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Rosa Lundbye AllesøeView profile

Researcher

• Whole Genome Sequencing
• Infectious Disease
• Microbiology
• +5 more

Rosa Lundbye Allesøe is a Researcher at the Department of Health Technology at the Technical University of Denmark (DTU). Her work spans multiple interdisciplinary fields including bioinformatics, microbiology, and immunogenetics, with a particular focus on genomic analysis of infectious diseases and antimicrobial resistance. She has made significant contributions to computational biology tools and population-based health studies. Her research interests center around Whole Genome Sequencing , Infectious Disease surveillance, Antimicrobial Resistance prediction, and the intersection of immunology with mental health. Her work often involves developing computational methods for pathogen identification and analyzing large-scale genomic datasets to understand disease mechanisms. She has contributed to important bioinformatics tools like ResFinder for antibiotic resistance prediction. Analysis of her publications reveals a strong trend toward interdisciplinary research combining computational methods with biomedical applications. Her work bridges the gap between traditional laboratory science and data-intensive computational approaches, particularly in the areas of pathogen genomics and the application of machine learning to biological problems. The 2023 Nature Biotechnology paper demonstrates her work at the cutting edge of AI applications in drug discovery. Her research contributes to multiple United Nations Sustainable Development Goals, particularly those related to health and well-being. While specific awards are not listed in the available information, her publications have garnered significant attention, with the ResFinder 4.0 paper alone receiving over 2,000 citations and being referenced in 20 policy documents. Rosa Lundbye Allesøe works within collaborative research networks involving multiple Danish and international institutions. Her research group focuses on computational genomics and its applications to public health challenges, particularly in pathogen surveillance and antimicrobial resistance monitoring. The department's work has significant implications for global health security and personalized medicine approaches.

Armin MešićView profile

Researcher

• Mycology
• Fungal Biodiversity
• Fungal Biogeography
• +3 more

Dr. Armin Mešić is a prominent mycologist serving as Head of the Laboratory for Biological Diversity within the Division for Marine and Environmental Research at Ruđer Bošković Institute in Zagreb, Croatia. With over two decades of research experience, he has established himself as a leading expert in fungal taxonomy, biodiversity, and systematics, particularly focusing on Croatian and Balkan fungal species. Dr. Mešić earned his BSc in Biology (Ecology) from the University of Zagreb in 1999, followed by a PhD in Biology (Mycology) from the same institution in 2006. His doctoral research focused on "Agaricales fungi with white spores in Croatia," establishing the foundation for his extensive career in fungal taxonomy. Dr. Mešić's primary research interests center on mycology, with specific focus on fungal biodiversity, biogeography, and systematics. His work spans various aspects of fungal science, including: Taxonomic studies of Agaricales and other fungal groups DNA barcoding applications for fungal identification Conservation of threatened fungal species Ecosystem services provided by fungi in forest environments Biogeographical patterns of fungal distribution in the Balkan region Analysis of Dr. Mešić's recent publications reveals a strong emphasis on integrative taxonomy approaches combining morphological and molecular techniques. His research increasingly focuses on applying DNA barcoding to assess fungal diversity and its role in forest ecosystem services. There's also a growing interest in understanding how climate change impacts fungal communities and their interactions with plant systems. Dr. Mešić has been actively involved in mentoring the next generation of mycologists, supervising numerous graduate students through their thesis work. He has led significant research projects including the CSF scientific research project "Enhancement of Croatian forest ecosystem services through assessment of fungal diversity based on DNA barcoding" (2018-2022), which demonstrates his commitment to applying mycological research to practical environmental challenges. The Laboratory for Biological Diversity under Dr. Mešić's leadership serves as a hub for mycological research in Croatia, focusing on fungal taxonomy, biodiversity assessment, and conservation. The laboratory maintains strong collaborations with international mycological communities and contributes significantly to global fungal databases and classification efforts.

