Find Academic Supervisors

Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

• Bioinformatics
• Machine Learning
• Deep Learning
• +5 more

Aisha Ameen is a Researcher in the Department of Veterinary and Animal Sciences (Pathobiological Sciences) at the University of Copenhagen's Faculty of Health and Medical Sciences, holding dual appointments as Research Assistant and Guest Researcher. Her research centers on Alzheimer's disease mechanisms with emphasis on astrocyte metabolism, glucose/glutamate dynamics, and short/medium-chain fatty acid roles. She employs functional metabolic mapping, dMRI, immunohistochemistry, and hiPSC models to investigate neurodegenerative processes at cellular and systemic levels. Analysis of her 2022-2025 publications reveals consistent focus on metabolic dysregulation in Alzheimer's pathology, particularly astrocyte energy substrate competition and fatty acid interventions. Her work bridges neuroscience, metabolism, and translational disease modeling with significant citation impact and media attention.

• Neuroscience
• Alzheimer's Disease
• Metabolism
• +2 more

Peter Brodersen is a Professor at the Department of Biology, University of Copenhagen , specializing in Bioinformatics and RNA Biology . His research focuses on RNA modification (m6A), YTHDF proteins, and small RNA pathways in plants. Recent research trends from his group include: (1) molecular mechanisms of ARGONAUTE-small RNA interactions, (2) m6A-YTHDF regulatory systems in plant development, and (3) RNAi-independent roles of DICER-LIKE proteins in antiviral defense. Collaborations span Denmark and international institutions. Publications highlight cross-disciplinary work bridging computational biology and experimental plant genetics. Key subfields include RNA structure, epigenetic regulation, and antiviral immunity.

• RNA Biology
• Bioinformatics
• Plant Molecular Biology
• +4 more

Seth Lloyd is a Professor of Mechanical Engineering at the Massachusetts Institute of Technology (MIT), where he directs the Center for Extreme Quantum Information Theory (xQIT). His work bridges theoretical physics, quantum information science, and complex systems theory. He has made significant contributions to the foundations of quantum computing and quantum information processing. Lloyd received his education from prestigious institutions: B.A. from Harvard College (1982) M.Phil from Cambridge University (1984) as a Marshall Scholar Ph.D. in Physics from Rockefeller University (1988) Lloyd's research focuses on quantum information science, particularly quantum computation and quantum communications. He has pioneered work in quantum analog computation, quantum error correction, and quantum metrology. His research explores how quantum mechanics can be harnessed for information processing tasks, with applications ranging from quantum computing to understanding biological processes like photosynthesis. Lloyd is also known for his work on complex systems and the relationship between information and physical systems, arguing that the universe itself can be viewed as a quantum computer. His publication record shows a clear progression from foundational quantum computing work to applications in quantum machine learning and quantum biology. The most recent articles reveal a strong focus on quantum algorithms for machine learning, quantum metrology, and the intersection of quantum mechanics with biological systems. His work on the HHL algorithm for solving linear systems has been particularly influential in quantum machine learning, though its practical advantages have been debated following Ewin Tang's classical algorithms. Lloyd has received numerous scientific honors: Lindbergh Fellow (1994) Finmeccanica Professorship (1996) Edgerton Prize (2001) Fellow of the American Physical Society (2007) Quantum Communication Award (2012) International Quantum Communication Award (2012) Throughout his career, Lloyd has mentored numerous students and researchers in quantum information science. He has secured significant research funding for his work in quantum computing and complex systems. His research has been supported by various foundations and government agencies interested in advancing quantum technologies. Lloyd has also been involved in interdisciplinary collaborations, particularly with biologists studying quantum effects in photosynthesis. Lloyd directs the Center for Extreme Quantum Information Theory (xQIT) at MIT, which brings together researchers from physics, computer science, and engineering to tackle fundamental challenges in quantum information processing. His lab has been at the forefront of developing theoretical frameworks for quantum computing and exploring practical implementations of quantum information protocols.

