Epigenetic Inheritance Professors and Supervisors | ApplySharif

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Jenny OuyangView profile

Associate Professor

University of Nevada, RenoUnited States

Jenny Ouyang is an Associate Professor in the Department of Biology at the University of Nevada, Reno , where she also serves as Director of the Ecology, Evolution and Conservation Biology graduate program. She earned her B.S. and B.A. from the University of California, Irvine (2007), followed by M.A. and Ph.D. in Ecology and Evolutionary Biology from Princeton University (2009, 2012). Her research focuses on the ecology and evolution of physiological systems , particularly how hormonally regulated traits enable organismal adaptation to environmental changes like urbanization , light pollution , and endocrine stress responses . Education: Ph.D., Ecology and Evolutionary Biology, Princeton University (2012) M.A., Ecology and Evolutionary Biology, Princeton University (2009) B.S., Biology, University of California, Irvine (2007) B.A., French, University of California, Irvine (2007) Her work integrates neuroendocrine mechanisms with ecological contexts to understand phenotypic flexibility and epigenetic adaptation in birds. Recent projects examine how artificial light at night disrupts circadian rhythms, hormonal profiles, and parental behaviors across urban-rural gradients. She has secured major grants including the NSF CAREER award (2022) for studying urbanization and NIH COBRE funding (2017) as part of a neuroscience team. Key collaborations include Dr. Maria Echeverry at Universidad Pontificia Javeriana in Colombia through her 2023 Fulbright award . The Ouyang Lab combines natural and laboratory experiments to investigate stress physiology, with recent papers analyzing glucocorticoid responses to urbanization, gene expression patterns under light pollution, and epigenetic reorganization in response to environmental stressors. Her publications span top journals like Proceedings of the Royal Society B , Biology Letters , and Ecology Applications , where her 2022 paper on lead pollution and reproduction was highlighted by ESA and Swedish Radio. Scientific Awards & Recognition: US Fulbright Scholars Award (2023) NSF CAREER grant (2022) NIH COBRE grant (2017) as team member Advising students like Valentina Alaasam (NSF GRFP awardee) and Ivan Celso Carvalho Provinciato (Dean's Merit Fellowship)

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Steven L'HernaultView profile

Professor

Emory UniversityUnited States

Steven L'Hernault is Professor and Chairman of Biology at Emory University, where he leads research on cellular and developmental processes using Caenorhabditis elegans models. His laboratory investigates molecular mechanisms underlying spermatogenesis, focusing on genetic controls of sperm development and function. The L'Hernault Lab studies highly conserved genome protection mechanisms in germ lines using genetic, molecular, and biochemical approaches. Key research areas include secretory vesicle function, membrane protein interactions, and ubiquitin ligase activity during sperm differentiation. Recent publications examine paternal epigenetic inheritance pathways and palmitoyltransferase functions in spermiogenesis. The lab maintains an extensive collection of C. elegans mutants with defective spermatogenesis to study fundamental cellular processes.