Victor ChepinogaView profile

Researcher

• Geobotany
• Biogeography
• Phytosociology
• +3 more

Dr. Victor Chepinoga serves as a Scientific Researcher in the Department of Geobotany at the Institute of Earth System Sciences, Faculty of Natural Sciences, Leibniz University Hannover. His office is located at Nienburger Straße 17, Building 3201, Room 110A, Hanover. With extensive experience in Siberian flora research, he maintains active collaborations across Russian and German academic institutions. His research focuses on Geobotany, Biogeography, Phytosociology, and Hydrobotany , specializing in vascular plant systematics, vegetation classification, and floristic studies of Siberian and Asian ecosystems. Current work emphasizes the flora of Baikal Siberia, grassland ecosystems across Asia, and genomic biogeography of alpine plants. His methodological expertise includes vegetation mapping, taxonomic revisions, and paleoecological analysis using sediment records. Analysis of his 14 recent publications (2022-2025) reveals dominant themes in floristic inventories (notably the comprehensive Checklist of vascular plants of Asian Russia), species-level systematics (particularly Acorus and Poaceae), and vegetation classification frameworks for conservation applications. His work bridges classical taxonomy with modern genomic approaches and emphasizes open-access data dissemination. Dr. Chepinoga has managed multiple Russian Foundation for Basic Research (RFG) projects including studies of Baikal Siberia's flora (2019-2020), Nemoral Refuge vegetation (2016-2018), and aquatic plant diversity (2014-2015). He serves on editorial boards for Botanica Pacifica (since 2012) and Vegetation Classification and Survey (since 2022), and was Editor-in-Chief for Flora and vegetation of Asian Russia (2021-2022).

Nicola CampView profile

Professor

• Statistical Genetics
• Genetic Epidemiology
• Cancer Genetics
• +5 more

Nicola Camp is Professor of Hematology and Adjunct Professor in Human Genetics, Biomedical Informatics, and Family and Preventive Medicine at the University of Utah, focusing on identifying inherited genetic risk variants for complex diseases through novel statistical methodologies and applied gene-finding projects. Her work addresses critical challenges in cancer genetics including genetic heterogeneity and disease complexity. Her educational background includes: B.S. in Mathematics and Statistics from the University of Sheffield, UK Ph.D. in Statistical Genetics from the University of Sheffield, UK Dr. Camp's research integrates theoretical statistical genetics with practical applications in cancer susceptibility, particularly for breast cancer, chronic lymphocytic leukemia (CLL), and multiple myeloma (MM). She leverages the unique Utah Population Database (UPDB) and high-risk pedigrees to develop methods incorporating genomic, transcriptomic, and molecular phenotypic data. Current projects involve whole-exome/genome sequencing in CLL pedigrees, high-density SNP genotyping in hematological malignancies, and apoptosis pathway analysis in breast cancer. Analysis of her recent publications reveals dominant trends in polygenic risk score development across diverse populations, BRCA variant classification using multi-modal evidence, and shared genomic segment analysis in high-risk pedigrees for cancer and reproductive disorders. Her work increasingly emphasizes cross-cancer pleiotropy and multi-omics integration to address complex disease mechanisms. Dr. Camp maintains an active research laboratory utilizing the UPDB's genealogical resources and collaborates extensively across campus and within international consortia including InterLymph. Her team specializes in developing statistical frameworks that bridge theoretical innovation with real-world data challenges in genetic epidemiology.

Sheri HolmenView profile

Professor

• Melanoma biology and therapy resistance
• Glioblastoma and pediatric glioma
• Brain metastasis mechanisms
• +5 more

Sheri Holmen, Ph.D. is a Professor of Surgery and Adjunct Professor of Oncological Sciences at the University of Utah, and co-leads the Cell Response and Regulation Program and Melanoma Center at the Huntsman Cancer Institute (HCI). Her laboratory employs sophisticated genetically-engineered mouse models to dissect the molecular circuitry governing melanoma and glioblastoma initiation, progression, and therapeutic resistance. Education: B.S. – Western Michigan University Ph.D. – Mayo Clinic College of Medicine Research Focus: Dr Holmen’s team concentrates on high-priority oncogenic pathways—PI3K/AKT/mTOR, MAPK, and focal adhesion kinase (FAK)—leveraging conditional RCAS/TVA retroviral systems to introduce precise genetic alterations in melanocytes and neural progenitors. The overarching goal is to uncover tractable therapeutic targets for metastatic melanoma and glioblastoma, particularly brain metastases that portend dismal prognosis. Scientific Impact & Trends: Across more than 100 peer-reviewed publications since 2012, Holmen’s group has demonstrated convergent mechanisms of resistance to BRAF/MEK inhibition, identified ARF6-mediated immune evasion, and validated combinatorial FAK + RAF/MEK blockade as a strategy to overcome micro-environmental resistance. Their 2024–2025 output emphasises metabolic liabilities (OXPHOS, CNDP1) and rational immunotherapy combinations. Current Funding & Collaborations: Principal investigator on multiple NCI-funded R01 and P30 awards via HCI. Founding steering committee member of the international InterMEL consortium (>2,000 early-stage melanomas) to discover prognostic biomarkers. Co-investigator on Utah Genome Project and Oncology Research Information Exchange Network initiatives. Laboratory & Resources: The Holmen laboratory occupies modern space within the HCI research tower and maintains dedicated SPF animal facilities for RCAS/TVA modelling, high-throughput drug screening suites, and single-cell genomics cores. Cross-disciplinary teams include bioinformaticians, translational pharmacologists, and clinician-scientists to accelerate bench-to-bedside translation.