• Quantum Information Science
• Quantum Computation
• Quantum Communications
• +5 more

Marie Sandberg is an Associate Professor in the Promotion Programme at the Saxo Institute, University of Copenhagen. She is affiliated with the Faculty of Humanities and participates in HUM:Global initiatives focused on interdisciplinary global studies. Her research emphasizes ethnological analyses of migration, borders, and refugee policies, particularly exploring temporal governance, state-civil society interactions, and the paradoxes of welfare-state frameworks. Her work examines the everyday practices of refugees and volunteers in contexts of temporary protection status, as well as the ethical challenges in digital migration studies. She contributes to debates on deterrence policies, repatriation agendas, and the precarity of academic labor. Sandberg’s research methodologies often combine ethnography with critical analysis of policy frameworks. Key Research Themes: Refugee temporariness, border studies, humanitarianism, and academic precarity Professional Roles: Member of the Professional Project Group (PPG) in HUM:Global, coordinating interdisciplinary projects Geographic Focus: Europe, with emphasis on Denmark, Poland, and Germany Recent publications highlight her focus on the interplay between state policies and grassroots efforts, as well as the temporal dimensions of displacement. She has co-edited special issues on migration and authored studies on volunteerism in refugee relief work.

• Ethnology
• Migration Studies
• Refugee Studies
• +3 more

Jan Madsen is a Professor at DTU Compute, Technical University of Denmark, and Head of the Embedded Systems Engineering section. His research focuses on system-level modeling and design of embedded computing systems, particularly cyber-physical systems, microfluidic biochips, and synthetic biology applications. Develops design automation tools and methodologies for embedded systems Supervises numerous PhD students and leads major research projects Research Interests Key areas include: Embedded systems-on-a-chip Cyber-Physical Systems (Internet-of-Things) Microfluidic Lab-on-Chip devices Synthetic biology with molecular computing Design, modeling, and optimization of complex systems Scientific Awards DATE Fellow (2019) IEEE CEDA Outstanding Recognition (2019) DTU Scientific Advise Award (2013) Best Paper Awards at MECO (2013) and CASES (2009) Jorck’s Foundation Research Award (1995) Publications His 14+ journal papers and 115+ conference papers demonstrate expertise in: SystemC-based modeling frameworks Energy-aware sensor networks Self-healing eDNA architectures Microfluidic biochip synthesis RTOS modeling and MPSoC exploration

• Embedded Systems
• Cyber-Physical Systems
• Microfluidic Biochips
• +5 more

Thomas Pape is a Professor at The Natural History Museum of the University of Copenhagen, specializing in the systematics, taxonomy, phylogeny, biogeography and evolution of Diptera (two-winged insects), with special emphasis on Calyptratae families including Sarcophagidae, Oestridae, and Calliphoridae. He has been a professor since 2025 after serving as an Associate Professor from 2004-2024. PhD from Copenhagen University (1990) Docent at Stockholm University (1998) Associate Professor at Danish Bilharziasis Laboratory (1990-1992) Research Entomologist at Naturhistoriska Riksmuseet, Stockholm (1994-2004) His research spans taxonomy, systematics, phylogeny, biogeography and evolution of Diptera with special emphasis on calyptrate families. He collaborates on Systema Dipterorum, conducts comparative larval morphology studies, and investigates the phylogeny of Calyptrata. His work includes Diptera nomenclature and large-scale biodiversity inventories. Analysis of his recent publications reveals a strong trend toward molecular phylogenetics (using RAD-seq and anchored phylogenomics), forensic entomology applications, and biodiversity informatics. His research spans entomology, systematics, evolutionary biology, and increasingly intersects with bioinformatics and conservation science, with significant contributions to understanding flesh flies, bot flies, and blow flies. President of the International Council of Zoological Nomenclature (since 2016) Chair of the Council for the International Congresses of Dipterology (2010-2018) Member of editorial boards for Entomotropica, Studia dipterologica, Stuttgarter Beiträge zur Naturkunde, and Tijdschrift voor Entomologie Dr. Pape teaches courses in Entomology (structure, phylogeny and biology of terrestrial arthropods), Field Biology II - Zoology, and Ecology and Evolution of East Africa (a 2-week field course in Tanzania with Nikolaj Scharff). He has served on scientific panels for SYNTHESYS and as chair of the scientific advisory committee for Museum Koenig in Bonn (2006-2009). His research group employs both morphological and molecular approaches to address evolutionary questions in Diptera, with particular expertise in calyptrate families. The laboratory maintains active international collaborations across multiple continents, as evidenced by his extensive publication record and research network.