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Michael LampsonView profile

Professor

University of PennsylvaniaUnited States

Michael Lampson is Professor of Biology at the University of Pennsylvania's School of Arts and Sciences, with secondary appointments in the Department of Cell and Developmental Biology. He serves as faculty in the Cell and Molecular Biology (CAMB) and Biochemistry and Molecular Biophysics (BMB) Graduate Groups, and is affiliated with the American Society for Cell Biology (ASCB). Ph.D., Cornell University, Weill Medical College, 2002 AB, Harvard College, 1994 Dr. Lampson's research program focuses on fundamental mechanisms of chromosome biology, with particular emphasis on cell division, centromere inheritance, and meiotic drive. His lab investigates how selfish genetic elements can violate Mendel's First Law through meiotic drive, the stability of centromere chromatin through the germline, and the role of repetitive satellite DNA in chromosome segregation. Using innovative approaches including mouse model systems, optogenetic tools, and biochemical techniques, his work bridges cell biology, genetics, and evolutionary biology to address questions with implications for reproductive biology, cancer, and genetic inheritance. Analysis of Dr. Lampson's recent publications reveals a strong focus on the intersection of centromere biology, meiotic drive, and chromosome segregation mechanisms. His work increasingly incorporates computational approaches alongside experimental systems to study evolutionary aspects of centromere function. The research demonstrates consistent innovation in methodology, particularly in developing optogenetic tools for precise manipulation of cellular processes. Key themes include the role of satellite DNA variation, mechanisms of non-Mendelian inheritance, and the stability of chromatin structures through cell division and development. Searle Scholar Award American Association for the Advancement of Science (AAAS) fellow Dr. Lampson's research is supported by multiple NIH grants including from NIGMS, NHGRI, NICHD, and NCI, as well as University of Pennsylvania funding sources including the University Research Foundation, Abramson Cancer Center, and several specialized research centers. He collaborates extensively with researchers across disciplines, including Ben Black (Biochemistry), Dennis Discher (Chemical Engineering), Dave Chenoweth (Chemistry), and Roger Greenberg (Cancer Biology), reflecting the interdisciplinary nature of his work. His lab has trained numerous graduate students and postdocs who have gone on to successful careers in academia and industry. The Lampson Lab maintains state-of-the-art facilities for cell biological, genetic, and biochemical research, with specialized equipment for live-cell imaging, optogenetic manipulation, and mouse genetics. The lab fosters a collaborative environment that bridges molecular, cellular, and evolutionary perspectives on chromosome biology.

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Peter A. JonesView profile

Professor

Van Andel InstituteUnited States

Peter A. Jones is President and Chief Scientific Officer at the Van Andel Institute (VAI) in Grand Rapids, Michigan, where he leads the Department of Epigenetics. He previously served as Director of the USC Norris Comprehensive Cancer Center from 1993 to 2011 and has been a central figure in advancing epigenetics research, particularly in cancer. His laboratory investigates DNA methylation, chromatin dynamics, and epigenetic therapies. Research Interests: Dr. Jones's work centers on epigenetic mechanisms in cancer, including DNA methylation, histone modifications, nucleosome positioning, and the therapeutic potential of epigenetic drugs. His research has pioneered the use of DNA methylation inhibitors like 5-azacytidine and explored viral mimicry as a mechanism for immune activation in cancer. He also studies transposable elements and their role in gene regulation and immune response. Publication Trends: His recent publications (2021–2024) reveal a strong focus on the interplay between epigenetics and immunotherapy, particularly how DNA methyltransferase inhibitors (DNMTi) induce viral mimicry, enhance immune recognition, and improve responses to checkpoint blockade. Studies span hematological malignancies, solid tumors, and T cell biology, with frequent collaboration with Stephen Baylin and others. Scientific Awards: Member, National Academy of Sciences Member, National Academy of Medicine Fellow, AACR Academy Fellow, AAAS Fellow, American Academy of Arts and Sciences Kirk A. Landon Award for Basic Cancer Research (2009) Medal of Honor, American Cancer Society (2011) Outstanding Investigator Grant, NCI Harvey Prize (2024) Advising and Grants: Dr. Jones mentors multiple postdoctoral fellows, graduate students, and research scientists. His lab is supported by major grants, including the VAI-SU2C Epigenetics Dream Team, which has launched 15 clinical trials. He has received sustained funding from the National Cancer Institute and collaborates with institutions worldwide to advance epigenetic therapies. Labs and Teams: He leads the Peter Jones Laboratory at VAI, a multidisciplinary team investigating epigenetic regulation in cancer. The lab includes computational biologists, clinical researchers, and molecular biologists, working on both basic mechanisms and translational applications. The team is part of larger collaborative initiatives such as the VAI-SU2C Epigenetics Dream Team and the International Linked Clinical Trials Program.