Mark YandellView profile

Academic

• Bioinformatics
• Comparative Genomics
• Genome Annotation
• +7 more

Mark Yandell is a Professor of Human Genetics and Adjunct Associate Professor of Biomedical Informatics at the University of Utah School of Medicine. His research integrates computational biology and experimental molecular genetics to address challenges in genome annotation, comparative genomics, and sequence variation analysis related to human disease. Education: B.S. from University of Texas, Austin; Ph.D. from University of Colorado, Boulder. Research Focus: Genome annotation, high-throughput biological image analysis, and genomic correlates of human diseases using Utah Population Database and Utah Genetic Reference Project. Collaborations: Co-developed the MAKER genome annotation pipeline with Prof. Alejandro Sánchez Alvarado; leads the Utah NeoSeq Project for neonatal genomic diagnostics. Technical Contributions: Organized acquisition of BD Pathway Bioimager for RNAi screening in S. mediterranea , a flatworm model for regenerative medicine. His lab bridges computational and experimental approaches, emphasizing training opportunities at the intersection of computer science and molecular genetics. Recent publications highlight applications of machine learning and AI in neonatal diagnostics, fetal growth restriction, and disease risk stratification. Key Affiliations : Human Genetics, Biomedical Informatics, University of Utah School of Medicine.

Lloyd M. SmithView profile

Professor

• Mass Spectrometry
• Proteomics
• Bioinformatics
• +3 more

Lloyd M. Smith is the W. L. Hubbell Professor and Hall-Fischer Professor of Chemistry at the University of Wisconsin–Madison. His research focuses on developing cutting-edge proteomics technologies that bridge biology, chemistry, and computational analysis. Key research areas include comprehensive proteoform identification Development of tools like ProteaseGuru, MetaMorpheus, and FlashLFQ Applications in neurodegenerative diseases (Alzheimer's), viral biology (HIV), and diabetes Research trends show strong emphasis on: Mass spectrometry innovations RNA-protein interaction networks Proteoform family concept development Machine learning integration in proteomics

• Colorectal Cancer
• Lynch Syndrome
• Hereditary Cancer Syndromes
• +5 more

Inge Bernstein serves as Chief Medical Consultant at Aalborg University Hospital within the Faculty of Health Sciences. She maintains active roles in hospital administration and clinical leadership while contributing significantly to research in hereditary colorectal cancer. Affiliation: Aalborg University Hospital, Faculty of Health Sciences Position: Chief Medical Consultant Leadership: Forum for Leading Senior Physicians AaUH (2015-2019), Danish Surgical Society Board of Directors (2013-2019) Dr. Bernstein's research focuses on hereditary cancer syndromes, particularly Lynch syndrome and colorectal cancer genetics. Her work spans clinical management of hereditary cancer, colonoscopy quality metrics, cancer surveillance protocols, and translational research connecting DNA mismatch repair mechanisms to clinical outcomes. She has pioneered methods for diagnosing hereditary colon cancer and investigating stool-based cancer detection. Analysis of her recent publications reveals a strong emphasis on practical clinical applications of genetic research, with particular attention to optimizing colonoscopy protocols for Lynch syndrome patients, understanding cancer risk stratification, and improving long-term outcomes for hereditary cancer patients. Her work bridges molecular genetics with clinical practice through large international collaborations like the Prospective Lynch Syndrome Database. Professional Committee - Danish Comprehensive Cancer Center (2020-present) Working group Colonoscopy education - DKS & DSGH (2019-present) HU Recruitment Committee Surgery REGION NORTH & SOUTH (2014-present) Dr. Bernstein has been featured in multiple media outlets discussing her research on hereditary colon cancer diagnosis and stool-based cancer detection methods, demonstrating her commitment to translating complex medical research for public understanding.

