Hauke Smidt is a Personal Professor at Wageningen University & Research, affiliated with the Molecular Ecology group within the Faculty of Veterinary Medicine and Animal Sciences. His research focuses on microbial ecology, particularly gut microbiota dynamics, antibiotic resistance, environmental microbiology, and the One Health framework. Smidt has supervised over 50 PhD students and contributed to 519 publications, including studies on microbiome resilience, fermented food impacts, and bioremediation strategies. Education and affiliations include leadership roles in projects addressing antimicrobial resistance, pig health, and drinking water microbiology. His work spans collaborations across Europe and Asia, with notable contributions to understanding microbial community responses to environmental stressors and dietary interventions. Smidt is actively involved in public outreach, as seen in media contributions discussing microbiome research and health benefits. Key projects include aquifer treatment for drinking water, microbiome simulation models, and combating plant pathogens. His awards and recognition are not explicitly listed, but his extensive publication record and project leadership highlight significant academic impact.
Dr. Gloria Milena Monsalve Bravo is an Advanced Queensland Industry Research Fellow and lecturer at The University of Queensland's School of Chemical Engineering, where she develops novel multiscale simulation techniques combining molecular simulations with macroscopic physics-based modeling to solve complex energy and environmental problems. Her interdisciplinary work bridges applied mathematics and engineering to improve understanding of phenomena in complex systems across chemical, biomedical, and ecological applications. Her research focuses on: Multiscale simulation techniques for complex systems Molecular simulations coupled with macroscopic modeling Gas permeation and separation in mixed-matrix membranes Uncertainty and sensitivity analysis in mathematical models Applied mathematics for engineering problems Dr. Monsalve Bravo's publication record demonstrates a strong trajectory in membrane technology and computational modeling. Her recent work has advanced understanding of gas transport in novel membrane materials, particularly mixed-matrix membranes, with applications in carbon capture and hydrogen storage. She has made significant contributions to theoretical frameworks for modeling permeation in finite-sized composite systems and developed Bayesian approaches for analyzing parameter uncertainty in sorption predictions. Her research bridges fundamental science with practical applications in energy and environmental engineering. Her scientific contributions have been recognized through research funding including: ARC Research Hub for Value-Added Processing of Underutilised Carbon Wastes (2024-2029) Tailor-made composite membranes for greenhouse gas capture (2023-2026) through Advance Queensland Industry Research Fellowships Dr. Monsalve Bravo actively mentors PhD students on cutting-edge projects related to membrane technology, catalyst development, and waste conversion. She collaborates extensively across disciplines, as evidenced by her diverse publication record spanning chemical engineering, materials science, and environmental applications.
Ting Lu is an Associate Professor at the University of Illinois at Urbana-Champaign in the School of Biomedical and Translational Sciences, focusing on microbial synthetic biology and systems biology. Their research bridges biology, engineering, and physics to reprogram cellular functionalities through gene regulatory networks. Ph.D. in Biophysics, University of California at San Diego (2007) B.S. in Physics, Zhejiang University (2002) Ting Lu's work explores microbial ecosystems, synthetic gene circuits, and their applications in biotechnology and medicine. By combining experimental approaches with mathematical modeling, they investigate bacterial communication networks, metabolic pathways, and spatial dynamics in microbial communities. Selected research trends include microbial consortia engineering for bioremediation and bioproduction, complexity reduction in microbiomes, and predictive modeling of synthetic gene networks. Their publications span high-impact journals such as Nature Communications , Nature Chemical Biology , and eLife . Fellow, American Institute for Medical and Biological Engineering (2022) Future Insight Prize (2021) Donald Biggar Willett Faculty Scholar (UIUC) (2020) NIH Maximizing Investigators' Research Award (2019) NSF CAREER Award (2015) AHA National Scientist Development Grant (2012) Ting Lu's lab has received grants from NIH, NSF, ONR, and industry partners. They offer undergraduate research opportunities in synthetic and systems biology, and teach advanced courses such as BIOE 430 - Intro Synthetic Biology and BIOE 432 - Systems Biology .