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Nicole C. RiddleView profile

Professor

University of Alabama at BirminghamUnited States

Nicole C. Riddle is a Professor and Associate Chair for Research and Facilities in the Department of Biology at the University of Alabama at Birmingham (UAB). She holds a B.S. in Biology from the University of Missouri Columbia and a Ph.D. in Evolutionary and Population Biology from Washington University in St. Louis. Her research focuses on epigenetics and chromatin dynamics, particularly in the context of aging and sex differences using Drosophila melanogaster as a model system. Dr. Riddle's work explores how epigenetic mechanisms influence lifespan, genome stability, and phenotypic variation. She has pioneered the use of Drosophila to study exercise-induced physiological changes and their genetic underpinnings. Her lab investigates the roles of HP1 proteins in transcriptional regulation and chromatin organization, with recent studies emphasizing cross-species comparisons of aging mechanisms. Her research has been supported by grants including the BII: IISAGE project on sex-specific aging mechanisms. Notable contributions include developing novel tools like the Rotating Exercise Quantification System (REQS) to measure Drosophila activity levels. Dr. Riddle actively mentors students and postdoctoral researchers, inviting inquiries via riddlenc@uab.edu to join her lab.

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John DiffleyView profile

Professor

Francis Crick InstituteUnited Kingdom

John Diffley is a Principal Group Leader and Associate Research Director at The Francis Crick Institute in London, UK, where he leads research on DNA replication mechanisms. His work focuses on understanding how cells precisely duplicate their DNA during cell division and how errors in this process contribute to cancer development. Diffley obtained his PhD from New York University in 1985 and completed postdoctoral training with Bruce Stillman at Cold Spring Harbor Laboratory until 1990. He established his research group at the Clare Hall Laboratories (originally Imperial Cancer Research Fund, then Cancer Research UK) before moving to The Francis Crick Institute in 2015. His research spans DNA replication initiation, cell cycle control, replication fork checkpoints, and epigenetic inheritance. Diffley's lab has pioneered methods to reconstitute chromatin replication using purified proteins, providing unprecedented insights into chromosome biology. His team combines genetics, cell biology, and biochemistry to study the molecular 'machines' that copy DNA in yeast and human cells. Analysis of Diffley's recent publications reveals a strong focus on structural mechanisms of DNA replication, particularly using cryo-EM to visualize replication machinery. His work examines helicase loading and activation, replication fork stability under stress, and the connection between replication errors and cancer development. The research spans model organisms to human cells, with increasing emphasis on structural approaches in recent years. FRS (Fellow of the Royal Society) FMedSci (Fellow of the Academy of Medical Sciences) Diffley actively mentors a diverse team of postdoctoral researchers and PhD students, investigating various aspects of DNA replication. His lab has received substantial funding to support their work on replication mechanisms, with projects spanning basic biochemical reconstitution to studies of replication errors in cancer contexts. The lab maintains multiple technical platforms including structural biology, biochemistry, and cell biology approaches. His research group operates within The Francis Crick Institute's collaborative environment, utilizing shared facilities for structural biology, microscopy, and genomics to advance understanding of DNA replication mechanisms and their implications for genome stability and disease.

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Gary M. ShawView profile

Academic

Stanford UniversityUnited States

Gary M. Shaw is the Rosemarie Hess Professor and Professor (Research) at Stanford University , with courtesy appointments in the Department of Epidemiology and Population Health and Department of Obstetrics & Gynecology - Maternal Fetal Medicine . He serves as Co-PI of the March of Dimes Prematurity Research Center at Stanford and PI of the California Center for Finding Causes and Preventives of Birth Defects . His research focuses on the Epidemiology of birth defects Gene-environment interactions in perinatal outcomes Nutritional factors in reproductive health . He has developed machine learning approaches for precision parenteral nutrition and predictive models for preterm birth, while investigating persistent metabolomic signatures following hypertensive pregnancy disorders. Shaw's recent work explores Climate change impacts on reproductive health Maternal-fetal immune interactions Epigenetic mechanisms in perinatal disease with applications of multiomics to neonatal intensive care units. As a member of Bio-X and the Maternal & Child Health Research Institute , he contributes to translational research networks while serving as Associate Editor for Birth Defects Research and American Journal of Medical Genetics . He supervises Med Scholar Project student Richard Liang Doctoral co-advisor for Saskia Comess and Richard Liang Master's advisor for Lenae Joe while leading the Division of Neonatology as Associate Chair for Clinical Research (2012-2025). His laboratory work integrates Metabolomic profiling Proteomic analysis Computational modeling Machine learning for biomedical data to advance neonatal care through precision medicine approaches.