• Community Ecology
• Invasive Species Biology
• Plant-Soil Interactions
• +5 more

Jean Burns is a Professor in the Department of Biology at Case Western Reserve University (College of Arts and Sciences). Her research focuses on integrating phylogenetic history, dispersal ecology, and population demography to understand species distributions and community assembly mechanisms, particularly using invasive species as model systems. Studies plant-soil-microbe interactions across Rhododendron species Investigates climate change impacts on plant demography Develops ecological restoration protocols Employs field experiments, greenhouse studies, and computational modeling Her lab actively engages in collaborative research with public gardens and maintains a global focus on plant invasion dynamics. Contact: jbm122@case.edu | DeGrace Hall, Room 307 | Burns Ecology Lab

Lisha ShaoView profile

Assistant Professor

• Neurobiology of Reward
• Drosophila Genetics
• Neural Circuits and Behavior
• +3 more

Lisha Shao is an Assistant Professor in the Department of Biological Sciences at the University of Delaware, affiliated with the College of Arts & Sciences. Her research focuses on the neurobiology of reward systems, specifically investigating how sensory signals are transformed into reward perception in Drosophila melanogaster . She leads the Shao Lab, which employs neurogenetic, behavioral, and circuit-mapping approaches to study reward valuation, stress-reward interactions, and decision-making processes. Education: B.S. in Biological Sciences from Nankai University, Ph.D. in Neuroscience from Tsinghua University, and a postdoctoral fellowship at Janelia Research Campus, HHMI. Current research projects include mapping neural circuits underlying female mating valence, dopamine neuron function, and stress effects on reward pathways. Her work integrates molecular, cellular, and systems-level analyses to address fundamental questions in reward neuroscience. The lab's research has implications for understanding behavioral adaptations, mental health disorders, and neural plasticity. The Shao Lab actively collaborates with institutions globally and maintains a dedicated research website.

• Ecology
• Biochemistry
• Mathematics
• +4 more

Bob M. Oscar is a Professor affiliated with the VIVO Demo Instance. His academic work spans multiple disciplines including Ecology, Biochemistry, Mathematics, Medical Sciences, Library Science, Materials Science, and Statistics. Dr. Oscar's research interests focus on ecological systems, mathematical modeling, medical sciences, and information systems. His work demonstrates interdisciplinary approaches that bridge traditional academic boundaries, with particular emphasis on marine ecology, cellular biology, and data science applications across multiple domains. Analysis of his publication record shows consistent research output from 1979 through 2016 across prestigious journals including Science, Nature, Cell, Journal of Ecology, New England Journal of Medicine, and Acta Mathematica. His work demonstrates a pattern of interdisciplinary research with connections between biological systems, mathematical modeling, and information science. Dr. Oscar has collaborated with researchers across multiple institutions, with co-authors including Lauren K. Hermann, Izzy F. Laon, Xerxes Yiola, Sara R. Nunes, Kristi V. Ithimore, and Pedro N. Oscar. His 1996 publication in the Journal of Biochemistry covered diverse subject areas including Baseball, British Royal Navy, Cubism, and Obstetrics, highlighting his interdisciplinary approach.

• Alpine plant ecology
• Climate change impacts on mountain ecosystems
• Functional seed trait ecology
• +4 more

Manuela Winkler is a Priv.-Doz. Dr. (equivalent to Associate Professor) at the University of Natural Resources and Life Sciences, Vienna (BOKU) , affiliated with the Department of Ecosystem Management, Climate and Biodiversity . She holds teaching authorization in ecology and evolution of plants and is actively involved in both research and teaching at BOKU. Her research focuses on alpine plant ecology , climate change impacts , functional seed trait ecology , and long-term vegetation monitoring . She is a key contributor to the GLORIA (Global Observation Research Initiative in Alpine Environments) network and has conducted extensive fieldwork in the European Alps and beyond. Her work spans community assembly processes , polyploidy and speciation , phylogeography , and plant–environment interactions across elevation gradients. She has published extensively in high-impact journals, with over 50 peer-reviewed articles since 2005, many of which are co-authored with international collaborators. Scientific Contributions: Led long-term alpine vegetation monitoring across Europe Developed novel methodologies for analyzing plant functional traits and community dynamics Investigated the role of microclimates and microtopography in shaping alpine plant distributions Contributed to global databases such as SoilTemp, ReSurveyEurope, and GrassPlot Advising & Collaborations: While specific student names are not listed, her extensive publication record indicates active supervision and collaboration with graduate students and postdocs. She is involved in international research networks and has coordinated cross-site comparative studies across European mountain ranges. Labs & Teams: She is associated with the gGLORI research group at BOKU, which focuses on alpine biodiversity and climate change. Her work is supported by long-term monitoring infrastructure and collaborative projects across Austria and Europe.