Dr. Vakil Takhaveev is a Lecturer at ETH Zurich's Department of Health Sciences and Technology, within the Institute of Food, Nutrition and Health. His research focuses on DNA damage mechanisms, aging, cancer, and neurodegeneration, with particular emphasis on developing novel DNA-damage-sequencing methods like click-code-seq and TRABI-Seq . He investigates anticancer drug action (e.g., trabectedin), aging clocks using DNA oxidation profiling, and stress-induced carcinogenesis. His work integrates multi-omics approaches and advanced sequencing techniques. Research Directions: Novel DNA-Damage-Sequencing Methods: Developed click-code-seq and TRABI-Seq for genomic mapping of DNA lesions and repair dynamics. Anticancer Drug Action: Explored mechanisms of trabectedin and other chemotherapeutics, linking DNA repair vulnerabilities to therapy resistance. Aging Clocks: Created DNA oxidation-based biomarkers for biological aging using genome-wide profiling in human and mouse models. Stress-Induced Pathologies: Studies metabolic and DNA damage links to early tumorigenesis and neurodegeneration. Awards & Recognition: 2025 Public Award Winner in PIs of Tomorrow competition 2024 ETH Zurich Career Seed Award Best presentation awards (Swiss Chemical Society, American Chemical Society) Grants & Collaborations: Impetus grants for aging clock development Swiss Chemical Society and American Chemical Society fellowships Labs & Teams: Leads research on DNA damage and aging mechanisms at ETH Zurich, collaborating with international groups in oncology and toxicology.
John M. Woodley is a distinguished Professor in the Department of Chemical and Biochemical Engineering at the Technical University of Denmark (DTU), where he leads research at the PROSYS - Process and Systems Engineering Centre and contributes to the DTU Microbes Initiative. With over 30 years of experience, he has established himself as a leading expert in biocatalysis and bioprocess engineering, with research spanning both theoretical and experimental work across multiple scales. His primary research interests focus on the interface of bioprocess engineering, process chemistry, and reaction engineering. Dr. Woodley's work encompasses multi-step biocatalysis (including systems biocatalysis and flow chemistry), downstream processing from biocatalytic reactors and fermentations (including ISPR), modeling tools for bioprocess assessment (thermodynamics, kinetics, process simulation, economic evaluation), and bio-oxidations (including oxygen supply methods). His enzymatic investigations particularly target alcohol oxidases, carbohydrate oxidases, cytochrome P450s, Baeyer-Villiger monooxygenases, and transaminases. His research portfolio demonstrates consistent innovation in sustainable chemical production, with particular emphasis on enzymatic synthesis of pharmaceuticals and chemicals from renewable resources. Analysis of his recent publications reveals a strong focus on overcoming industrial implementation challenges, particularly regarding enzyme stability in various reactor environments, optimization of multi-enzyme systems, and scale-up methodologies for biocatalytic processes. Dr. Woodley actively supervises multiple PhD students and leads several significant research projects, including 'P450-based biocatalytic processes for the pharmaceutical industry' (2025-2028), 'Integrated model for up- and downstream bioprocess intensification' (2024-2027), and 'ENFACE: A tool for prediction of enzyme stability at gas-liquid interfaces' (2024-2027). His work has resulted in an impressive publication record of 781 research outputs across various formats, including journal articles, book chapters, and conference proceedings. His research group operates within the Department of Chemical and Biochemical Engineering at DTU, utilizing advanced facilities for biocatalysis research, including specialized reactor systems for studying gas-liquid interfaces, computational modeling resources, and laboratories for enzyme characterization and bioprocess development. Through his leadership in the PROSYS center, he contributes to DTU's strategic focus on sustainable process technologies and systems engineering.
