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Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

• Bioinformatics
• Machine Learning
• Deep Learning
• +5 more

Konstantinos Kalogeropoulos is an Assistant Professor at the Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU), leading research at the Cell Diversity Lab. His work bridges proteomics, computational biology, and snake venom research. Current projects: "The Proteomic Landscape during Influenza Infection" (2022-2025) Supervisor for PhD projects on protease network rewiring in psoriasis and wound exudate degradomics Research interests include: Proteomic analysis of inflammatory diseases Snake venom toxin structure prediction Extracellular matrix biomechanics De novo peptide sequencing algorithms Computational modeling of protease networks Recent article trends demonstrate his work in • Database-free proteomics (InstaNovo/InstaNexus) • Snake venom pathophysiology (V-ToCs clustering) • Inflammatory disease biomarkers (psoriasis, impaired healing) • Extracellular matrix mechanics (fibronectin tension, gut inflammation) Advising: Supervises PhD students Polhaus, C. J. M. and Haack, A. M., focusing on protease networks and wound healing.

• Proteomics
• Snake Venom Research
• Protein Structure Prediction
• +3 more

Anders Krogh is a Professor at the Department of Computer Science, University of Copenhagen, and also holds a position at the Department of Public Health in the Section for Health Data Science and AI. He serves as the head of the Center for Health Data Science (HeaDS) in the Faculty of Health and Medical Sciences. Previously, he was affiliated with the Department of Biology at the University of Copenhagen until 2020. Dr. Krogh earned his PhD in theoretical physics but transitioned into machine learning and bioinformatics during his doctoral studies. His research spans both theoretical foundations and practical applications in these fields. He is particularly renowned for his pioneering work on hidden Markov models for biological sequences, which has had significant impact in computational biology. In recent years, Krogh's research has focused on deep generative models applied to gene expression data and other biomedical applications. His work bridges computer science with healthcare, developing AI-driven approaches for precision medicine, cancer diagnostics, and analysis of complex biological systems. His current research integrates machine learning with quantum computing applications in biomolecular modeling. Analysis of his recent publications reveals a strong trend toward applying artificial intelligence to healthcare challenges, particularly in rare diseases, cancer diagnostics, and personalized medicine. His work increasingly incorporates federated learning approaches to address privacy concerns while enabling collaborative research across institutions. There's also a growing emphasis on quantum computing applications in biomolecular modeling and drug discovery. As head of the Center for Health Data Science, Krogh leads interdisciplinary research efforts that bring together computer scientists, medical researchers, and clinicians. His team develops novel computational frameworks like MOSAIC for multimodal analysis of rare cancers and multiDGD for multi-omics data integration. These tools are designed to translate AI innovations into clinical practice while addressing the unique challenges of medical data.

• Machine Learning
• Bioinformatics
• Deep Generative Models
• +3 more

Kevin Crowston is a Distinguished Professor of Information Science at Syracuse University's School of Information Studies (iSchool), where he examines how information technology enables new organizational forms through empirical studies, theoretical modeling, and system design. His work focuses on coordination-intensive processes in virtual settings, with significant contributions to citizen science, data science teamwork, and journalism transformation. Education A.B. in Applied Mathematics (Computer Science), Harvard University, 1984 Ph.D. in Information Technologies, MIT Sloan School of Management, 1991 Research Focus : Crowston investigates coordination mechanisms in human-AI collaboration, particularly through projects like Gravity Spy (combining citizen scientists with machine learning for gravitational wave analysis) and journalism innovation (e.g., ReelFramer for AI-assisted news-to-video translation). His framework addresses how intelligent systems reshape work design, knowledge production, and team dynamics in scientific and media contexts. Publication Trends : Recent articles (2024-2025) reveal three dominant threads: (1) Human-AI co-creation in journalism (deskilling/upskilling dynamics, creative tool adoption), (2) Citizen science evolution with AI (co-learning systems, lexical entrainment), and (3) Socio-technical governance of intelligent machines (control-accountability alignment, project archetypes). These reflect his central inquiry into how technology reconfigures work structures. Scientific Recognition ACM Distinguished Speaker Research Leadership : Crowston currently directs two major NSF initiatives: (1) HCC grant 21-06865 on intelligent support for non-expert information navigation, and (2) FW-HTF grant 21-29047 exploring human-technology collaboration in journalism. He spearheaded a Research Coordination Network establishing socio-technical frameworks for work in the age of intelligent machines, culminating in a special issue of Information, Technology & People . Collaborative Infrastructure : He co-leads the Gravity Spy citizen science ecosystem (integrating LIGO physicists, machine learning systems, and volunteers) and serves as co-editor-in-chief of Information, Technology and People , previously editing ACM Transactions on Social Computing . His MIDST platform research advances stigmergic coordination for data science teams.