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Ueli GrossniklausView profile

Professor

University of ZurichSwitzerland

Ueli Grossniklaus is an Ordinary Professor at the University of Zurich within the Faculty of Mathematical and Natural Sciences , affiliated with the Department of Plant and Microbiology . His work focuses on plant developmental biology, particularly epigenetic and genetic mechanisms governing reproduction and adaptation. Key Courses: Epigenetics, Plant Biology Workshop, Group Seminars on Current Research Laboratory Techniques: Advanced methods in plant cell mechanics, transcriptomics, and genome editing Research Interests span plant epigenetics, reproductive biology, and the interplay between environmental stress and genetic regulation. He investigates: Mechanistic control of gametogenesis and fertilization Epigenetic contributions to plant adaptation Evolutionary implications of asexual reproduction Biophysical forces in plant cell growth Publication Trends (2025–2018) reveal expertise in: Arabidopsis and fern model systems Epigenetic regulation (DNA methylation, histone dynamics) Apomixis and hybrid seed failure mechanisms Biomechanics of pollen tubes and carnivorous plants Genome editing tools (CRISPR) and long-read sequencing Scientific Collaborations include interdisciplinary projects on: Microfluidic devices for plant cell analysis Gene drive ecology and ethics 3D imaging of plant reproductive structures Advising and Grants focus on mentoring through research internships in developmental biology, genetics, and systems biology. His lab engages in: Epigenetic response to environmental stress Cell wall mechanics in reproduction Computational modeling of plant growth Laboratory Teams integrate plant biologists, bioengineers, and computational scientists to study: Mechanistic gene regulation Evolutionary developmental biology Microrobotics for cellular force measurement

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Mohsen Yoosefzadeh NajafabadiView profile

Assistant Professor

University of GuelphCanada

Dr. Mohsen Yoosefzadeh Najafabadi is an Assistant Professor in the Department of Plant Agriculture at the University of Guelph, Ontario Agricultural College. He holds a PhD in Plant Breeding from the University of Guelph (2022), following M.Sc. and B.Sc. degrees from the University of Tehran. His research focuses on dry bean breeding, computational biology, and integrating omics technologies to enhance crop resilience and productivity. Key areas include developing stress-tolerant dry bean varieties, leveraging remote sensing for trait prediction, and optimizing genomic selection methods. He leads the Dry Bean Breeding & Computational Biology Program and has contributed to over 30 peer-reviewed publications since 2017. Education : PhD, Plant Breeding, University of Guelph (2022) M.Sc., University of Tehran B.Sc., University of Tehran Research interests emphasize computational tools development (e.g., AllInOne preprocessing framework), omics-based selection strategies, and non-Mendelian heredity mechanisms. His lab combines machine learning with field phenotyping to address agricultural challenges such as disease resistance and climate adaptation. Collaborative projects include soybean cold stress analysis and cannabinoid profile prediction in cannabis. Publications span genomic approaches to crop improvement, remote sensing applications, and transcriptomic studies. He teaches courses in plant breeding methodologies and actively engages in technology transfer initiatives. Lab activities include developing high-yielding dry bean cultivars resistant to biotic/abiotic stresses and advancing data-driven pipelines for crop breeding. Future work aims to synergize AI with multi-omics data to enhance crop resilience in diverse environments.

