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Knut ReinertView profile

Professor

• Algorithmic Bioinformatics
• Genomic Sequence Analysis
• Proteomics
• +7 more

Professor Knut Reinert is a leading figure in algorithmic bioinformatics at the Free University of Berlin, where he holds a professorship in the Department of Mathematics and Computer Science. He also maintains a significant affiliation with the Max Planck Institute for Molecular Genetics in Berlin, where he leads the Efficient Algorithms for Omics Data group. His research spans both institutions through the Reinert Lab, which focuses on developing novel computational approaches for biological data analysis. Reinert's educational background includes a Diploma in Computer Science (1994) and a Doctorate (Dr. Ing./Ph.D., 1999, with honors) from the Max-Planck-Institut for Computer Science and Universität des Saarlandes in Saarbrücken. Prior to his professorship, he worked as a computer scientist under Prof. Gene Myers at Celera Genomics in Rockville, USA (1999-2002). His primary research interests center on algorithmic bioinformatics with specific focus on developing novel algorithms and data structures for biomedical mass data analysis. This includes creating mathematical models for genomic sequence analysis and algorithms for mass spectrometry data to detect differential protein expression between normal and diseased samples. His work bridges the gap between computational tool development and practical biological applications, with particular emphasis on NGS and proteomics data. The publications and projects led by Prof. Reinert demonstrate a consistent focus on advancing computational methods in bioinformatics. His research spans genomic sequence analysis, RNA research (particularly long non-coding RNAs), parallel computing applications, and GPU acceleration for biological data processing. The work shows increasing sophistication in handling large-scale biological datasets through innovative algorithmic approaches. Intel® Parallel Computing Center designation for his lab CUDA Research Center status DFG funding of 530 thousand Euros for RNA research de.NBI funding of 2 million Euros BMBF funded projects 'LIVE-DREAM' and 'EssBar' Prof. Reinert leads multiple significant research projects and has established strong collaborations with international partners including Texas A&M, Kings College London, Eberhardt-Karls Universität Tübingen, Robert-Koch-Institute, and various Turkish institutions. His lab receives funding from major organizations including DFG, BMBF, and Intel. The Reinert Lab maintains active teaching responsibilities at FU Berlin, offering courses at BSc, MSc, and PhD levels using both traditional and innovative learning concepts like e-learning and inverted classrooms. The Reinert Lab consists of two interconnected research groups that work closely with experimental biologists and medical researchers to develop practical computational solutions for real-world biological problems. The lab has established itself as a key player in the German and international bioinformatics community through its development of the widely-used SeqAn library and participation in national infrastructure initiatives.

John P. O'DohertyView profile

Professor

• Decision Neuroscience
• Reward-related Learning
• Computational Modeling
• +3 more

John P. O'Doherty serves as the Fletcher Jones Professor of Decision Neuroscience within Caltech's Division of Humanities and Social Sciences, holding continuous faculty appointments since 2004 (Assistant Professor 2004-07, Associate Professor 2007-09, Professor 2009-present, Fletcher Jones Professor 2021-present). He previously directed the Caltech Brain Imaging Center (2013-17) and maintains affiliations with the T&C Chen Center for Social and Decision Neuroscience. His educational background includes a B.A. from University of Dublin, Trinity College (1996) and D.Phil. from University of Oxford (2000). His research focuses on computational and neural mechanisms of reward-based learning and decision-making , employing fMRI, intracranial recordings, and mathematical modeling to investigate how the brain solves complex decision problems through evolutionarily conserved algorithms. Key areas include Reinforcement learning systems (model-based/model-free arbitration) Observational and social learning mechanisms Neural representation of value, risk, and uncertainty Computational phenotyping of mental disorders Temporal dynamics of goal persistence Analysis of his 2023-2025 publications reveals dominant trends in computational psychiatry (problem gambling, autism traits), hierarchical decision-making, and neuroeconomic modeling of social behavior. His work consistently integrates cross-species computational frameworks with human neuroimaging to identify transdiagnostic mechanisms. While specific awards beyond his endowed professorship aren't detailed, his leadership as Brain Imaging Center Director and prolific high-impact publications demonstrate significant recognition. Current advising includes graduate researcher Sneha Aenugu on goal-persistence projects, with administrative support from Mary A. Martin (mmartin@caltech.edu). His active research program continues to pioneer computational approaches to understanding decision pathologies.

