About
Pixu Shi is an Assistant Professor in the Department of Biostatistics and Bioinformatics at Duke University's School of Medicine. Previously, they served as a Visiting Assistant Professor in the Department of Statistics at the University of Wisconsin-Madison (2018-2020) and as a Postdoctoral Researcher in the Department of Biostatistics at the University of Wisconsin-Madison (2016-2018).
Dr. Shi earned their PhD in Biostatistics from the University of Pennsylvania in 2016 under advisor Hongzhe Li. They also hold an MS in Biostatistics from the University of Pennsylvania (2015), an MS in Statistics from Rutgers University (2012), and a BS in Statistics from Peking University (2010).
Dr. Shi's research focuses on developing statistical methods for Microbiome Research, Longitudinal/Temporal Omic Data analysis, Integration of Omic Data, Spatial Omics, and High-dimensional Statistical Inference. Their work bridges statistical theory with practical applications in biomedical research, particularly in microbiome studies where they've made significant contributions with the TEMPTED (TEMPoral TEnsor Decomposition) method.
The article trends show a strong focus on microbiome analysis, statistical methodology development, and applications in obesity, infectious disease, and cancer research. Their most recent work (2024-2025) demonstrates expertise in tensor decomposition methods, longitudinal data analysis, and integrating microbiome data with clinical outcomes across diverse areas including adolescent obesity, viral infections, and cancer metastases.
Dr. Shi has secured multiple substantial research grants from major institutions including the National Institutes of Health (NIMH, NIAID, NCI, NIDDK, NIA), totaling over a decade of continuous funding for projects related to microbiome research, HIV/AIDS, cancer biomarkers, and metabolic studies.
They actively contribute to education through teaching courses such as BIOSTAT 905: Linear Models and Inference at Duke University and previously taught statistics courses at the University of Wisconsin-Madison. Dr. Shi has also organized specialized workshop series including Quantitative Methods for HIV/AIDS, Microbiome, Immunology, and Cancer Bioinformatics.