• Systematics
• Taxonomy
• Phylogeny
• +7 more

Anders Aagaard Rehfeld is a Postdoc at the University of Copenhagen's Department of Drug Design and Pharmacology, located at Jagtvej 160 in Copenhagen. His research focuses on reproductive biology and pharmacology, with particular emphasis on sperm function and calcium signaling pathways. His research interests center around the CatSper calcium channel in human sperm and how various compounds affect sperm function. He investigates the impact of pharmaceuticals, environmental chemicals, and natural compounds on male reproductive health. His work combines experimental pharmacology with reproductive biology to understand endocrine disruption mechanisms. Dr. Rehfeld's recent publications demonstrate a strong focus on how substances like paracetamol metabolites, pesticides, antidepressants, finasteride, and bisphenol analogs interact with sperm calcium signaling pathways. His research shows consistent patterns in examining chemical interference with the CatSper channel, which is crucial for sperm function and fertility. Scientific Recognition: PhD Cup 2018 Winner His collaborative work extends across multiple institutions in Copenhagen, particularly with Rigshospitalet researchers including Niels Skakkebæk, Anders Juul, and Katharina Main. His media presence includes an interview in Samvirke and a BRIDGE video interview in 2020, indicating engagement with both academic and public audiences. Dr. Rehfeld maintains an active research program with significant contributions to understanding environmental and pharmaceutical impacts on male reproductive health, particularly through the lens of calcium channel physiology in sperm cells.

• Reproductive Biology
• Pharmacology
• Calcium Signaling
• +3 more

Charlotte Jacobsen is a Professor and Head of the Research Group for Bioactives – Analysis and Application at the National Food Institute, Technical University of Denmark (DTU). Her research focuses on lipid oxidation, antioxidants, and sustainable utilization of marine resources. She leads multiple interdisciplinary projects and supervises PhD students in food science and technology. Research Interests: Antioxidant chemistry in food systems Oxidative stability of omega-3 fatty acids Valorization of fish and seafood by-products Microalgae as sustainable sources of bioactives Functional foods and nutraceuticals Green extraction technologies Recent Research Trends: Her recent publications (2021–2025) reflect a strong focus on sustainable food systems, including the recovery of bioactive compounds from fish side-streams, stabilization of omega-3 lipids, development of anti-obesity peptides from seaweed, and cultivation of microalgae using industrial waste streams. The work spans food chemistry, marine biotechnology, and green processing, with applications in functional foods and nutrition. Scientific Awards: Danisco Award, 2003 Edwin Frankel Best Paper Award, 2010 and 2011 La Médaille Chevreul, 2010 Marcuse Lecturer grant, 1999 Advising and Grants: Professor Jacobsen actively supervises PhD students and leads multiple funded research projects, including 'Utilization of fish side-streams for production of novel food ingredients' and 'Sustainable Production of Microalgae Proteins'. She is involved in national and international collaborations, securing research funding for projects on omega-3 extraction, microalgae cultivation, and seafood quality. Labs and Teams: She leads the Research Group for Bioactives – Analysis and Application at DTU, which is part of the DTU Microbes Initiative. The group specializes in analytical methods for bioactive compounds, lipid oxidation analysis, and development of sustainable food ingredients.

• Antioxidant Chemistry
• Lipid Oxidation
• Omega-3 Fatty Acids
• +7 more

Christian Kaarup Baron is an External Lecturer in the Department of Pharmacy at the University of Copenhagen, with research spanning interdisciplinary domains at the intersection of scientific humanities and environmental studies. His core research areas include: History and Philosophy of Science : Critical analysis of epistemic values in paleontological debates, exemplified by work on the Burgess Shale fossil site's scientific interpretations Climate Science : Empirical investigations into climate impacts through the African Monsoon Multidisciplinary Analyses (AMMA) project, focusing on West African environmental systems Baron's 2009 publications reveal a distinctive scholarly trajectory bridging conceptual frameworks from biological sciences with climate modeling methodologies, demonstrating consistent engagement with methodological rigor across disparate scientific fields despite limited output volume.