• Information Systems
• Human-Computer Interaction
• Virtual Organizations
• +5 more

Desmond Elliott is an Associate Professor in the Natural Language Processing section at the Department of Computer Science, University of Copenhagen (UCPH). His research focuses on multimodal and multilingual models with specific emphasis on vision-language integration and tokenization-free NLP approaches. He teaches Bachelor and Master's level courses including Advanced Topics in Natural Language Processing (since 2019), Grundlæggende Data Science (since 2023), and previously Data Science (2021-2023). His research interests center on building and understanding multimodal and multilingual models , particularly exploring vision and language interactions through billion-parameter systems. Current work investigates cultural representation disparities in vision-language models, parameter-efficient captioning, and multimodal distributional semantics across diverse domains including food culture and medical imaging. His methodology emphasizes real-world applicability in non-English contexts and ethical considerations in multimodal systems. Elliott's recent publications (2025) demonstrate leadership in multimodal NLP, with significant contributions to vision-language pretraining, multilingual evaluation frameworks, and clinical NLP applications. His work spans theoretical advancements in model architectures and practical implementations addressing challenges in low-resource languages and domain adaptation. Best Long Paper Award at EMNLP 2021 Best Poster Award at COLING 2019 As an active educator, Elliott contributes to courses on Fair and Transparent Machine Learning and previously taught Information Retrieval. His research collaborations span international institutions with particular focus on European and non-English language contexts, reflecting UCPH's recognition as Europe's #1 institution for HCI research over the past decade.

• Multimodal Learning
• Multilingual NLP
• Vision-Language Models
• +4 more

Francisco Camara Pereira is a Professor and Head of Section at the Department of Technology, Management and Economics at the Technical University of Denmark (DTU). His research focuses on Intelligent Transportation Systems, Machine Learning, and Data-Driven Decision-Making in transportation contexts. He actively contributes to advancing transportation science through interdisciplinary approaches combining simulation, optimization, and AI techniques. His work addresses challenges in public transport analysis, charging infrastructure planning, and multimodal demand prediction. Recent projects include developing graph-based optimization methods for electric vehicle networks and causal discovery frameworks for transportation systems. He supervises multiple PhD students in areas like federated learning for cyclist safety, causal graph neural networks, and socially aware AI models. Key contributions include publications on smart card data analysis for travel surveys, stochastic infrastructure expansion models, and transfer learning for bike-share systems. His research aligns with UN Sustainable Development Goals related to sustainable cities and innovation. Dr. Pereira collaborates internationally on transportation policy and infrastructure projects. His lab focuses on translating theoretical advancements into practical solutions for urban mobility challenges.

• Intelligent Transportation Systems
• Machine Learning
• Active Learning
• +3 more

Erwin Schoof is an Associate Professor at the Department of Biotechnology and Biomedicine , Technical University of Denmark. He leads the Cell Diversity Lab and focuses on advancing proteomics and mass spectrometry technologies. Expertise in single-cell proteomics , stem cell niches , and bioinformatics . Active in myelofibrosis and leukemia research , with applications in UN Sustainable Development Goals . Research Trends from 2025–2024 include: Machine learning-driven peptide sequencing (InstaNovo, InstaNexus). Single-cell resolution tools for mapping hematopoietic stem cells and tumor microenvironments . Biomarker discovery in chronic diseases and respiratory conditions . Supervision : Mentors multiple PhD students on single-cell proteomics , omics data analysis , and biotherapeutic production . Labs & Collaborations : Collaborates with international teams on plasma proteomics , 3D bioengineering , and advanced mass spectrometry workflows .

