China (2008-2012), followed by an M.S. in Microbiology and B.S. in Biotechnology from Henan Agricultural University in Zhengzhou, China. Ph.D., Plant Molecular Biology, Tsinghua University, Beijing, China (2008-2012) M.S., Microbiology, Henan Agricultural University, Zhengzhou, China (2005-2008) B.S., Biotechnology, Henan Agricultural University, Zhengzhou, China (2001-2005) Dr. Feng's research interests center on plant-microbe interactions, particularly how plants balance immunity and symbiosis signaling pathways when encountering both pathogenic and beneficial microbes in the rhizosphere. His work examines how environmental conditions affect plant decisions to promote or inhibit microbial colonization, with the goal of developing cropping systems that require less chemical fertilizer and are more resilient to climate change. Using molecular, cell biology, genetic, and biochemical approaches, his lab investigates how abiotic environmental factors regulate plant-microbe interactions and how immunity and symbiosis signaling pathways influence broader microbial communities. Dr. Feng's scholarly output shows a consistent focus on plant immunity and symbiosis mechanisms, particularly involving LysM receptor-like kinases and their role in distinguishing between pathogenic and symbiotic microbial signals. His recent work has increasingly emphasized the ecological context of plant-microbe interactions and the potential applications for sustainable agriculture. Dr. Feng serves as an Associate Editor for Frontiers in Microbiology (since 2022) and has editorial roles with several other journals including Frontiers in Plant Science, Horticultural Plant Journal, and iMeta. Associate Editor, Frontiers in Microbiology (2022-present) Editorial Board, Frontiers in Plant Science (2021-present) Editorial Board, Horticultural Plant Journal (2021-present) Editorial Board, iMeta (2021-present) Dr. Feng actively mentors graduate students and postdoctoral researchers, with his lab currently recruiting Ph.D. students and postdocs interested in plant-microbe interactions. He has secured multiple research grants including funding from the U.S. Department of Agriculture and the Oklahoma Center for the Advancement of Science and Technology (OCAST). His laboratory investigates the molecular mechanisms by which plants regulate their interactions with rhizosphere communities, with particular focus on how environmental conditions influence the balance between immunity and symbiosis signaling pathways.

Anya L. BrownView profile

Assistant Professor

• Community Ecology
• Coral Reef Ecology
• Host-Microbe Interactions
• +4 more

Anya L. Brown is an Assistant Professor in the Department of Evolution and Ecology at the University of California, Davis, based at the Bodega Marine Lab. Her research focuses on the community ecology of marine systems, particularly coral reefs, investigating how host-associated microbes and trait variation influence species resilience to stress, ecological interactions, and adaptive plasticity. Education: B.S. (Brown University, 2009), M.S. in Biology (California State University, Northridge, 2012), Ph.D. in Ecology (University of Georgia, 2018). Postdoctoral Experience: Ewel Postdoctoral Fellow in Tropical Ecology (University of Florida, 2018-2020); Postdoctoral Scholar in Marine Chemistry and Geochemistry (Woods Hole Oceanographic Institution, 2020-2022). Her recent publications highlight microbial dynamics in coral reefs, antibiotic effects on reef microbiomes, and trait-mediated interactions. She emphasizes interdisciplinary approaches, combining molecular tools with observational and experimental studies. The Brown Lab actively engages students in cross-system marine research, prioritizing inclusivity in scientific communities. Key trends in her work include understanding microbial responses to environmental stressors, coral disease mechanisms, and the role of extended phenotypes in reef ecology. These studies span tropical and temperate marine ecosystems, with implications for conservation and restoration. Scientific Awards: Hellman Fellowship 2024-25 Ewel Postdoctoral Fellowship in Tropical Ecology Dr. Brown's lab fosters research across coral reefs and local coastal systems, integrating ecological and microbial perspectives. She advocates for inclusive teaching and research practices while advancing microbial ecology frameworks in marine conservation.