Professor Jianhua Guo is a faculty member at The University of Queensland (UQ), holding the position of Professor and UQ Amplify Fellow in the Australian Centre for Water and Environmental Biotechnology (ACWEB). He is also the ACWEB Deputy Director - Research. His research focuses on integrating process engineering, environmental microbiology, and biotechnology to develop sustainable solutions for contaminant removal in water and wastewater systems. He is a pioneer in studying the environmental dimension of antimicrobial resistance (AMR), particularly how non-antibiotic pharmaceuticals and chemicals contribute to AMR spread. His groundbreaking work has been featured in over 100 media outlets and has secured over $14M in research funding. He has published over 200 peer-reviewed articles in journals like Nature Microbiology , Water Research , and Environmental Science & Technology . His accolades include the 2013 DECRA and 2017 ARC Future Fellowship. He serves as an editor for Journal of Hazardous Materials and Water Science & Technology . Research Interests Environmental AMR and microbial ecology Methane-based biotechnology and bioconversion Nitrogen cycling microorganisms Bioremediation and biofilm reactors Microplastics and health risks Wastewater treatment innovations Grants & Funding $14M+ in ARC Discovery/Linkage grants and industry partnerships ARC Training Centre for Environmental and Agricultural Solutions to Antimicrobial Resistance (CEA-StAR) Dual-membrane upgrading and anaerobic alkane oxidation projects Awards 2013 DECRA 2017 ARC Future Fellowship Supervision Prof. Guo actively supervises PhD and master’s students in areas like AMR mitigation, methane-based bioreactors, and microbial ecology. Notable supervised projects include studies on antibiotic resistance in wastewater, novel disinfection processes, and microbial oxidation of gaseous alkanes. Labs & Teams He leads research teams within ACWEB and collaborates with the Queensland Alliance for Environmental Health Science. His lab focuses on cutting-edge technologies like membrane biofilm reactors and gas fermentation systems.
Paul O'Toole is a Professor of Microbial Genomics and Principal Investigator at the APC Microbiome Ireland, University College Cork. His research focuses on the gut microbiome's role in health, aging, and disease, particularly in the context of diet and probiotics. He leads projects like the ELDERMET study on elderly nutrition and the NU-AGE project exploring Mediterranean diets' anti-aging effects. He holds a BA (Mod.) from Trinity College Dublin and a PhD from Lund University, with postdoctoral training in Canada and New Zealand. Key grants include studies on dairy-derived microbiota, probiotic strain improvement, and microbiome analysis in aging populations. He has published extensively on Lactobacillus genomics, gut-brain interactions, and microbiome-driven health outcomes. His work bridges fundamental microbiology with clinical applications, emphasizing translational research. Scientific highlights include discovering microbiome links to cognitive decline, demonstrating dietary modulation of gut microbes to combat obesity, and identifying keystone species in healthy aging. He advocates for sustainability in conservation and food systems, reflecting his interdisciplinary approach to global health challenges.
Dr. Jeremy Guest is the Levenick Professor in Civil and Environmental Engineering (and courtesy appointment in Chemical & Biomolecular Engineering) at the University of Illinois Urbana-Champaign (UIUC). He serves as Associate Director for Research at the Institute for Sustainability, Energy, and Environment (iSEE) and leads the Center for Advanced Bioenergy and Bioproducts Innovation (CABBI). His research focuses on advancing circular bioeconomies through sustainable sanitation systems, resource recovery from wastewater, and biofuel/bioproduct development from lignocellulosic biomass. Guest's work emphasizes Quantitative Sustainable Design (QSD) methodologies to bridge engineering innovation with policy and investment decisions. Education: PhD in Environmental Engineering (University of Michigan, 2012); MS (Virginia Tech, 2007); BS (Bucknell University, 2005). Research interests include wastewater treatment innovation, nutrient recovery, bioenergy systems design, and sustainable agriculture practices. Key contributions include the EcoRecover phosphorus recovery process, the QSDsan modeling platform, and leadership in CABBI's $262.5M DOE-funded initiative. Guest has secured funding from NSF, US EPA, USDA, and the Bill & Melinda Gates Foundation. Recognitions include the NSF CAREER Award, 2021 James J. Morgan Early Career Award, and the Paul L. Busch Award. He advises over 15 graduate students and leads multiple high-impact projects like the NEWgenerator sanitation system and oilcane biorefinery integration. Lab/Group: Guest Research Group focuses on experimental, computational, and policy-oriented research to solve global sustainability challenges. Current projects address algae-based wastewater treatment, fecal sludge management in low-income regions, and precision fermentation systems development.
