Find Academic Supervisors

Ole Winther is Professor in High dimensional biological data analysis/Machine learning at the Department of Biology, University of Copenhagen and Professor in Data science and complexity at DTU Compute, Technical University of Denmark. He serves as CRO and co-founder of raffle.ai, CTO and co-founder of FindZebra, Head of ELLIS Unit Copenhagen, and co-PI of the Machine Learning for Life Science Center. His research spans Bioinformatics , Machine Learning , and AI for Science , focusing on applying deep learning to biological sequence analysis, latent variable models, and medical NLP. Winther's work develops predictive and generative models for bioinformatics, with significant contributions to protein localization tools (SignalP, DeepLoc, DeepTMHMM), single-cell genomics, and novel deep learning architectures like variational autoencoders and diffusion models. Analysis of Winther's recent publications (2023-2025) reveals a strong trend toward integrating protein language models with traditional bioinformatics approaches and applying diffusion models to scientific problems. His work bridges theoretical machine learning advancements with practical applications in biology and medicine, particularly in protein sequence analysis, medical search engines, and scientific simulation acceleration. Winther currently supervises a diverse research group including Panagiotis Antoniadis, Rachael M. DeVries, Jun Wang, Beatrix M. G. Nielsen, Felix G. Teufel, Irene R. Rodriguez, Anders Christensen, and Christopher Heje Grønbech. His former students have established successful careers at institutions including Google, Apple, and various startups, with notable alumni like Casper Sønderby (Google Brain) and Søren Sønderby (Apple). He leads significant research initiatives including the ELLIS Unit Copenhagen and the Machine Learning for Life Science Center, while maintaining active industry partnerships through his co-founded companies raffle.ai (enterprise search using NLP) and FindZebra (search engine for rare diseases). His teaching includes Deep Learning courses at both DTU (02456) and University of Copenhagen (NDAK24002U).

• Bioinformatics
• Machine Learning
• Deep Learning
• +5 more

Peter Brodersen is a Professor at the Department of Biology, University of Copenhagen , specializing in Bioinformatics and RNA Biology . His research focuses on RNA modification (m6A), YTHDF proteins, and small RNA pathways in plants. Recent research trends from his group include: (1) molecular mechanisms of ARGONAUTE-small RNA interactions, (2) m6A-YTHDF regulatory systems in plant development, and (3) RNAi-independent roles of DICER-LIKE proteins in antiviral defense. Collaborations span Denmark and international institutions. Publications highlight cross-disciplinary work bridging computational biology and experimental plant genetics. Key subfields include RNA structure, epigenetic regulation, and antiviral immunity.

• RNA Biology
• Bioinformatics
• Plant Molecular Biology
• +4 more

Thomas Pape is a Professor at The Natural History Museum of the University of Copenhagen, specializing in the systematics, taxonomy, phylogeny, biogeography and evolution of Diptera (two-winged insects), with special emphasis on Calyptratae families including Sarcophagidae, Oestridae, and Calliphoridae. He has been a professor since 2025 after serving as an Associate Professor from 2004-2024. PhD from Copenhagen University (1990) Docent at Stockholm University (1998) Associate Professor at Danish Bilharziasis Laboratory (1990-1992) Research Entomologist at Naturhistoriska Riksmuseet, Stockholm (1994-2004) His research spans taxonomy, systematics, phylogeny, biogeography and evolution of Diptera with special emphasis on calyptrate families. He collaborates on Systema Dipterorum, conducts comparative larval morphology studies, and investigates the phylogeny of Calyptrata. His work includes Diptera nomenclature and large-scale biodiversity inventories. Analysis of his recent publications reveals a strong trend toward molecular phylogenetics (using RAD-seq and anchored phylogenomics), forensic entomology applications, and biodiversity informatics. His research spans entomology, systematics, evolutionary biology, and increasingly intersects with bioinformatics and conservation science, with significant contributions to understanding flesh flies, bot flies, and blow flies. President of the International Council of Zoological Nomenclature (since 2016) Chair of the Council for the International Congresses of Dipterology (2010-2018) Member of editorial boards for Entomotropica, Studia dipterologica, Stuttgarter Beiträge zur Naturkunde, and Tijdschrift voor Entomologie Dr. Pape teaches courses in Entomology (structure, phylogeny and biology of terrestrial arthropods), Field Biology II - Zoology, and Ecology and Evolution of East Africa (a 2-week field course in Tanzania with Nikolaj Scharff). He has served on scientific panels for SYNTHESYS and as chair of the scientific advisory committee for Museum Koenig in Bonn (2006-2009). His research group employs both morphological and molecular approaches to address evolutionary questions in Diptera, with particular expertise in calyptrate families. The laboratory maintains active international collaborations across multiple continents, as evidenced by his extensive publication record and research network.