David BurtonView profile

Professor

• Soil Science
• Nitrogen Cycling
• Greenhouse Gas Emissions
• +5 more

Dr. David Burton is a Professor in the Department of Plant, Food, and Environmental Sciences at Dalhousie University's Faculty of Agriculture. He serves as Director of the Centre for Sustainable Soil Management and leads initiatives in soil health, greenhouse gas emissions, and sustainable agricultural practices. His teaching spans undergraduate and graduate courses in soil science, nutrient management, and climate change. Research focuses on microbial metabolism in soil, nitrogen cycling, and the environmental impacts of agricultural practices. He co-founded the Atlantic Soil Health Lab and manages the Greenhouse Gas Analysis Lab. Key affiliations include the Canadian Society of Soil Science (Fellow), Soil Conservation Council of Canada, and Fertilizer Canada's 4R Research Network. Recent work emphasizes soil's role in climate resilience, including presentations on regenerative farming and soil carbon sequestration. He collaborates with government and industry to develop climate-smart soil management policies and tools for nitrogen management optimization. Awards: Fellow of the Canadian Society of Soil Science Labs: Centre for Sustainable Soil Management, Greenhouse Gas Analysis Lab, Atlantic Soil Health Lab Grants: NSERC CREATE Climate Smart Soils

Stuart James KhanView profile

Adjunct Professor

• Water Quality
• Water Recycling
• Chemical Contaminants in Water
• +6 more

Professor Stuart James Khan is an Adjunct Professor in the School of Civil & Environmental Engineering at the University of New South Wales (UNSW). He previously served as Director of the Australian Graduate School of Engineering (AGSE). His research focuses on sustainable urban water management, water treatment processes, and chemical contaminant analysis. Khan holds a PhD in Environmental Engineering from UNSW (2003) and a BSc (Hons 1 in Organic Chemistry) from the University of Sydney (1995). His research interests include water recycling, desalination, disinfection byproduct formation, and the safe management of chemical contaminants. He has advised over 15 PhD students on topics ranging from advanced treatment technologies to risk assessment frameworks. Khan has published extensively, with over 200 journal articles and 18 book chapters, emphasizing interdisciplinary approaches to water quality challenges. Key contributions include advancing membrane bioreactor performance, optimizing water recycling systems, and assessing risks associated with emerging contaminants. His work bridges fundamental science and practical engineering solutions, addressing global water security challenges. Current projects explore wastewater-based epidemiology, PFAS remediation, and climate-resilient water infrastructure. Khan collaborates internationally on water reuse strategies and has contributed to policy frameworks for safe water management. His teaching spans courses like Water & Wastewater Treatment and Environmental Risk Analysis, reflecting his commitment to educating future engineers in sustainable practices.

• Cancer Genetics
• Prostate Cancer
• Genomic Evolution
• +5 more

Colin Cooper is a Professor of Cancer Genetics at the Norwich Medical School, University of East Anglia. He is also a member of the Metabolic Health and Cancer Studies research groups. His work focuses on genomic evolution, tumor microbiome dynamics, and biomarker development for prostate cancer and musculoskeletal health. Cooper’s recent research explores the interplay between cancer genetics and microbial communities, emphasizing their role in prognosis and treatment outcomes. He investigates clonal evolution in tumors, mutational signatures, and non-invasive diagnostic tools like urinary extracellular vesicles. His collaborations span genomics, microbiology, and clinical applications. 2025: Causes of evolutionary divergence in prostate cancer (Genomics, Precision Medicine) 2024: Applications of urinary extracellular vesicles... (Biomarker Development, Liquid Biopsy) 2023: Caution regarding pan-cancer microbial structure (Methodological Considerations, Microbiome Analysis) In 2022, Cooper received the European Urology Oncology SoMe Award for his contributions. His work is frequently cited and has been featured in media outlets globally, highlighting his impact on cancer and aging research.