• Maize Genetics
• Plant Genomics
• Germplasm Resources
• +3 more

Martin M Sachs serves as an Assistant Professor in the Department of Crop Sciences at the University of Illinois and a Scientist with the USDA Agricultural Research Service, focusing on maize (Zea mays) genetics and genomics. His work bridges agricultural science and molecular biology through investigations into plant stress responses, germplasm conservation, and bioinformatics infrastructure development. Research interests prominently feature maize genetics, plant anaerobiosis mechanisms, and germplasm resource management. His fingerprint analysis reveals core specializations in alcohol dehydrogenase function (29%), anoxia tolerance (22%), and gene expression under oxygen deficiency (21%), with significant contributions to understanding metabolic adaptations in low-oxygen environments. Recent publications demonstrate sustained focus on maize genomics, including the 2024 discovery of the PTOX locus controlling kernel carotenoid content and the 2019 MaizeGDB database expansion enabling multi-genome analysis. These works reflect interdisciplinary integration of molecular biology, bioinformatics, and crop physiology to address agricultural challenges. Scientific Awards: No specific awards, fellowships, or medals were documented in the source material. Advising and grants: The available text contains no information regarding student mentorship, research funding, or grant administration activities.

Katalin Terezia FerencView profile

Research Fellow

• Computational Biology
• Genomics
• Bioinformatics
• +3 more

Katalin Terezia Ferenc is a Research Fellow at the Norwegian Center for Molecular BioMedicine (NCMBM), University of Oslo, affiliated with the Faculty of Mathematics and Natural Sciences. She is part of the Anthony Mathelier Group focusing on Computational Biology & Gene Regulation. Her current project involves developing deep learning models to stratify breast cancer subtypes based on transcriptional regulation. Education includes a BSc in Biology from Eötvös Loránd University, an MSc in Biomedicine from the Karolinska Institute, and an MSc in Applied Data Science from the University of Gothenburg. Research interests span computational biology, genomics, and machine learning applications in cancer biology. Previous work includes DNA FISH probe design, analysis of DNA double-strand breaks in ovarian cancer, predictive modeling of drug-induced mitochondrial toxicity, and characterization of DRUG-seq techniques. She actively contributes to improving bioinformatics software quality and open-access resources like the JASPAR database. Publications highlight her expertise in computational methodologies, collaborative research practices, and transcription factor analysis. She is a member of the Mathelier Group, emphasizing interdisciplinary approaches to molecular biology challenges.

Colm NestorView profile

Associate Professor

• Epigenetic Control of Human T-cell Biology
• Autoimmunity and Allergy
• Cancer (Hematology and Other Tumors)
• +3 more

Colm Nestor is a Senior Associate Professor at Linköping University, Sweden, affiliated with the Faculty of Medicine and Health Sciences, Department of Biomedical and Clinical Sciences, and the Division of Children's and Women's Health. His research focuses on epigenetic control of T-cell biology, sex differences in disease susceptibility, and developing therapies targeting DNA methylation. He holds leadership roles including Chair of the Junior Faculty Club, Co-Chair of the Centre for Personalised Medicine, and Member of the Academic Employment Board. Education highlights include a B.A. in Natural Sciences from Trinity College Dublin, followed by M.Sc. degrees in Computer Science (University of Cork) and Bioinformatics (University of York). He earned his Ph.D. in 2003 from the University of Glasgow. Postdoctoral training includes roles at the University of Edinburgh and Linköping University, alongside industry experience as a Bioinformatics Specialist at DeCODE Genetics and a Database Developer at LION Biosciences. Research interests center on understanding how the X-chromosome and DNA methylation influence health, particularly in autoimmune diseases, infections, and cancers like childhood leukemia. He investigates sex-specific disease mechanisms and leverages systems medicine to identify diagnostic/therapeutic targets. His work also addresses methodological flaws in epigenetic research, such as the widely used DIP-seq method. Recognized with prestigious awards: the 2025 Onkel Adam Prize and an ERC Consolidator Grant (2020) for sex-bias research. He also received funding from the Joanna Cocozza Foundation for pediatric medicine studies. Current projects include studying TET2 reactivation in leukemia and epigenetic changes in pregnancy-related T-cell dysfunction. Nestor advises four PhD students and collaborates with researchers like Huan Zhang (Principal Research Engineer) and Antonio Lentini (Researcher). He contributes to teaching at the Medical Program, Experimental Biosciences M.Sc., and Ph.D. courses. His lab, The Nestor Lab , integrates epigenetic, genomic, and computational approaches for clinical impact.