• Systematics
• Taxonomy
• Phylogeny
• +7 more

Konstantinos Kalogeropoulos is an Assistant Professor at the Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU), leading research at the Cell Diversity Lab. His work bridges proteomics, computational biology, and snake venom research. Current projects: "The Proteomic Landscape during Influenza Infection" (2022-2025) Supervisor for PhD projects on protease network rewiring in psoriasis and wound exudate degradomics Research interests include: Proteomic analysis of inflammatory diseases Snake venom toxin structure prediction Extracellular matrix biomechanics De novo peptide sequencing algorithms Computational modeling of protease networks Recent article trends demonstrate his work in • Database-free proteomics (InstaNovo/InstaNexus) • Snake venom pathophysiology (V-ToCs clustering) • Inflammatory disease biomarkers (psoriasis, impaired healing) • Extracellular matrix mechanics (fibronectin tension, gut inflammation) Advising: Supervises PhD students Polhaus, C. J. M. and Haack, A. M., focusing on protease networks and wound healing.

• Proteomics
• Snake Venom Research
• Protein Structure Prediction
• +3 more

Anders Krogh is a Professor at the Department of Computer Science, University of Copenhagen, and also holds a position at the Department of Public Health in the Section for Health Data Science and AI. He serves as the head of the Center for Health Data Science (HeaDS) in the Faculty of Health and Medical Sciences. Previously, he was affiliated with the Department of Biology at the University of Copenhagen until 2020. Dr. Krogh earned his PhD in theoretical physics but transitioned into machine learning and bioinformatics during his doctoral studies. His research spans both theoretical foundations and practical applications in these fields. He is particularly renowned for his pioneering work on hidden Markov models for biological sequences, which has had significant impact in computational biology. In recent years, Krogh's research has focused on deep generative models applied to gene expression data and other biomedical applications. His work bridges computer science with healthcare, developing AI-driven approaches for precision medicine, cancer diagnostics, and analysis of complex biological systems. His current research integrates machine learning with quantum computing applications in biomolecular modeling. Analysis of his recent publications reveals a strong trend toward applying artificial intelligence to healthcare challenges, particularly in rare diseases, cancer diagnostics, and personalized medicine. His work increasingly incorporates federated learning approaches to address privacy concerns while enabling collaborative research across institutions. There's also a growing emphasis on quantum computing applications in biomolecular modeling and drug discovery. As head of the Center for Health Data Science, Krogh leads interdisciplinary research efforts that bring together computer scientists, medical researchers, and clinicians. His team develops novel computational frameworks like MOSAIC for multimodal analysis of rare cancers and multiDGD for multi-omics data integration. These tools are designed to translate AI innovations into clinical practice while addressing the unique challenges of medical data.