• Biogeochemistry
• Microbiology
• Soil Science
• +3 more

Ferran Garcia-Pichel is a Regents Professor and Center Director at Arizona State University’s School of Life Sciences, affiliated with the Biodesign Center for Fundamental & Applied Microbiomics, Center for Biodiversity Outcomes, Water Institute, and Global Drylands Center. He holds a PhD in Microbiology from the University of Oregon (1999) and has been a faculty member at ASU since 1999. His research focuses on microbial adaptations in arid environments, including biogeochemical cycling, soil crust formation, and sustainable land restoration. Key interests include cyanobacterial sunscreen compounds (scytonemin), carbonate dissolution mechanisms, and hydrogen production. Teaching responsibilities include advanced microbiology, microbial ecology, and geomicrobiology courses such as MBB 495 Undergraduate Research and BIO 493 Honors Thesis. Awards span from the 2021 Regents Professor distinction to the 2023 Sperry Award for restoration science. His lab explores interdisciplinary approaches to study microbial communities in desert soils, marine intertidals, and atmospheric dust, with applications in climate resilience and biomedicine. Research highlights include biocrust restoration strategies, microbial nitrogen fixation networks, and the role of GABA/Glu signaling in spatial organization. Collaborations address global challenges like fugitive dust mitigation and carbon sequestration. The lab is based at the Biodesign Building B on ASU’s Tempe campus.

Curtis SuttleView profile

Professor

• Marine Virology
• Aquatic Microbiology
• Phytoplankton Ecology
• +6 more

Curtis Suttle is a Professor in the Department of Botany at the University of British Columbia's Faculty of Science. He also holds affiliations with Earth and Ocean Sciences, Microbiology and Immunology, and the Institute for Oceans and Fisheries. His research focuses on marine virology and the ecological roles of viruses in aquatic ecosystems, particularly their impact on phytoplankton and microbial communities. Dr. Suttle received his B.Sc. and Ph.D. from UBC, was a Coastal Marine Scholar at SUNY StonyBrook (1987-88), and served as Assistant/Associate Professor at the University of Texas at Austin (1988-96) before returning to UBC. His research program investigates the biology and ecology of viruses that infect microalgae and cyanobacteria. Key areas include discerning viral effects on primary productivity, isolating novel marine viruses, developing molecular identification methods, and studying viral distribution patterns. His work has revealed that viruses can occur in seawater at concentrations exceeding 10 5 ml -1 , with cyanophage concentrations reaching 10 6 infectious units ml -1 in coastal waters. Dr. Suttle's team has developed PCR primers specific for viral DNA polymerase genes, showing these viruses belong to a single family related to herpes viruses. Recent publications show a strong focus on marine viral ecology, with particular attention to oyster microbiomes, viral taxonomy, and the role of viruses in marine ecosystems. His research spans from coastal environments to the deepest ocean trenches, examining viral diversity across environmental gradients and investigating viral impacts on carbon cycling and marine food webs. Dr. Suttle leads an active research group with several post-doctoral associates, research scientists, and graduate students. His team conducts field work at multiple locations including the Naica Mine in Mexico, Pavilion Lake in British Columbia, Saanich Inlet, and the Strait of Georgia. Current projects include collaborations with the Hakai Institute, Line P Research Cruise, and CASES (Canadian Arctic Shelf Exchange Study). His laboratory has made significant contributions to understanding viral roles in marine ecosystems, particularly through expeditions to extreme environments like the Naica crystal caves and deep ocean trenches. Ongoing research explores viral impacts on microbial community structure, carbon cycling, and ecosystem function across diverse marine habitats.

Shahid SiddiqueView profile

Associate Professor

• Plant-Nematode Interactions
• Agricultural Entomology
• Molecular Biology
• +3 more

Shahid Siddique is an Associate Professor in the Department of Entomology and Nematology at the University of California, Davis. His research focuses on understanding molecular and applied aspects of plant-parasitic nematode interactions with host plants. He aims to develop sustainable strategies to mitigate nematode-induced crop losses through genetic, biochemical, and biotechnological approaches. His lab is particularly interested in host resistance mechanisms, nematode effector proteins, and biocontrol solutions. Education: MSc, Bahauddin Zakariya University, Multan, Pakistan PhD, University of Natural Resources and Life Sciences, Vienna, Austria Habilitation, University of Bonn, Germany Research Interests: Siddique’s work bridges basic and applied research, including cell surface signaling in plant-parasitic nematode interactions, functional characterization of secretory proteins, molecular diagnostics for nematodes, and biocontrol strategies. Current projects explore recombination hotspots in nematode genomes, CRISPR-based resistance engineering, and redox signaling mechanisms. Teaching: General Plant Nematology (NEM100) in Spring 2020 Labs/Teams: The Siddique Lab focuses on translating molecular discoveries into practical pest management solutions. Collaborations involve genomic analysis, proteomics, and field trials to address global agricultural challenges.