• History and Philosophy of Science
• Climate Science
• Biomedical Sciences

Professor John W. Edmunds is a leading academic in Infectious Disease Modelling at the London School of Hygiene and Tropical Medicine (LSHTM). Holding a Professor position since 2013 and serving as Dean of the Faculty of Epidemiology and Population Health (2013-2019), he combines mathematical, statistical, and economic models to inform public health policy. His part-time role at the Health Protection Agency (HPA) since 2008 underscores his policy advisory contributions. PhD in Infectious Disease Modelling (Imperial College, 1994) MSc in Health Economics (University of York, 1995) BSc in Biology (Imperial College, 1989) His research focuses on understanding disease transmission and optimizing control strategies. He has pioneered methods integrating social contact surveys , participatory surveillance (e.g., Influenzanet), and economic analysis to evaluate vaccines and interventions. Recent work includes SARS-CoV-2 dynamics , Ebola spatial forecasting , and typhoid vaccine prioritization . His 15 most recent publications highlight social contact patterns (Reconnect, CoMix studies), vaccine impact (HPV, typhoid), and real-time outbreak analytics (Ebola, cholera). Key trends include digital epidemiology , behavioral surveillance , and cross-country modeling for global health. Knighthood (2024) for services to epidemiology Weldon Memorial Prize (2022) for biostatistics contributions FMedSci (2018) for medical science excellence OBE (2016) for public service As an educator, he teaches "Modelling and the Dynamics of Infectious Diseases" and co-organizes "Pandemics: Emergence, Spread and Response" . Current grants include National Institute for Health and Care Research projects on post-pandemic surveillance and Bill & Melinda Gates Foundation funding for polio eradication. He leads collaborations with the Centre for Mathematical Modelling of Infectious Diseases , Vaccine Centre , and Health in Humanitarian Crises Centre , while advising UK and WHO committees on zoonotic influenza , variants , and testing programs .

• Infectious Disease Modelling
• Epidemiology
• Public Health Policy
• +6 more

Annette Juul Vangsted serves as a Clinical Associate Professor in the Department of Clinical Medicine at the University of Copenhagen's Faculty of Health and Medical Sciences. Her clinical specialization is in Internal Medicine with a focus on Hematology, specifically multiple myeloma. Based at Blegdamsvej 9 in Copenhagen, she maintains an active research profile with 67 documented research outputs and extensive collaborations across Nordic countries and internationally. Dr. Vangsted's research primarily centers on multiple myeloma, with particular emphasis on genetic predisposition, treatment outcomes, epidemiological patterns, and bone disease management. Her work bridges clinical practice with genetic research, examining how genetic variants influence disease risk and progression. She investigates geographical variations in myeloma incidence and outcomes, as well as novel treatment approaches for elderly patients and those with specific genetic profiles. Analysis of her recent publications reveals a clear focus on multiple myeloma across several dimensions: genetic susceptibility (including large genome-wide association studies), treatment efficacy (particularly regarding bone disease management), epidemiological patterns across Nordic countries, and specialized care for elderly populations. Her collaborative approach is evident through numerous multi-center studies involving Nordic Myeloma Study Group and international research teams. Dr. Vangsted actively participates in clinical research through the Nordic Myeloma Study Group, contributing to registry studies and clinical trials that inform treatment guidelines for multiple myeloma. Her work has significant implications for understanding disease mechanisms and improving patient outcomes, particularly in the areas of genetic risk assessment and personalized treatment approaches. She maintains strong research collaborations across Denmark, Sweden, and international institutions, with particular focus on hematological malignancies. Her laboratory and clinical research team works within the Department of Clinical Medicine's hematology division, focusing on translational research that directly impacts clinical practice for myeloma patients.