• Machine Learning
• Bioinformatics
• Deep Generative Models
• +3 more

Jeppe Lund Nielsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. His research lies at the intersection of microbial ecology, genomics, and environmental biotechnology, with a strong focus on sustainable solutions for wastewater treatment, anaerobic digestion, and environmental monitoring. His primary research interests include Microbial Ecology, Functional Ecology, Genomics, Molecular and Technical Microbiology, Anaerobic Digestion, Metagenomics, and eDNA Metabarcoding . He applies molecular tools to understand microbial community dynamics in engineered and natural systems, particularly in wastewater and marine environments. His work contributes to the UN Sustainable Development Goals related to clean water, sustainable cities, and climate action. The recent publication trends reflect a strong emphasis on environmental applications of microbiome science, including nitrogen cycling in wastewater, bioaerosol exposure in workers, eDNA-based biodiversity monitoring, and valorization of waste streams through biotechnology. His articles frequently appear in high-impact environmental and microbiological journals and demonstrate interdisciplinary collaboration across engineering, ecology, and public health. Among his notable scientific contributions are leadership roles in significant research projects such as the AAU Bubble Project (Power2Proteins), JAMBO seabed impact study, and investigations into biotechnological pesticides. He has also contributed to public discourse through media engagement on topics like pesticide regulation and environmental innovation. Professor Nielsen has supervised PhD students, including M. Eskeldsen, and is actively involved in grants and collaborative research across Europe. He is a key member of research teams focused on environmental microbiology, wastewater biotechnology, and marine impact assessments. His lab integrates molecular biology, bioinformatics, and environmental engineering to address pressing sustainability challenges.

• Microbial Ecology
• Functional Ecology
• Genomics
• +10 more

Maria Timofeeva is an Associate Professor in the Epidemiology, Biostatistics and Biodemography (EBB) department at the University of Southern Denmark (SDU), with additional affiliation at the Danish Institute for Advanced Study (DIAS). She holds an Honorary Fellow position at the University of Edinburgh since December 2019. Her research focuses on cancer prevention and prediction, particularly studying the effects of environmental and genetic factors on cancer risk and progression. Dr. Timofeeva earned her Dr.sc.hum in Epidemiology from Heidelberg University (2005-2009), with a dissertation on genetic polymorphisms as risk factors for early onset lung cancer. Prior to her current position, she worked as a Statistical Geneticist at the University of Edinburgh (2013-2019) and as a Postdoctoral Fellow at the International Agency for Research on Cancer (2009-2013). Her research interests center around understanding the genetics of cancer risk through multi-omic analysis. She leads several significant projects, including the Interdisciplinary Project on Adherence to Colorectal Cancer Screening, meta-analysis of factors associated with false-positive and false-negative FOBT results (registered in PROSPERO ID: CRD42022315767), and the COlorectal Cancer screening Among RElatives (CoCARE) twin-family study in Denmark. Her methodological expertise spans observational epidemiological studies (case-control, population-based cohort studies, twin studies), meta-analysis, umbrella reviews, and multi-omics data analysis. Analysis of her recent publications reveals a strong focus on colorectal cancer genetics, with particular emphasis on genome-wide association studies, Mendelian randomization approaches, and trans-ancestry analyses. Her work frequently leverages large datasets including the UK Biobank and international consortia, with applications in cancer risk prediction and understanding gene-environment interactions. Dr. Timofeeva has an extensive publication record with 73 publications listed in her profile. Her research has been cited across multiple platforms, with mentions in news outlets, social media, and academic readership platforms like Mendeley. She is actively involved in academic service, serving as a peer reviewer for journals including BMC Cancer and Scientific Reports, and participating in conferences such as the 26th Nordic Congress of Gerontology. She also serves on evaluation committees, including with the World Cancer Research Fund International (April-May 2024). Her teaching activities include courses on evidence-based drug utilization and biostatistics, as well as supervision of research projects on gene expression in twins. Dr. Timofeeva has engaged with the public through media contributions, including an interview titled 'Jeg vil forstå, hvorfor vi får kræft' (November 15, 2021), where she discussed understanding why we get cancer.