Vijini MallawaarachchiView profile

Research Fellow

• Metagenomics
• Bioinformatics
• Bacteriophages
• +3 more

Vijini Mallawaarachchi is a Research Fellow in Bioinformatics at Flinders University's Flinders Accelerator for Microbiome Exploration (FAME). His research focuses on developing computational methods for metagenomic analysis, particularly viral genome recovery from metagenomes. He holds a PhD in Computer Science from the Australian National University (2022) and a BSc in Computer Science and Engineering (Honours) from the University of Moratuwa, Sri Lanka (2018). Education: Doctor of Philosophy (Computer Science), Australian National University, 2018–2022 Bachelor of Science (Computer Science & Engineering, Honours), University of Moratuwa, 2014–2018 Research Interests: Metagenomics, algorithms for genome recovery, bacteriophage discovery, machine learning applications in bioinformatics, and software engineering for computational biology. His work emphasizes leveraging assembly graphs and computational models to analyze microbial communities and viral genomes. Grants & Awards: 2025: National Computational Merit Allocation Scheme Grant (Co-CI) - A$412,000 2025: ARC Discovery Projects Grant (Co-CI) - A$685,781 2024: Outstanding PhD Thesis Award (ABACBS) 2023: Australian Society for Microbiology Early Career Award Professional Engagement: Active member of ISMB, ISVM, ACM, IEEE, ABACBS, ASM, and RSE AU/NZ. Supervises HDR and Honours students in bioinformatics and computational biology. Labs & Tools: Leads projects at FAME, developed tools like GraphBin, Phables, and ConDiGA for metagenomic analysis. Collaborates on open-source initiatives like the cogent3 Python APIs.

Mark EppingerView profile

Associate Professor

• Microbial Genomics
• Bioinformatics
• Infectious Diseases
• +5 more

Mark Eppinger, Ph.D., is an Associate Professor in the Department of Molecular Microbiology and Immunology at The University of Texas at San Antonio (UTSA), within the College of Sciences. His research is centered on microbial genomics and bioinformatics, with a focus on understanding infectious diseases caused by bacterial pathogens such as Yersinia pestis , Vibrio cholerae , and Escherichia coli O157:H7. Department: Molecular Microbiology and Immunology School: College of Sciences University: The University of Texas at San Antonio Email: Mark.Eppinger@utsa.edu Phone: 210-458-6276 Lab: BSE 3.404 Dr. Eppinger earned his Ph.D. in Microbial Genetics from the Max-Planck Institute for Developmental Biology and the University of Tübingen, Germany, and a B.S. in Biology from the same institution. Ph.D. in Microbial Genetics, Max-Planck Institute for Developmental Biology, University of Tübingen B.S. in Biology, University of Tübingen His research program applies microbial genomics and bioinformatics to investigate the evolutionary and ecological dynamics of bacterial pathogens. He focuses on phylogenomics, genome plasticity, virulence determinants, and host-pathogen interactions. His lab generates genomic data to understand how genetic variation influences transmissibility, infectivity, and disease outcomes in major public health threats. The available publications reflect a consistent focus on the genomics of foodborne and epidemic bacterial pathogens. Both book chapters deal with the genomic analysis of Escherichia coli and Yersinia , emphasizing evolutionary patterns, virulence mechanisms, and molecular epidemiology. These works highlight his expertise in integrating genomic data with public health applications. Dr. Eppinger has mentored a wide range of students, including doctoral candidates, postdoctoral researchers, master's students, and undergraduates. His lab has hosted international exchange students and Fulbright Fellows, indicating a collaborative and globally engaged research environment. He leads the Eppinger Lab at UTSA, which is part of the South Texas Center for Emerging Infectious Diseases (STCEID). The lab conducts cutting-edge genomic research on emerging pathogens and contributes to the development of diagnostic and therapeutic strategies to reduce human morbidity.