Ahmet AcarView profile

Associate Professor

• Cancer Biology
• Precision Medicine
• Drug Resistance Mechanisms
• +3 more

Dr. Ahmet Acar is an Associate Professor at the Department of Biological Sciences, Middle East Technical University (METU), Ankara, Turkey. He leads the Cancer Precision Medicine and Drug Resistance Laboratory, focusing on understanding mechanisms of drug resistance in cancer. His research integrates experimental models, next-generation sequencing, and deep learning to address clinical challenges in cancer therapy. Dr. Acar holds a B.Sc. from METU's Biological Sciences department and a Ph.D. from the Cancer Research UK Manchester Institute. He completed postdoctoral training at the Institute of Cancer Research, London, and the University of Manchester. Research Interests: Drug resistance mechanisms, precision oncology, tumor microenvironment modeling, patient-derived organoids, computational pathology, and evolutionary cancer biology. His lab develops 2D/3D co-culture systems, PDO biobanks, and AI-driven histopathology tools to improve treatment strategies. Recent Work Trends: Recent publications emphasize tumor evolution modeling, matrix mechanics in drug resistance, and AI applications in histopathology. Collaborations with hospitals in Turkey and Europe support PDO biobank initiatives. His team explores evolutionary steering strategies to exploit collateral drug sensitivities. Labs/Teams: Precision Medicine and Drug Resistance Lab at METU focuses on interdisciplinary approaches combining wet-lab experiments with computational methods. Current projects include ex vivo tumor modeling and AI-driven diagnostic tools for oncology.

Kathryn RoederView profile

Professor

• Statistical Genetics
• Genomics
• Biostatistics
• +5 more

Kathryn Roeder is the UPMC University Professor of Statistics and Life Sciences at Carnegie Mellon University (CMU), affiliated with the Dietrich College of Humanities and Social Sciences and the Departments of Statistics & Data Science and Computational Biology. Her research focuses on developing statistical methods for genetic and genomic data, particularly in identifying autism risk genes and analyzing single-cell multi-omic data. She earned her Ph.D. in Statistics from Penn State University and has been at CMU since 1994, previously serving as Vice Provost for Faculty (2015–2019). Education: Ph.D. in Statistics, Penn State University (1988) B.S. in Wildlife Resources, University of Idaho (1982) Research Interests: Her work integrates modern statistical techniques (high-dimensional statistics, machine learning, networks) to study complex diseases like autism and schizophrenia. Recent efforts include tools for analyzing single-cell RNA-seq and proteomic data, such as UNICORN, DAWN, and SCEPTRE. Key Awards: COPSS Distinguished Achievement Award (2020) National Academy of Sciences Member (2019) COPSS Presidents’ Award (1997) AAAS Fellow (2020) Advising & Grants: She has advised over 20 Ph.D. students, many contributing to landmark studies in autism genetics. Her grants include NIH funding for projects like the Autism Sequencing Consortium. Current research teams focus on computational biology and statistical genetics. Labs & Collaborations: Her lab develops software tools (e.g., TADA, MIND) and collaborates with the Autism Sequencing Consortium and iPSYCH-BROAD Consortium on large-scale genomic studies.

Hiren PatelView profile

Professor

• Real-Time Embedded Systems
• Computer Architecture
• Hardware for Machine Learning/AI
• +9 more

Dr. Hiren Patel is a Professor in the Department of Electrical and Computer Engineering at the University of Waterloo. He holds a Doctorate in Computer Engineering from Virginia Tech and previously worked as a postdoctoral fellow at UC Berkeley under Edward A. Lee. His research focuses on real-time embedded systems, computer architecture, machine learning hardware, and cybersecurity. He teaches courses like ECE 150 (Programming), ECE 320/429 (Computer Architecture), and ECE 327 (Digital Systems). Research Interests: Cyber-physical systems and hybrid architectures Hardware/software co-design methodologies Predictable cache coherence protocols IoT and edge computing systems Security in embedded and real-time systems Recent work emphasizes cache coherence solutions for safety-critical systems and GPU acceleration strategies. His publications address challenges in multicore predictability, FPGA bandwidth optimization, and autonomous robotics orchestration. No specific awards are listed, though his extensive publication record indicates significant contributions to embedded systems research. He currently oversees graduate student applications focusing on his core research areas.