• Proteomics
• Mass Spectrometry
• Single-Cell Analysis
• +7 more

Andrea Burattin is an Associate Professor at the Department of Applied Mathematics and Computer Science, Technical University of Denmark. His work bridges formal methods and practical process analysis, focusing on process mining, business process management, and hybrid modeling techniques. He actively contributes to research in healthcare process optimization, streaming data analysis, and system verification through Petri nets and CCS transformations. UN Sustainable Development Goals: Poverty eradication, environmental protection, and prosperity for all (via process optimization) Active projects: Immersive Process Mining (2024-2027), Usability and Understandability of Hybrid Process Models (2018-2021) His research explores large language model integration with process mining, proposing frameworks like Tiramisù for multi-faceted process visualization and PN2CCS for formal model translation. Recent work emphasizes real-time monitoring, conformance checking, and IoT-driven process analytics. Key trends in his publications include: 1) Streaming process mining pipelines (2022-2025); 2) LLM-plan generation frameworks (2024); 3) Formal verification techniques (Petri nets, CCS); 4) Healthcare process modeling (2019-2023); 5) Behavioral pattern analysis in process compliance. Scientific Awards Best Demo Award (2022, 2016) Best Process Mining Dissertation Award (2014) Best Workshop Paper (EDBA and PODS4H, 2023) As advisor, he supervises PhD projects on process mining and hybrid modeling. His editorial roles include Information Systems reviewer (2024-2025) and past editor for Engineering Applications of AI (2022-2023). Collaborations span Denmark, Italy, and the Netherlands.

• Process Mining
• Business Process Management
• Petri Nets
• +6 more

Faisal Mahmood is a Professor at the Department of Clinical Research, University of Southern Denmark (SDU), with dual affiliations at Odense University Hospital (OUH). He is a key member of the Research Unit of Oncology and the AgeCare - Academy of Geriatric Cancer Research in Odense, where he leads advanced research in imaging biomarkers for radiotherapy response. His work bridges clinical oncology and medical physics, with a focus on improving cancer treatment through innovative imaging techniques. Research Interests: Dr. Mahmood's research centers on imaging biomarkers of response to radiotherapy , with expertise in radiation therapy , medical image processing , and diffusion MRI . His work explores tumor microstructure using time-dependent diffusion imaging and MRI-Linac systems, with applications in glioblastoma and pancreatic cancer. He is actively involved in developing low-dose, adaptive radiotherapy protocols to enhance treatment precision. The recent trend in his publications shows a strong focus on adaptive radiotherapy , quantitative MRI , and biologically guided treatment . His work integrates engineering principles with clinical oncology, emphasizing reproducibility and feasibility in clinical settings. Topics such as automatic beam gating, diffusion coefficient discrepancies across scanners, and histological validation of imaging biomarkers reflect his translational research approach. Scientific Awards and Recognition: Research supported by Knæk Cancer foundation Advising and Grants: Dr. Mahmood has supervised at least 3 academic works, including PhD-level research. His projects are supported by institutional and external funding, notably from cancer research foundations. He actively collaborates with multidisciplinary teams across Denmark and internationally, contributing to both national and global oncology research initiatives. Labs and Research Teams: He is affiliated with the Research Unit of Oncology and the AgeCare - Academy of Geriatric Cancer Research at OUH, where he contributes to cutting-edge research in geriatric oncology and advanced radiotherapy. His team integrates clinical data, imaging physics, and machine learning to develop personalized treatment strategies for cancer patients.