Martin KaltenpothView profile

Professor

• Insect Symbiosis
• Evolutionary Ecology
• Chemical Ecology
• +2 more

Martin Kaltenpoth serves as Director at the Max Planck Institute for Chemical Ecology in Jena since 2020 and Professor for Evolutionary Ecology at Johannes Gutenberg University of Mainz since 2015. Previously, he led the Research Group Insect Symbiosis at the MPI for Chemical Ecology from 2009 to 2015. Education: PhD in Biology (summa cum laude), University of Würzburg, 2006 Diploma in Biology (with honors), University of Würzburg, 2003 His research centers on insect-bacterial symbioses , investigating evolutionary, ecological, and chemical dimensions of host-microbe interactions. Key foci include nutritional and defensive symbiosis in beetles, genomic adaptations of symbiotic bacteria, and chemical mediation of symbiotic relationships. His work bridges entomology, microbiology, and chemical ecology to unravel coevolutionary mechanisms. Analysis of recent publications reveals dominant trends in beetle-microbe systems, emphasizing symbiont roles in cuticle synthesis, antifungal defense, and host-plant adaptation. His studies frequently employ genomic, biochemical, and experimental approaches across diverse insect lineages. No scientific awards were documented in the source material. While specific advisees and grants remain unlisted, his leadership of research groups and dual academic appointments indicate active supervision of graduate researchers and externally funded projects in symbiosis evolution. Currently directing research at the Max Planck Institute, Kaltenpoth advances understanding of symbiotic systems with implications for evolutionary theory and sustainable pest management strategies.

Alexander J SundermannView profile

Assistant Professor

• Epidemiology
• Infection Prevention
• Pathogen Genomic Surveillance
• +3 more

Alexander J Sundermann serves as an Assistant Professor in the Department of Epidemiology at the University of Pittsburgh School of of Public Health. His research focuses on leveraging pathogen genomic surveillance and machine learning to revolutionize infection prevention practices in healthcare settings, with demonstrated impacts on outbreak detection accuracy and intervention speed. Education: 2013: BS in Microbiology, University of Rochester 2014: MPH in Infectious Diseases and Microbiology, University of Pittsburgh 2022: DrPH in Epidemiology, University of Pittsburgh Dr. Sundermann's work centers on whole-genome sequencing of pathogens to detect healthcare-associated transmission invisible to traditional methods. His research demonstrates how genomic surveillance reveals hidden outbreaks of vancomycin-resistant Enterococcus (VRE) and mucormycosis, directly linking colonization to clinical outcomes like ICU admission and mortality. He pioneers machine learning tools that analyze electronic health records to identify transmission routes, creating more efficient outbreak investigation frameworks across hospital networks. His publication portfolio (2019-2025) shows a clear trajectory toward integrated genomic-clinical surveillance systems, with recent work quantifying clinical and economic impacts while addressing implementation barriers. This interdisciplinary approach bridges epidemiology, genomics, and data science to transform infection prevention protocols. Scientific Awards: No awards listed in available information. Advising and Grants: While specific advisees and grant details aren't provided, his multi-institutional collaborations suggest active mentorship within genomic epidemiology research teams. His work with the National Healthcare Safety Network indicates engagement with major public health surveillance infrastructure. Labs and Teams: Dr. Sundermann leads cross-functional teams including microbiologists, data scientists, and clinicians across multiple healthcare systems. His UPMC outbreak investigations and national linen contamination studies demonstrate operational frameworks for real-time genomic surveillance implementation in complex hospital environments.