Tianxi CaiView profile

Professor

• Biomedical Informatics
• Biostatistics
• Machine Learning
• +7 more

Tianxi Cai, ScD, holds the John Rock Professorship in Population and Translational Data Sciences at the Harvard T.H. Chan School of Public Health and is a Professor of Biomedical Informatics at Harvard Medical School. She directs the Translational Data Science Center for a Learning Health System (CELEHS). Her work bridges clinical and basic science data to advance personalized medicine and disease understanding. Institution: Harvard University Departments: Biostatistics (T.H. Chan School) and Biomedical Informatics (HMS) Key Roles: Faculty member since 2002, NIH-funded researcher, and leader in EHR data analytics Research focuses on biomarker evaluation, predictive modeling, high-dimensional data analysis, and survival analysis. Collaborates with the I2B2 Center to integrate clinical and genomic data. Active in developing semi-supervised learning methods for noisy EHR data and real-world evidence generation. Funding : Recent grants include NIH projects on rheumatoid arthritis treatment response (R01AR080193, R21AR078339) and semi-supervised EHR denoising (R01LM013614). Co-leads initiatives on chronic disease endpoints using multi-source data (U01FD007929). Labs/Teams : Directs CELEHS and leads the Cai Lab, focusing on translational data science and machine learning applications in healthcare.

• Machine Learning
• Genomics
• Gene Regulatory Networks
• +3 more

Sushmita Roy is a Professor at the University of Wisconsin–Madison, affiliated with the Department of Computer Sciences and the College of Letters and Science. Her research focuses on developing computational methods in statistical machine learning to understand gene regulatory networks in living cells, particularly under environmental, developmental, disease, and evolutionary contexts. She explores bulk and single-cell genomic data integration to study processes like cell fate specification, host-microbe interactions, and diseases such as cancer and neurodevelopmental disorders. Her work emphasizes three key areas: inference of genome-scale transcriptional networks, evolutionary analysis of regulatory networks, and 3D genome organization dynamics. Roy’s lab collaborates across disciplines, leveraging genomic data from plant and mammalian systems. She has contributed to methodologies for analyzing chromatin accessibility, single-cell profiling, and network-based models of pathogen systems. Her affiliations include Wisconsin Institutes for Discovery, and she is a leader in computational biology and systems genomics research.

Eduardo AzevedoView profile

Professor

• Microeconomic theory
• Market design
• Selection markets
• +4 more

Eduardo Azevedo is the John M. Bendheim and Thomas L. Bendheim Professor of Business Economics and Public Policy at the Wharton School , University of Pennsylvania. He holds a courtesy appointment as Professor of Economics and was awarded the 2016 Sloan Foundation Fellowship. His research integrates economic theory with practical applications across science and business domains. His research interests include: Market design Selection markets Social science genetics Experimental economics Game theory Recent publication trends focus on: Economic theory applications to healthcare and digital markets Empirical Bayes methods in A/B testing Adverse selection in insurance markets Strategic behavior in two-sided matching Evolutionary behavioral economics He serves as an instructor for BEPP2500 - Managerial Economics , emphasizing real-world application of microeconomic theory to business problems. His work also involves software development for economic research, including MATLAB-based empirical Bayes tools for analyzing treatment effects in large-scale experiments. Scientific awards : Sloan Foundation Fellow (2016)

• Energy Systems Optimization
• Conceptual Process Design
• Life Cycle Assessment
• +8 more

Prof. Dr. André Bardow is a Full Professor in Energy and Process Systems Engineering at ETH Zurich , leading research at the intersection of thermodynamics, machine learning, and sustainable energy systems. Previously, he held professorships at RWTH Aachen University (2010-2020) and TU Delft (2007-2010). He also served as part-time director at Forschungszentrum Jülich (2017-2022) and visiting professor at UC Santa Barbara (2015/16). His work focuses on energy systems optimization , computer-aided molecular design , and CO2 capture & utilization . PhD from RWTH Aachen University Current ETH Zurich affiliation Former roles at RWTH Aachen, TU Delft, Jülich Research Center His research integrates machine learning with thermodynamic modeling to optimize processes like crystallization and electrochemical cooling . Recent publications demonstrate advancements in solvent design, CO2 transport LCA, and ORC working fluid optimization. He chairs the VDI Technical Committee for Thermodynamics (2016-2024) and has received multiple awards including the Covestro Science Award and Arnold-Eucken-Award . Current projects address carbon circular economies , electrified chemical production , and AI-driven process optimization . His lab at ETH Zurich develops cutting-edge technologies like ML-CAMPD frameworks for sustainable separation processes and photoacid-based CO2 capture systems. Funding from the H2020 Systemic Expansion of Circular Ecosystems (grant 101036854) supports these initiatives. 2024 Clarivate Highly Cited Researcher 2022 Inaugural Lecture: "To sustainability and beyond: A computer-animated story on energy & chemicals" Recipient of multiple teaching and research excellence awards