• Medical Image Processing
• Radiation Therapy
• Imaging Biomarkers
• +7 more

Ole Winther is a Professor at the Department of Biology, University of Copenhagen, specializing in Computational and RNA Biology. He also holds a joint appointment as Professor at DTU Compute, Technical University of Denmark. His research bridges machine learning, bioinformatics, and natural language processing with applications in biological sequence analysis, transcriptomics, and health informatics. Education: 1998: PhD in Physics, University of Copenhagen 1994: Master of Science in Physics, University of Copenhagen Winther's research focuses on developing advanced machine learning methodologies for biological applications. He has pioneered protein language models for sequence analysis (DeepLoc, SignalP, DeepTMHMM), interpretable deep learning for RNA subcellular localization, and benchmarking frameworks for DNA language models. His work spans latent variable models, variational inference, diffusion models, and novel architectures for deep generative modeling, with increasing emphasis on practical healthcare applications including rare disease diagnosis through findzebra.com and medical question answering with large language models. Scientific Recognition: ELLIS Fellow (2021) Head of ELLIS Copenhagen Unit H-index of 61 (Google Scholar, May 2023) 19,700+ citations (Google Scholar, May 2023) Winther has supervised 25+ PhD students to completion with 7 currently in progress, along with over 100 master's projects. He frequently serves as PhD opponent and committee chairman across European institutions. His research is supported by substantial funding including multiple Novo Nordisk Foundation grants totaling over 60 million DKK for the Center for Basic Machine Learning Research in Life Science and CAZAI projects, plus significant funding from the Danish Independent Research Fund. He leads an active research group developing cutting-edge machine learning approaches for bioinformatics and NLP challenges. Winther co-founded two spin-out companies: findzebra.com (2014, 2018), a search engine for rare diseases, and raffle.ai, an NLP startup for enterprise search. He initiated DTU's popular BSc in AI and Data program and teaches the highly enrolled MSc course in Deep Learning (450+ students) and PhD course in Bayesian Data Analysis.

• Machine learning methods development
• Bioinformatics
• Biological sequence analysis
• +8 more

Johannes Bjerva is a Full Professor at Aalborg University's Department of Computer Science (Campus Copenhagen), leading the Copenhagen branch and conducting interdisciplinary NLP research integrating linguistic typology. His work focuses on low-resource languages, language model security, and societal AI impact. PhD (University of Groningen, 2017): Thesis on multitask/multilingual lexical modeling M.A. & B.A. in Computational Linguistics (Stockholm University) Research interests span linguistically-informed NLP , language model security , and low-resource language technology . Current projects include the DFF Sapere Aude grant (2025) for language model detection security and the LM2-SEC project (2025–2030). His 2024 ACL paper on embedding inversion security and 2024 EMNLP paper on typological diversity exemplify recent work. Scientific awards include: 2021: Teacher of the Year (AAU Computer Science) 2019: Google Cloud research credits 2022: Carlsberg Semper Ardens (5M DKK) 2024: Novo Nordisk Data Science grant (~10M DKK) Supervision includes 8 PhD students across projects like CreoleVal and HiFi-KPI . He serves on the Industrial Researcher Committee at Innovation Fund Denmark and is a member of Det Unge Akademi (2023–2028).

• Natural Language Processing
• Artificial Intelligence
• Linguistic Typology
• +5 more

Professor Andreas Kjær (MD, PhD, DMSc) serves as Head of the Cluster for Molecular Imaging (CMI) at the Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen. He is also Chief Physician at Rigshospitalet and co-founder of Minerva Imaging, a CRO established in 2011. University of Copenhagen Department of Biomedical Sciences Cluster for Molecular Imaging Rigshospitalet His research focuses on translational molecular imaging with PET/PET-MRI and targeted radionuclide therapies (theranostics) for precision medicine in cancer, cardiovascular, and inflammatory diseases. CMI bridges basic research to clinical implementation, leveraging interdisciplinary expertise in physics, chemistry, biology, and medicine to develop imaging agents and therapies. Recent publications highlight advancements in theranostics , PET/CT , hyperpolarized MRI , and radiopharmaceutical development . Collaborations span oncology, cardiology, and nuclear medicine, with clinical trials in neuroendocrine tumors and metabolic imaging. Current affiliations include University of Copenhagen (Professor, Department of Biomedical Sciences) Rigshospitalet (Chief Physician)