• Cancer Epidemiology
• Genetic Risk Factors
• Colorectal Cancer
• +7 more

Mads Albertsen is a Professor in the Department of Chemistry and Life Sciences at the Faculty of Engineering and Science, Aalborg University, Denmark. He leads the Albertsen Lab and is a key member of the Center for Microbial Communities. His research focuses on high-throughput DNA sequencing methods to explore uncultivated microbes and populate the tree of life. He is actively involved in major interdisciplinary projects such as NanoEat , Microflora Danica , and DarkScience , funded by the European Research Council, Villum Foundation, and Poul Due Jensen Foundation. His research interests span metagenomics , long-read sequencing , bioinformatics , microbial ecology , and environmental biotechnology . He develops cutting-edge methods to improve throughput in microbial genome recovery and applies them to diverse areas including wastewater treatment, human microbiome studies, and infectious disease diagnostics. His work has significant implications for public health and sustainability. The recent publications highlight a strong trend in long-read sequencing (Oxford Nanopore), metagenome-assembled genomes (MAGs) , and microbial dark matter . His team has published high-impact papers in Nature , Nature Methods , and Nature Communications , with applications in environmental systems and clinical diagnostics, including SARS-CoV-2 and bloodstream infections. His scientific awards include: The Grundfos Prize (2021) The Fritz Kaufmann Prize (2021) The Rising Star Award by IWA & ISME (2016) Research Result of the Year in Denmark (2015) The Spar Nord Fond Research Prize (2015) Mads Albertsen advises numerous PhD students, leads externally funded research projects, and is involved in technology transfer through his co-founding of DNASense ApS (2014–2020). He also serves on scientific advisory boards and contributes to public policy, including as a member of the Danish SARS-CoV-2 variant risk-assessment group. He teaches courses in Data Science, Bioinformatics, Genomics, and Environmental Microbiology at Aalborg University. His lab, the Albertsen Lab , is part of the Center for Microbial Communities , a leading research center focused on microbial systems biology and environmental applications. The lab collaborates extensively with national and international partners in academia, industry, and public health institutions.

• Environmental Microbiology
• Metagenomics
• Microbial Ecology
• +14 more

Christian Igel is a Professor at the Department of Computer Science, University of Copenhagen, and serves as director of the SCIENCE AI Centre . He is also a co-lead of the Pioneer Centre for Artificial Intelligence in Denmark. His academic journey includes a Doctoral degree from Bielefeld University (2002) and a Habilitation degree from Ruhr-University Bochum (2010). Igel is a Juniorprofessor (2002–2010) and has held editorial roles at journals like KI - Künstliche Intelligenz and Artificial Intelligence Journal . Doctoral degree: Faculty of Technology, Bielefeld University, Germany (2002) Habilitation degree: Department of Electrical Engineering and Information Sciences, Ruhr-University Bochum, Germany (2010) His research spans Machine Learning , focusing on Support Vector Machines , Evolution Strategies , Reinforcement Learning , Deep Neural Networks , and PAC-Bayesian Analysis . He applies these methods to Environmental Monitoring , Medical Diagnostics , and Climate Research . Recent publications highlight work on adversarial machine learning , environmentally sustainable AI , and tree resource mapping using deep learning. His scientific awards include being a ELLIS Fellow . Igel’s software tools like Shark , woody , and Multi-Planar UNet are widely used in research and industry. Notable grants and collaborations involve projects with European Lab for Learning and Intelligent Systems (ELLIS) , SCIENCE AI Centre , and international teams in Denmark , Germany , and France . His lab leadership emphasizes open-source frameworks and reproducible research. Editorial Roles: German Journal on Artificial Intelligence , Evolutionary Computation Journal , Artificial Intelligence Journal Software Projects: Shark , woody , Multi-Planar UNet , U-Time Collaborations: SCIENCE AI Centre , Pioneer Centre for Artificial Intelligence , European Lab for Learning and Intelligent Systems

• Machine Learning
• Pattern Recognition
• Classification
• +6 more

Erwin Schoof is an Associate Professor at the Department of Biotechnology and Biomedicine , Technical University of Denmark. He leads the Cell Diversity Lab and focuses on advancing proteomics and mass spectrometry technologies. Expertise in single-cell proteomics , stem cell niches , and bioinformatics . Active in myelofibrosis and leukemia research , with applications in UN Sustainable Development Goals . Research Trends from 2025–2024 include: Machine learning-driven peptide sequencing (InstaNovo, InstaNexus). Single-cell resolution tools for mapping hematopoietic stem cells and tumor microenvironments . Biomarker discovery in chronic diseases and respiratory conditions . Supervision : Mentors multiple PhD students on single-cell proteomics , omics data analysis , and biotherapeutic production . Labs & Collaborations : Collaborates with international teams on plasma proteomics , 3D bioengineering , and advanced mass spectrometry workflows .