David S. EisenbergView profile

Professor

• Protein Aggregation
• Amyloid Structures
• Prion Diseases
• +5 more

David S. Eisenberg is a Professor of Chemistry and Biochemistry and Biological Chemistry at the University of California, Los Angeles, where he also serves as Director of the UCLA-DOE Institute for Genomics and Proteomics and as an HHMI Investigator. His research focuses on protein interactions, particularly the structural basis for conversion of normal proteins to the amyloid state and conversion of prions to the infectious state. Dr. Eisenberg earned his undergraduate degree in biochemical sciences from Harvard College and his D.Phil. degree in theoretical chemistry from Oxford University on a Rhodes Scholarship. His postdoctoral research was on ice and water with Walter Kauzmann at Princeton and in protein crystallography with Richard Dickerson. He joined the UCLA faculty after his postdoctoral studies. Dr. Eisenberg and his research group focus on protein interactions in amyloid and prion diseases. These diseases involve protein aggregation where normal functional proteins convert to abnormal aggregated forms. Systemic amyloid diseases like dialysis-related amyloidosis result from fiber accumulation until organ failure, while neurodegenerative diseases like Alzheimer's, Parkinson's, ALS, and prion conditions appear to be caused by smaller oligomers. In 2005, his team determined the atomic-level structure for the amyloid fiber spine, revealing a 'steric zipper' of two parallel beta sheets packed across a dry interface. Since then, they've determined approximately 90 amyloid spines from 15 disease-related proteins. In 2010, they identified the structure of a toxic amyloid-related oligomer consisting of six anti-parallel beta strands forming a cylindrical barrel. His recent publications demonstrate continued innovation in amyloid research, with focus areas including structural prediction of amyloid formation, mechanisms of tau fibril disassembly in Alzheimer's disease, cryo-EM analysis of amyloid polymorphism, and structure-based design of inhibitors for amyloid toxicity. His work integrates computational, structural, and biochemical approaches to understand protein aggregation across multiple disease contexts. Dr. Eisenberg has received numerous prestigious awards and honors: National Academy of Sciences Member American Philosophical Society Member Institute of Medicine Member Howard Hughes Medical Institute Investigator Biophysical Society Emily M. Gray Award Harvard Westheimer Medal UCLA Seaborg Medal Technion - Israel Institute of Technology Harvey Prize in Human Health As Director of the UCLA-DOE Institute for Genomics and Proteomics and an HHMI Investigator, Dr. Eisenberg leads significant research initiatives in protein structure and aggregation. His laboratory combines X-ray crystallography, bioinformatics, and biochemical techniques to investigate protein interactions, with particular emphasis on amyloid-forming proteins and their role in disease. The Eisenberg Lab, located in Boyer Hall at UCLA, maintains an active research program investigating the structural basis of protein aggregation. The lab continues to build on its landmark discoveries of amyloid structures while exploring new frontiers in understanding protein misfolding diseases and developing potential therapeutic interventions.

Daiwei ZhangView profile

Assistant Professor

• Artificial Intelligence
• Machine Learning
• Spatial Omics
• +3 more

Daiwei (David) Zhang, PhD, is an Assistant Professor (tenure-track) in the Department of Biostatistics at the University of North Carolina at Chapel Hill School of Medicine, with a joint appointment in the Department of Genetics. His research focuses on developing AI frameworks for analyzing high-dimensional biomedical data, particularly in spatial omics, computational pathology, and medical imaging. Education: MS (Biostatistics) and PhD (Biostatistics and Scientific Computing) from the University of Michigan. Postdoctoral Training: University of Pennsylvania. Research interests include applying machine learning to address biomedical challenges such as tumor heterogeneity, immune interactions, and tissue architecture. His work spans computational methods for spatial transcriptomics, proteomics, and histology integration. Recent publications emphasize spatial multi-omics analysis of cancer ecosystems, tertiary lymphoid structures, and metabolic coordination. These studies leverage advanced machine learning algorithms and interdisciplinary approaches to advance precision medicine. No scientific awards are explicitly mentioned, but his work reflects significant contributions to biomedical AI research. Grants and advising details are not provided in the text.