• Molecular Imaging
• Positron Emission Tomography (PET)
• Cancer
• +4 more

Tuukka Ruotsalo serves as Associate Professor in the Machine Learning Section at the Department of Computer Science, University of Copenhagen. His research bridges human cognition with computational systems through brain-computer interfaces and physiological computing. As Academy Research Fellow at University of Helsinki (2019-2024), he maintained dual institutional affiliations while leading cutting-edge work in neuro-linguistic modeling and affective relevance. His research focuses on brain-computer interfaces for information retrieval , where he pioneers methods to decode cognitive states from neural signals to improve search systems. Key areas include affective relevance modeling that integrates emotional states into search algorithms, and neuro-linguistic reconstruction that translates brain activity into language. His work on fairness-relevance tradeoffs in recommender systems established Pareto frontier evaluation frameworks now widely adopted in ethical AI research. Recent publications demonstrate how physiological signals like EEG and galvanic skin response can create more adaptive human-information interaction systems. Ruotsalo's scientific recognition includes the prestigious Academy Research Fellow position. His publications in IEEE Transactions on Human-Machine Systems , Journal of the Association for Information Science and Technology , and Communications Biology reveal growing interdisciplinary impact. His advising spans cognitive neuroscience and machine learning students, with notable collaborations across the SCIENCE AI Centre. Current projects include the TreeSense initiative for remote sensing of global tree resources and development of quantum-inspired neural architectures. His lab leverages the department's powerful compute cluster for large-scale physiological data analysis.

• Brain-Computer Interfaces
• Human-Information Interaction
• Recommender Systems
• +4 more

Ilias Chalkidis is an Assistant Professor specializing in Natural Language Processing at the Department of Computer Science, University of Copenhagen. He is actively affiliated with the Natural Language Processing research section, contributing to both theoretical and applied advancements in the field. His research spans multiple high-impact domains with particular emphasis on: Legal natural language processing and multilingual legal reasoning Large language model applications in political and social contexts Fairness-explainability trade-offs in AI systems Innovative representation learning techniques for textual data Analysis of his recent publications reveals a strong focus on bridging legal informatics with cutting-edge NLP methodologies. His work on multilingual legal corpora (including the 689GB MultiLegalPile dataset) and legal decision influence prediction demonstrates practical applications for judicial systems. Simultaneously, his investigations into LLMs as voting assistants and European political spectrum analysis showcase innovative intersections between computational social science and language technology. His technical contributions to contrastive learning and hyperbolic embeddings provide foundational advances for document representation. Chalkidis actively participates in the research community through workshop organization (Natural Legal Language Processing Workshop 2023-2024) and conference presentations. His research has been published in top-tier venues including ACL, EMNLP, and ECAI, with significant citations reflecting community impact. While specific advising relationships aren't documented in the provided materials, his collaborative work patterns suggest active mentorship within the NLP research ecosystem.

• Natural Language Processing
• Legal Informatics
• Multilingual NLP
• +3 more

Tina Paulsen Christensen is an Associate Professor at Aarhus University's School of Communication and Culture. Her research focuses on AI-driven technologies in education and society, particularly exploring interactions between humans, machines, and languages. She specializes in areas such as generative AI, machine translation literacy, and digital text generation. Her educational background includes expertise in German Business Communication and advanced studies in language technology applications. Key projects include AI-literacy i sproguddannelserne (2025-2027) addressing language education in the AI era, and Generative AI-værktøjer i fremmedsproglig tekstproduktion (2024-2025) focusing on AI tools in multilingual text creation. Research interests span translation technology, human-computer interaction ethics, and educational strategies for integrating AI tools. She has contributed to discussions on machine translation's societal impact and translator work practices through articles like 'What motor vehicles and translation machines have in common' and 'Vær smartere end dine elever.' Notable collaborations include the HAL research project (2018-2023) exploring translation technology's human, application, and language dimensions. She actively engages in policy discussions, including the legislative proposal for interpreter education in Denmark.

• Artificial Intelligence
• Translation Studies
• Educational Technology
• +3 more