Dominique Chen is a Professor at Waseda University's School of Culture, Media and Society since 2022, previously serving as Associate Professor from 2017-2022. A French national born in 1981, he holds a Ph.D. in Interdisciplinary Informatics from the University of Tokyo (2013). His work bridges technology, art, and human experience with a focus on digital well-being and more-than-human relationships. Chen's research interests include human-microbe interaction, neo-cybernetics, and the design of systems that foster mutual care between humans and non-human entities. His work with the Nukabot project exemplifies this interdisciplinary approach, exploring how fermentation processes can serve as metaphors for communication and relationship building. He leads the Ferment Media Research group, investigating how fermentation principles apply to digital cultures and communication systems. His recent publications reveal a consistent focus on designing for well-being in digital societies, with particular attention to translation processes, human-microbe relationships, and the creation of systems that support co-adaptive interaction. The Nukabot research series demonstrates how traditional fermentation practices can inform novel interaction paradigms that acknowledge and incorporate more-than-human perspectives. Best Paper Honorable Mention (2024) - ACM Synlogue with Aizuchi-bot ACM SIGGRAPH Special Prize (2023) - Nukabot Best of AppStore 2015/2016 - Picsee/Syncle applications Good Design Award (2008) - Creative Commons Japan Super Creator certification (2009) - IPA Exploratory IT Program Chen has advised numerous projects through his leadership of Ferment Media Research and has served on various committees including the Good Design Award jury (2016-), Yomiuri Shimbun Reading Committee, and advisory boards for art and design institutions. His work extends beyond academia through his founding of Divideal Inc. (acquired by Smart News in 2018) and Creative Commons Japan (now Commonsphere). His laboratory, Ferment Media Research, explores interdisciplinary connections between fermentation processes, digital systems, and human relationships, creating installations like Nukabot that facilitate human-microbe interaction and Last Words/TypeTrace that examines writing processes and communication.
Jonathan Conway is an Assistant Professor in the Department of Chemical and Biological Engineering at Princeton University and an associated faculty member of the High Meadows Environmental Institute (HMEI). He leads the Conway Lab, which focuses on engineering plant-microbe interactions for applications in bioagriculture, bioenergy, and biochemical industries. Education: B.S. Chemical Engineering, University of Notre Dame (2011) M.S. Chemical Engineering, North Carolina State University (2013) Ph.D. Chemical Engineering, North Carolina State University (2017) Postdoctoral Fellow, University of North Carolina Chapel Hill & Howard Hughes Medical Institute (2017-2021) Research Interests: The Conway Lab develops genetic engineering approaches for non-model bacteria at plant-microbe interfaces. Key research areas include: chemical signaling between plants and microbes, microbiome impacts on plant immunity, environmental stress responses in agricultural systems, and enzymatic degradation of lignocellulosic biomass using thermophilic bacteria. The lab employs bacterial genetics, systems biology, and biomolecular engineering to create technologies for sustainable bioindustries. Publication Trends: Recent work demonstrates strong emphasis on molecular mechanisms of plant-microbe communication (2020-2024), enzyme characterization in biomass degradation (2024-2025), and development of synthetic microbial communities for climate resilience (2024). Earlier research focused on extremophile enzymology and metabolic engineering (2012-2019). Student Advising: Currently mentors 4 graduate students and 8 undergraduates. Alumni include 9 former advisees who graduated between 2022-2024. The lab actively recruits students through Princeton's Chemical Engineering graduate program and undergraduate research initiatives. Laboratory: The Conway Lab develops microfluidic systems for root microbiome studies and genetic tools for engineering plant-associated bacteria. Current projects include designing thermophilic microbial consortia for consolidated bioprocessing and characterizing bacterial immune evasion strategies.
Mark van Loosdrecht is a Full Professor in Environmental Biotechnology at Delft University of Technology (TU Delft), leading the Mark van Loosdrecht Group within the Faculty of Applied Sciences. His research focuses on microbial ecology and innovative wastewater treatment technologies, including biofilm processes, nitrogen/phosphate conversion, and microbial polymer production. He is renowned for developing the Anammox and Nereda technologies, which revolutionize nutrient removal and sludge management in wastewater systems. **Awards & Recognition**: Van Loosdrecht has received prestigious awards such as the Spinoza Award (2014), Stockholm Water Prize (2018), and Lee Kuan Yew Prize (2012). He is a member of the Royal Netherlands Academy of Arts and Sciences and the Dutch and U.S. National Academies of Sciences. **Research Interests**: His work emphasizes sustainable water treatment, resource recovery, and microbial process engineering. Key topics include anaerobic digestion, aerobic granular sludge, and bioremediation strategies for industrial and municipal wastewater. **Publications & Impact**: Over 1,400 peer-reviewed publications and contributions to textbooks like Environmental Biotechnology: Principles and Applications . His research bridges fundamental science with practical applications, addressing global challenges in water management and environmental sustainability. **Affiliations**: He chairs the Environmental Biotechnology section at TU Delft and collaborates globally on projects like the ESDIT initiative, exploring ethics in disruptive technologies.