• Proteomics
• Mass Spectrometry
• Single-Cell Analysis
• +7 more

Philip Bille is a Professor and Head of the Algorithms, Logic and Graphs section at the Department of Applied Mathematics and Computer Science, Technical University of Denmark (DTU), College of Engineering. His research centers on the design and analysis of efficient algorithms, particularly for string processing, compressed data, and data structures. His research interests lie at the intersection of theoretical computer science and practical applications. He focuses on algorithms , data structures , string indexing , pattern matching , and compressed computation . His work enables efficient querying and processing of large-scale, repetitive data, with applications in bioinformatics, intrusion detection, and green computing. The recent publications reflect a strong trend in developing space-efficient and fast algorithms for modern computational challenges. Key themes include compressed data structures , sliding window indexing , finite automata compression , and energy-aware matrix operations . These works demonstrate expertise in balancing theoretical rigor with practical performance. Philip Bille actively supervises multiple PhD students and leads several research projects. He contributes to advancing sustainable computing aligned with UN SDGs. His work integrates algorithmic theory with real-world efficiency. Supervises PhD projects on hierarchical compression, adaptive computation, and vector processor algorithms. Involved in research on green computing, compressed formats, and efficient data models. He is affiliated with the Algorithms, Logic and Graphs group at DTU, a hub for theoretical and applied algorithmic research. The team explores fundamental problems in data representation and processing, pushing the boundaries of what is computationally feasible in terms of time and space.

• Algorithms
• Data Structures
• String Processing
• +9 more

Professor David E. Gloriam is a leading expert in G protein-coupled receptors (GPCRs) at the University of Copenhagen , Department of Drug Design and Pharmacology. Recognized as a top 1% Clarivate Highly Cited Researcher, he leads GPCRdb, a major database with >50,000 annual users, and develops computational tools like GPCRgraphs for drug discovery. His innovation roles include Senior Scientific Expert at Kvantify A/S and applications in pharmaceutical industry tools with patent citations. Education: Ph.D. in Medicine (Uppsala University, 2006), M.Sc. in Pharmaceutical Sciences (Uppsala University, 2003) Leadership: Head of GPCRdb (2014–), EU COST Actions member (2014–17), and institutional leadership roles in Pharmaceutical Data Science unit and Research Leadership Forum Research Interests: His work spans computational modeling of GPCR dynamics, virtual screening methods for inaccessible receptors, pharmacogenomics (PGxDB platform), and biased signaling for safer drugs. He integrates structural biology, data science, and bioinformatics to advance pharmaceutical discovery. Awards: Clarivate Highly Cited Researcher (2022) IUPHAR Analytical Pharmacology Award (2023) Lars Arge Prize for Big Data (2021) UCPH Forward Talent Program (2019) ERC Starting Grant (2014) Teaching & Supervision: Teaches Molecular Pharmacology and AI in Drug Discovery , and supervises 3 current PhD students. He has mentored 13 PhDs and 14 Postdocs, with former members attaining tenured academic or industry roles.

• G Protein-Coupled Receptors (GPCRs)
• Computational Drug Discovery
• Biostructural Research
• +6 more