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Tim LewensView profile

Professor

University of CambridgeUnited Kingdom

Tim Lewens is Professor of Philosophy of Science and Head of the Department of History and Philosophy of Science at the University of Cambridge, currently on leave for the 2024/25 academic year. His career bridges philosophy, biology, and bioethics with significant institutional roles including Deputy Director of CRASSH (2014-2017) and Council Member of the Nuffield Council on Bioethics (2009-2015). His research focuses on philosophy of biology, evolutionary theory, and bioethics, with particular expertise in human nature debates, extended evolutionary synthesis, and medical ethics. Key contributions include critical analyses of mitochondrial replacement therapy ethics, genome editing implications, and conceptual challenges in cultural evolution. His work consistently addresses interdisciplinary tensions between biological determinism and social constructivism. Analysis of his 15 most recent publications reveals dominant themes in evolutionary philosophy (40%), bioethics (35%), and conceptual foundations of science (25%). Notable trends include re-examining Paleyan design arguments in modern biology, ethical frameworks for emerging biotechnologies, and interdisciplinary approaches to human nature that challenge essentialist perspectives. Lewens has secured major research funding including an ERC grant for 'A Science of Human Nature?' (2011-2016) and Templeton Foundation funding for 'Putting the Extended Evolutionary Synthesis to the Test' (2016-2019). His policy impact is evident through contributions to Nuffield Council reports on mitochondrial DNA disorders (2012) and human body donation (2011), demonstrating applied philosophical engagement with contemporary medical ethics.

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Nicholas SheaView profile

Professor

School of Advanced Study, University of LondonUnited Kingdom

Professor Nicholas Shea is a philosopher affiliated with the Institute of Philosophy at the University of London. He specializes in interdisciplinary research at the intersection of philosophy of mind, psychology, cognitive neuroscience, and artificial intelligence. His work spans topics like representational content, metacognition, consciousness, and agency across biological and computational systems. Education : BA in Mathematics, MA and PhD in Philosophy (Birkbeck and King’s College London), postdoctoral research at Oxford University. His research integrates empirical findings from cognitive science with philosophical analysis. Recent projects include the ERC-funded Metacognition of Concepts (2016–2021) and collaborations with Oxford University and City University, London. Key publications examine dual-process cognition, conceptual content, and non-genetic inheritance. His work has been cited over 1,073 times, reflecting his influence in philosophy of science and mind. Scientific Awards : European Research Council Consolidator Grant (2016) AHRC Fellowship ('Meaning for the Brain, Meaning for the Person') He has supervised 6 research students and led projects like Mental Health and Justice (Wellcome Trust 2017–2022) and TeleoLogic (2016–2018). Collaborations include work with Chris Frith and institutions across neuroscience and philosophy.

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Miler T. LeeView profile

Associate Professor

University of PittsburghUnited States

Miler T. Lee is an Associate Professor at the University of Pittsburgh , focusing on gene regulation during early embryonic development through high-throughput experimental and computational genomics. He earned his Ph.D. in Genomics and Computational Biology in 2009 from the University of Pennsylvania under Dr. Junhyong Kim, followed by postdoctoral work with Dr. Antonio Giraldez at Yale University. Joining the university in 2016, his research spans maternal-to-zygotic transition (MZT), RNA stability, pluripotency networks, and evolutionary developmental biology, utilizing model organisms like zebrafish, Xenopus, and Hydractinia symbiolongicarpus. Key Research Themes: Maternally inherited RNA dynamics during embryogenesis Mechanisms of RNA degradation and transcriptome remodeling Evolution of pluripotency networks in hybrid species Role of zinc signaling in fertilization barriers Computational tools for RNA regulation and sensing Scientific Awards: Pan-American Society for Evolutionary Developmental Biology Junior Faculty Award (2024) Outstanding New Investigator – International Xenopus Board (2023) Basil O'Connor Scholar – March of Dimes (2017-2019) Recent publications highlight his work on enhancer classification, RNA degradation mechanisms, and cross-species MZT comparisons. His lab develops innovative methods like RESA for regulatory sequence analysis and studies evolutionary divergence in RNA localization patterns. While the articles span computational and experimental approaches, they consistently address RNA's role in cellular identity, developmental timing, and evolutionary adaptation. Applications include understanding pluripotency, designing RNA biosensors, and elucidating fertilization barriers. Prospective Ph.D. students are encouraged to contact him for opportunities in gene regulation, development, evo-devo, and computational genomics.