Dr. Rachel Carmody is the Thomas D. Cabot Associate Professor of Human Evolutionary Biology at Harvard University, affiliated with the Faculty of Arts and Sciences. Her research focuses on energy metabolism, gut microbiome interactions, and their evolutionary implications. She leads the Nutritional & Microbial Ecology Lab, exploring how diet, genetics, and microbial communities influence human energy dynamics. Her work integrates evolutionary biology, physiology, and metagenomics to address questions about human uniqueness in digestion, maternal-offspring energy conflicts, and non-caloric dietary components. Office: Museum of Comparative Zoology 542; Email: carmody@fas.harvard.edu. Key research themes include gut microbiome-modulated obesity, placental hormone roles in pregnancy metabolism, and dietary digestibility frameworks. She also investigates evolutionary shifts in gut microbiota during human industrialization and animal domestication. Her lab employs mouse models, comparative studies, and multiomics approaches to dissect host-microbial interactions. Recent articles highlight microbiome effects on exercise-induced weight changes, antibiotic-induced obesity mechanisms, and cross-cultural dietary comparisons. While no awards are explicitly listed, her prolific publications reflect sustained impact in nutritional and evolutionary microbiology. No student advisees or grants are detailed in the provided text.
Jan Dijkstra is an Associate Professor at Wageningen University specializing in Animal Nutrition . His research focuses on dairy cattle nutrition, methane emissions, and nutrient efficiency. Academic Rank: Associate Professor Department: Animal Nutrition His work emphasizes: Mathematical modelling of methane production Phosphorus and nitrogen balance optimization Feed supplementation strategies for reduced emissions Genotype-environment interactions in dairy systems Recent publications highlight advancements in methane mitigation , nutrient cycling , and rumen microbiome dynamics . He serves as a promotor for multiple PhD projects and contributes to datasets on equine microbiomes and rumen metabolites. Scientific Awards American Feed Industry Association Award (2015) Publicatieprijs ASG (2013) Supervision PhD candidates: Kozorezov, Henry, Koning, Vivares Martinez EngD candidate: Holshof
Simone D. Castellarin is a Professor in the Department of Applied Biology at the University of British Columbia's Faculty of Land and Food Systems, and holds the Canada Research Chair Tier 2 in Viticulture. His research focuses on the molecular and physiological mechanisms governing berry ripening and composition in grapes, blueberries, and raspberries, with emphasis on genomic regulation under environmental stressors like heatwaves and drought. PhD in Plant Biology from the University of Udine (2007) Postdoctoral training at Hochschule Geisenheim University and University of California Davis Research areas include terpene biosynthesis, jasmonate signaling, cuticular wax dynamics, and agronomic strategies for climate change mitigation. Key projects involve remote sensing for vineyard zoning , hormone application effects , and genetic studies of berry quality traits . His work spans collaborations with industry bodies like the BC Wine and Grape Council and academic partners including the Cantu Lab at UC Davis. Recent publications highlight genomic analyses of terpene synthases, water deficit impacts on metabolites, and postharvest quality assessments. Awards include the 2009 Rudolf Hermanns Prize for viticultural research. He supervises numerous PhD and Master's students, and leads the Castellarin Lab at UBC's Wine Research Centre.
Samarpita Roy is an Assistant Professor at TU Delft's Faculty of Applied Sciences, leading the Environmental Biotechnology department's Samarpita Roy Group. Her research focuses on microbial ecology in engineered bioprocesses, integrating metagenomics and quantitative physiology to study microbial metabolisms and community interactions. Key projects include exploring phototrophic and polyphosphate-accumulating organisms in wastewater treatment for nutrient/resource recovery. She actively seeks industrial collaborations and is hiring PhD candidates in metagenomics/microbial ecology. Research emphasizes understanding microbial community dynamics under fluctuating conditions, developing sequencing/data analysis workflows, and applying findings to enhance bioprocess efficiency. Her work aims to advance circular bioeconomy solutions through innovative biotechnology approaches.