Vernita GordonView profile

Associate Professor

• Biophysics
• Microbiology
• Biofilm Mechanics
• +5 more

Vernita Gordon is an Associate Professor in the Department of Physics at the University of Texas at Austin (since 2018), previously serving as an Assistant Professor there from 2010 to 2018. She holds a Ph.D. in Physics from Harvard University (2003) and a B.Sc. in Physics and Mathematics from Vanderbilt University (1997). Her research focuses on understanding how physical characteristics like mechanics and spatial structure influence bacterial biofilms, particularly their interactions with the immune system and resistance to antibiotics. She has pioneered techniques such as laser trapping to manipulate biofilm structures and studies radiation effects on bacteria like Deinococcus radiodurans . Education: Ph.D. in Physics, Harvard University (2003) B.Sc. in Physics and Mathematics, Vanderbilt University (1997) Research Interests: Dr. Gordon’s work integrates biophysics, microbiology, and materials science to explore biofilm mechanics, bacterial mechanosensing, and radiation biology. Key areas include: How biofilm mechanics resist immune clearance and antibiotic treatment Role of surface stiffness and shear stress in biofilm initiation Radiation resistance mechanisms in Deinococcus radiodurans Development of tools like laser trapping to study biofilm structure Key Achievements: Recipient of the Elizabeth B. Gleeson Professorship (2023) and Texas Mindset Initiative Fellowship (2023) Provost’s Teaching Fellow (2020–2024) and multiple teaching awards Funded by NSF, NIH, and Cystic Fibrosis Foundation Published over 60 peer-reviewed articles, including in Nature , PNAS , and Biophysical Journal Advising & Outreach: She mentors graduate students in Physics, Microbiology, and Biomedical Engineering, emphasizing interdisciplinary training. Her group actively recruits undergraduates and collaborates with industry partners like Solvay and the College of Pharmacy. Outreach includes lesson plans for high school STEM education and community science initiatives. Labs & Collaborations: Her lab uses advanced microscopy, microrheology, and computational modeling. Key collaborations include work with the Contreras Lab (UT Austin Chemical Engineering) on radiation-resistant bacteria and the Raizen Lab (UT Austin Physics) on self-sterilizing surfaces.

Jennifer DyView profile

Professor

• Machine Learning
• Computer Vision
• Explainable AI
• +2 more

Jennifer Dy is a Distinguished Professor at Northeastern University with joint appointments in Electrical and Computer Engineering and Khoury College of Computer Sciences. As Director of AI Faculty at the Institute for Experiential AI, she leads research in machine learning, computer vision, and explainable AI. Her work spans biomedical applications (COPD phenotyping, neuroimaging) and fundamental algorithms (active learning, continual learning). She holds a PhD from Purdue University and is an AAAI Fellow. Research Focus: Dy develops methodologies for robust and interpretable machine learning, including techniques for model stability in continual learning, dependency-aware active learning, and axiomatic explanation frameworks. Her applied research advances diagnostic tools using Raman spectroscopy, CT imaging, and multi-omics biomarker discovery. Awards: Recognized with the NSF CAREER Award, Faculty Research Team Award, and AAAI Fellowship for contributions to unsupervised learning and medical AI. Publication Trends: Recent articles demonstrate strong cross-disciplinary integration, combining theoretical advances in explainability/robustness with applications in healthcare, wireless systems, and particle physics. Methodological themes include optimal transport theory, probabilistic modeling, and transformer architectures.

Anton LavrinienkoView profile

Lecturer

• Microbiology
• Environmental Health
• Biotechnology
• +4 more

Dr. Anton Lavrinienko is a Lecturer at the Department of Health Sciences and Technology at ETH Zürich, affiliated with the Biotechnology of Food Systems group. His research focuses on microbiome studies, environmental health, and the impact of pollution and radiation on ecosystems and microbiota. He is based in Zurich, Switzerland, and teaches the course Applied Bioinformatics: Microbiomes (Autumn Semester 2025). His work integrates molecular biology, ecology, and public health to address challenges in food systems and environmental sustainability. Research interests include microbial diversity in polluted environments, radiation effects on wildlife, and the application of genomics to biodiversity conservation. He collaborates on projects such as the European Reference Genome Atlas and studies microbial responses to anthropogenic contamination in urban and natural ecosystems. Dr. Lavrinienko’s studies often involve fieldwork in regions like Chernobyl, investigating how chronic radiation and metal pollution alter microbiota and organismal health. His findings contribute to understanding ecological resilience and human health implications of environmental stressors. He emphasizes open data standards and FAIR principles in microbiome research.