Jamie R. Oaks

Jamie R. Oaks is an Associate Professor in the Department of Biological Sciences at Auburn University, where he leads the Phyletica Lab. His research focuses on understanding the processes that generate biodiversity through evolutionary and computational approaches.

• Ph.D. in Ecology and Evolutionary Biology – University of Kansas, 2013
• M.S. in Biological Sciences – Louisiana State University, 2007
• B.Sc. in Biology – University of Wisconsin Oshkosh, 2004

Dr. Oaks' research integrates theoretical, computational, and applied methods in phylogenetics, phylogeography, and population genetics. His lab develops Bayesian models and computational tools to infer evolutionary histories and test diversification models. The empirical focus is primarily on reptiles and amphibians, though the lab also works with systems ranging from viruses to plants.

The recent publications highlight a strong trend in methodological development in Bayesian phylogenetics and biogeographic inference, with applications in conservation, speciation, and cryptic diversity. His work often involves fossil calibration, multilocus data, and model-based testing of historical diversification scenarios.

Scientific Awards and Recognition:

• SSB GSRA award ($2900) – awarded to student Tanner from the Society of Systematic Biologists
• STRI Fellowship – awarded to student Claire for research on temperature tolerance evolution

Dr. Oaks actively mentors graduate students, with several receiving competitive awards. His lab has secured research support through fellowships and grants, enabling field and genomic studies. The Phyletica Lab also contributes to open science through software development shared via GitHub and active science communication via a lab blog.

The Phyletica Lab is a dynamic research group focused on exploring biodiversification. It combines model development, computational implementation, and empirical data analysis to address fundamental questions in evolutionary biology. The team collaborates widely and presents at major conferences such as MIC-Phy.