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Irina A. AnselmView profile

Assistant Professor

Boston Children's HospitalUnited States

Irina A. Anselm, MD is Assistant Professor of Neurology at Harvard Medical School and Director of the Mitochondrial Program at Boston Children's Hospital. She co-directs the Neurometabolic Program and serves as clinical expert for the hospital's Precision Medicine Service. Her work spans pediatric neurology , neurogenetics , and mitochondrial medicine . Medical School: St. Petersburg Pediatric Medical Academy (1984) Residency: University of Massachusetts Medical Center (1995) Fellowship: New England Medical Center (1998) Dr. Anselm specializes in mitochondrial disorders and neurometabolic syndromes affecting children. Her research focuses on genetic diagnosis , experimental therapies , and clinical management of these complex conditions. She leads clinical trials evaluating novel treatments like dichloroacetate (DCA) for lactic acidemia and collaborates with biotech companies on gene therapy approaches. Key publication areas include mitochondrial disease pathophysiology , neurodevelopmental genetic mutations , and experimental treatment outcomes . She has authored consensus guidelines for mitochondrial disease management and serves as reviewer for multiple journals including Journal of Pediatric Neurology and Current Pediatric Reviews .

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William BalchView profile

Professor

Irell and Manella Graduate School of Biological SciencesUnited States

William Balch, PhD, is a Professor in the Department of Molecular and Cellular Biology at Scripps Research. His research focuses on linking genetic variation in human populations to protein function using machine learning tools like Gaussian Process (GP) modeling. He pioneered concepts in proteostasis and spatial covariance, exploring how genetic and environmental factors influence protein folding and disease. Education: Ph.D. in Microbiology from University of Illinois (1979) Research interests include inherited diseases (e.g., CFTR, AATD, NPC1), aging-related proteostasis collapse, and host-pathogen interactions in SARS-CoV-2. His lab develops computational platforms to model protein design and discover therapeutic interventions. Key projects involve GP-based analysis of genetic diversity, small molecule therapeutics targeting chaperone systems, and understanding viral evolution via spatial covariance. His work bridges genomics and phenomics to address disease mechanisms at atomic resolution. Grants and collaborations focus on protein-folding correction, with applications in precision medicine and climate change mitigation through RuBisCo optimization in plants.

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Lin SuView profile

Lecturer

Queen Mary University of LondonUnited Kingdom

Dr. Lin Su is a Lecturer in Engineering Biology at Queen Mary University of London, leading the Biohybrids group. His research focuses on biohybrid systems in synthetic biology, particularly electron transfer mechanisms between microorganisms and materials, with applications in bioelectrical systems and artificial photosynthesis. Dr. Su holds a PhD in Biomedical Engineering from Southeast University (2021), with postdoctoral research at the University of Cambridge (2021–present). His work includes collaborations with Lawrence Berkeley National Lab and Rice University (2016–2021). He is a Leverhulme Early Career Fellow (2022–2025) and an Isaac Newton Trust Grant recipient. He also serves as a Fellow at Lucy Cavendish College, Cambridge. Research interests span synthetic biology, microbial-material interfaces, and energy-related bioengineering. His lab develops novel platforms integrating living and non-living components for sustainable technologies. Awards: Leverhulme Early Career Fellowship Isaac Newton Trust Grant Fellow of Lucy Cavendish College Grants: Collaborative funding via Leverhulme Trust and Isaac Newton Trust. Labs/Teams: Director of the Biohybrids Group (https://biohybrids.group/), focusing on interdisciplinary engineering-biology research.

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