Hernan Eduardo Morales Villegas is an Associate Professor at the Section for Hologenomics within the Globe Institute of the University of Copenhagen, holding dual affiliations with the Faculty of Science and Faculty of Health and Medical Sciences. His research bridges evolutionary biology and conservation science through genomic approaches to biodiversity crises. Dr. Morales specializes in genomic erosion—the loss of genetic diversity during population collapse—and its implications for extinction risk and species recovery. Leading the Evolutionary and Conservation Genomics Group, he integrates paleogenomics, evolutionary modeling, and quantitative analyses to study endangered species, museum specimens, and simulated evolutionary dynamics. His work spans adaptation mechanisms, speciation processes, and conservation genetics, with emphasis on how anthropogenic pressures alter genomic landscapes across taxa. Recent publications (2019-2025) reveal a cohesive research trajectory applying genomic tools to urgent conservation challenges. Studies on the kākāpō, woolly mammoth, and Iberian wolf demonstrate how genetic load, adaptive introgression, and habitat fragmentation influence species resilience. His work increasingly focuses on predictive modeling of genomic erosion dynamics, with methodologies evolving from single-species analyses toward cross-taxon comparative frameworks that inform conservation prioritization. As director of the Evolutionary and Conservation Genomics Group, Morales fosters international collaborations evidenced by multi-institutional publications in high-impact journals. His research attracts significant scientific attention, with studies covered by hundreds of news outlets and cited extensively in policy discussions, highlighting the translational impact of genomic insights for biodiversity conservation in the Anthropocene.

• Evolutionary Genomics
• Conservation Genomics
• Genomic Erosion
• +5 more

Elvis Genbo Xu is an Associate Professor at the Department of Biology, University of Southern Denmark. His research focuses on environmental toxicology, particularly micro/nanoplastics and crude oil pollutants. He employs transcriptomics and bioinformatics to study marine ecosystems and embryonic model systems. University of Southern Denmark Department of Biology Active since at least 2018 Research Interests: Micro/Nanoplastics Crumb Rubber Marine Protected Areas Endocrine Disruptors Transcriptomics Bioinformatics Article Trends (2018-2019): Focus on nanoplastics and microplastics Environmental impact assessment Toxicity mechanisms in aquatic organisms Methodological innovations in plastic analysis Interdisciplinary approaches combining toxicology, materials science, and molecular biology Scientific Recognition: 2024 World's Top 2% Scientists 2023 Undervisningsprisen på Naturvidenskab 2021 Faculty Research Dissemination Prize 2020 Best ES&T Letters Paper Advising & Editorial Roles: Active PhD/Postdoc supervision Junior Editor at Journal of Hazardous Materials (2020) Editorial Board member for Environment International (2022)

• Environmental Pollution
• Micro/Nanoplastics
• Crude Oil Toxicology
• +8 more

Bo Markussen is a Professor at the University of Copenhagen within the Department of Mathematical Sciences . He is also a member of the Data Science Laboratory , where he contributes to statistical methodology and interdisciplinary collaborations. His academic journey began with a Cand.Scient (MSc) and PhD in Statistics from the University of Copenhagen, awarded in 1998 and 2002 respectively. 2012–present: Professor, Department of Mathematical Sciences, University of Copenhagen 2009–2012: Associate Professor, Department of Basic Sciences and Environment, University of Copenhagen 2006–2009: Assistant Professor, Department of Basic Sciences and Environment, University of Copenhagen Bo Markussen's research focuses on applied statistics , particularly in functional data analysis and multiple testing corrections in genetics . His work spans diverse domains including environmental science, agriculture, and public health. Recent research output highlights applications in Arctic climate data analysis, fire risk modeling, plant stress phenotyping, and nutritional biomarker prediction. His recent publications demonstrate a strong trend toward machine learning integration with statistical modeling , addressing challenges in high-dimensional data analysis and environmental risk assessment. Collaborations span institutions in Denmark and internationally, reflecting his engagement in pan-Arctic climate studies and tropical agricultural research. 2018–present: Associate Editor, Scandinavian Journal of Statistics 2017–2019: Chair, Danish Society for Theoretical Statistics 2015–2017: Board Member, Danish Society for Theoretical Statistics As a central figure in the Data Science Laboratory , Markussen leads statistical consultancy initiatives and contributes to methodological advancements. His expertise bridges theoretical statistics with real-world applications, particularly in handling complex datasets across biological and environmental domains.

• Applied Statistics
• Statistical Consultancies
• Functional Data Analysis
• +5 more