Farnoush Banaei-KashaniView profile

Associate Professor

• Data Management
• Big Data
• Decision Support Systems
• +4 more

Farnoush Banaei-Kashani is an Associate Professor (Tenured) in the Department of Computer Science and Engineering at the University of Colorado Denver. She also holds an Adjunct Associate Professor position in the Department of Mathematical and Statistical Sciences. As the founder and director of the Big Data Management and Mining Lab (BDLab), she leads multiple GAANN Fellowship Programs, including BDSE (Big Data Science and Engineering), DDC (Data-Driven Cybersecurity), and II (Infrastructure Informatics). She directs the 'Data Science in Biomedicine' MS Track and focuses on data-driven decision systems (DDSs), integrating machine learning and big data analytics into healthcare, energy, transportation, and environmental applications. Education: Details not explicitly provided in the text. Her research spans data management cycles for DDSs, addressing challenges like big data volume, velocity, and variety. Key projects include iWatch (crime surveillance), POCM (mobility monitoring), and GeoSIM (urban texture documentation). She teaches courses such as Machine Learning Systems, Big Data Science, and Data Mining. Publications highlight advancements in sea ice classification, federated learning, proteomic networks, and privacy-preserving AI. Her work is funded by NSF, NIH, DOT, and industry partners like Google and IBM. She has advised numerous students and contributes to academic leadership as editor, conference chair (ACM SIGSPATIAL 2018/2019), and program committee member for venues like SIGMOD and KDD.

Emmanuel J. CandèsView profile

Professor

• Compressive Sensing
• Mathematical Signal Processing
• Computational Harmonic Analysis
• +7 more

Emmanuel J. Candès is the Barnum-Simons Chair in Mathematics and Statistics at Stanford University, with joint appointments in the Institute of Computational and Mathematical Engineering and as Professor of Statistics and Electrical Engineering (by courtesy). His research spans mathematical signal processing , high-dimensional statistics , and data science , focusing on compressive sensing, inverse problems, and applications to imaging sciences. 2021 IEEE Jack S. Kilby Signal Processing Medal 2020 Princess of Asturias Award for Technical and Scientific Research 2017 MacArthur Fellow His recent work on conformal prediction and uncertainty quantification has advanced machine learning reliability, particularly in high-dimensional settings. Publications include breakthroughs in medical imaging, gravitational wave detection, and AI validation frameworks. Key collaborations include Terence Tao (UCLA) and Justin Romberg (Georgia Tech) for IEEE Kilby Medal recognition. He serves as Co-chair of Stanford's Data Science Institute and previously as Statistics Department Chair (2016–2019).

Fumiya IidaView profile

Researcher

• bio-inspired robotics
• evolutionary robotics
• soft robotics
• +3 more

Dr. Fumiya Iida is a researcher affiliated with the University of Cambridge , contributing to interdisciplinary research through Cambridge Reproduction and the Department of Engineering . His work spans bio-inspired robotics , soft robotics , and embodied intelligence , with a focus on biomechanics and human-robot interaction. His research integrates evolutionary robotics , reservoir computing , and tactile sensing , aiming to bridge engineering, physiology, and synthetic biology. Recent publications highlight innovations in Soft robotic actuation Robust control systems Multimodal sensor integration Human-robot collaborative tasks Dr. Iida's 15 most recent 2025 articles emphasize reservoir computing , soft sensor design , and adaptive motor coordination , reflecting his commitment to advancing embodied intelligence in robotics. No formal awards or student advisement details were found in the provided texts.

• Civil Engineering
• Structural Engineering
• Machine Learning in Structural Engineering
• +4 more

Giuseppe Carlo Marano is a Full Professor at the Department of Structural, Building and Geotechnical Engineering at Politecnico di Torino. He is also a component of the SISCON Interdepartmental Center for Infrastructure Safety. With expertise in civil and structural engineering, his work focuses on machine learning applications, seismic risk reduction, and sustainable structural optimization. Education Graduated cum laude in Structural Engineering from Polytechnic University of Bari PhD in Structural Engineering from University of Florence (2000) Research Interests Marano's research spans structural optimization, seismic engineering, and machine learning applications in civil infrastructure. He develops advanced computational models for: Seismic retrofitting of existing structures Optimization of steel and masonry structures Recycled materials in concrete production AI-driven structural health monitoring Multiobjective design methodologies Publication Trends His recent work emphasizes: Machine learning for concrete mix design and damage assessment Optimization of gridshells and arch structures Seismic isolation systems and vibration control Sustainable construction practices with recycled materials Multiobjective genetic algorithms for structural design Scientific Recognitions National Scientific Qualification - First Band (2013, MIUR Italy) Certificate of Appreciation for Outstanding Lecture (2012, China) Academic Contributions As an educator, he teaches: Consolidamento Strutturale (Structural Consolidation) Dinamica delle Vibrazioni Random (Random Vibration Dynamics) Progettazione Generativa (Generative Design) He also leads Challenge@PoliTo initiatives and contributes to national infrastructure safety regulations. Research Projects ADAPT4CE - Adaptive Digital Systems for Circular Economy (2025-2028) AI-ENVISERS - AI for Seismic Retrofit Environmental Impact (2023-2025) ADDOPTML - Additive Manufacturing Optimization (2021-2025)