• Hematology
• Multiple Myeloma
• Cancer Genetics
• +4 more

Torben Barington is a Clinical Professor at the Department of Clinical Research, Faculty of Health Sciences, University of Southern Denmark, and a Consultant at the Department of Clinical Immunology, Odense University Hospital. He has held this position since August 2001 and continues to be actively involved in research, teaching, and clinical leadership. MD, University of Copenhagen, 1987 Doctoral Thesis (dr.med.), University of Copenhagen, 1996 Specialist in Clinical Immunology, 1998 His research focuses on cellular immunotherapy of cancer , particularly using CAR T-cell and CAR NK-cell technologies, primary immunodeficiencies , and the B-lymphocyte repertoire and immunoglobulin genes . His work bridges fundamental immunology with clinical applications in oncology and immunodeficiency disorders. His recent publications (2024–2025) highlight advancements in CAR T/NK-cell characterization, cytotoxicity assays, clinical translation, and tumor microenvironment interactions. These works reflect a strong trend toward translational immunology , with emphasis on personalized cancer therapy , single-cell technologies , and clinical trial development . Scientific Awards: Aage og Edith Dyssegaards Fonds æreslegat (1993) Silver Medal, University of Copenhagen (1981) He has supervised over 30 thesis students and currently mentors several graduate students in CAR-based cancer immunotherapies. He serves as an examiner for PhD defenses at both the University of Southern Denmark and the University of Copenhagen. He is also actively involved in national scientific leadership, including as Chairman of the Scientific Committee of the Danish Blood Donor Organization since 2011 and as a member of the Advisory Board for Clinical Immunology in the Region of Southern Denmark since 2007. His research is conducted in collaboration with multidisciplinary teams focusing on cellular immunotherapy , clinical immunology , and translational hematology , often in partnership with Odense University Hospital and national blood and immunology networks.

• Clinical Immunology
• Cellular Immunotherapy
• CAR T-cell Technology
• +6 more

Vilhelm Bohr is an Affiliate Professor at the Department of Cellular and Molecular Medicine , University of Copenhagen, affiliated with the Molecular Aging Program and Center for Healthy Aging . His research explores the interplay between DNA maintenance , mitochondrial biology , and aging , particularly in age-associated neurodegeneration and Alzheimer’s disease. Research Interests include: Molecular mechanisms linking NAD + metabolism to mitochondrial dysfunction and neurodegeneration Role of tau pathology in DNA damage and mitochondrial stress Impact of Aprataxin (APTX) and RECQL4 helicase defects on mitochondrial DNA integrity Pharmacological strategies to improve mitochondrial health via autophagy modulation Publications (2025-2024) span topics like NAD + biosynthesis, Werner/Rothmund-Thomson syndromes, tau nuclear functions, and mitochondrial turnover, with high citations and media attention. Collaborations extend to clinical tumor samples and CRISPR-based disease models.

• DNA Repair
• Mitochondrial Biology
• Aging
• +5 more

Michael Kjær is a Clinical Professor at the Department of Clinical Medicine, University of Copenhagen, Faculty of Health and Medical Sciences. He specializes in Internal Medicine: Rheumatology and leads research groups focused on exercise physiology, sports injuries, and aging. His work addresses the impact of physical activity on the human organism, with particular emphasis on tissue damage and repair mechanisms. Dr. Kjær's primary research interests center around sports medicine, physiology, and exercise science. His work investigates tendon pathology, muscle physiology, sports injuries, and the effects of exercise on aging populations. He has made significant contributions to understanding sports-related injuries, particularly tendon overuse conditions, and the physiological responses to physical activity across different age groups. His recent publications (2025) demonstrate a strong focus on tendon research, sports injury treatment dilemmas, effects of anabolic steroid abuse, muscle physiology, and bone health in athletes and older adults. The research spans from basic science investigations of cellular mechanisms to clinical studies addressing practical sports medicine challenges. His work shows particular strength in connecting molecular and tissue-level changes with clinical outcomes in sports medicine. With 415 research outputs including 369 journal articles, 15 book chapters, and 15 reviews, Dr. Kjær maintains an active research program with substantial impact. His work has been referenced in Wikipedia pages, cited by Bluesky users, and picked up by news outlets, demonstrating its relevance to both academic and public discourse. Dr. Kjær leads multiple research groups within the Center for Healthy Aging Damage and Repair at the Department of Clinical Medicine. His laboratory work focuses on tissue response to injury and exercise, particularly examining tendon and muscle physiology using both in vivo and in vitro approaches. His research bridges basic science with clinical applications in sports medicine and rehabilitation.

• Sports Medicine
• Physiology
• Sports Injury
• +4 more